hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            156740265.fa
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Query sequence: gi|156740265|ref|YP_001430394.1|
Accession:      [none]
Description:    hypothetical protein Rcas_0243 [Roseiflexus castenholzii DSM 13941]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
ChaB            ChaB                                      2.8        4.4   1
DUF913          Domain of Unknown Function (DUF913)       0.7        4.7   1
DUF1375         Protein of unknown function (DUF1375)     2.0        7.6   1
DNA_primase_S   Eukaryotic and archaeal DNA primase s     0.3        9.3   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
DUF913            1/1       2    12 ..   472   482 .]     0.7      4.7
DNA_primase_S     1/1      45    73 ..   197   237 .]     0.3      9.3
DUF1375           1/1      53    61 ..    72    80 .]     2.0      7.6
ChaB              1/1     134   142 ..    52    60 .]     2.8      4.4

Alignments of top-scoring domains:
DUF913: domain 1 of 1, from 2 to 12: score 0.7, E = 4.7
                   *->LatLPsLPfdF<-*
                      L+ +P+LP +F
  gi|1567402     2    LYDVPVLPTMF    12

DNA_primase_S: domain 1 of 1, from 45 to 73: score 0.3, E = 9.3
                CS    TTS-GGG-EEE---EEEEEE------............---
                   *->nvtkginhllraPfsihpktgrvsvplakkknrdleivvdp<-*
                      ++ ++++ ++++P+++ +k gr+  p            ++
  gi|1567402    45    SRPTPKGETFALPYVYMGKDGRRTKP------------LNA    73

DUF1375: domain 1 of 1, from 53 to 61: score 2.0, E = 7.6
                   *->TLLLPydlt<-*
                      T+ LPy+++
  gi|1567402    53    TFALPYVYM    61

ChaB: domain 1 of 1, from 134 to 142: score 2.8, E = 4.4
                   *->NngrWvpra<-*
                      NngrW+ ++
  gi|1567402   134    NNGRWILFT    142

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