hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 157737276.fa
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Query sequence: gi|157737276|ref|YP_001489959.1|
Accession: [none]
Description: hypothetical protein Abu_1030 [Arcobacter butzleri RM4018]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
He_PIG Putative Ig domain 61.5 1.1e-16 4
Cadherin Cadherin domain 49.4 1.9e-13 5
PPC Bacterial pre-peptidase C-terminal do 13.6 0.0033 1
PKD PKD domain 9.9 0.016 5
BiPBP_C Penicillin-Binding Protein C-terminus 10.2 0.024 2
SBBP Beta-propeller repeat 9.8 0.06 1
MORN_2 MORN repeat variant 11.1 0.063 2
Bac_surface_Ag Surface antigen 5.4 0.25 1
Big_1 Bacterial Ig-like domain (group 1) 5.0 0.37 1
Flavi_propep Flavivirus polyprotein propeptide 6.7 0.38 1
DUF1901 Domain of unkown function (DUF1901) 5.1 0.81 1
YlaC Extracytoplasmic function sigma facto 4.5 0.86 1
CUB_2 CUB-like domain 5.3 1 1
Metalloenzyme Metalloenzyme superfamily 3.9 1.3 1
Cna_B Cna protein B-type domain 3.6 1.5 1
CVNH CVNH domain 4.0 1.6 1
EMP24_GP25L emp24/gp25L/p24 family/GOLD 3.5 1.6 1
DUF2334 Uncharacterized protein conserved in 1.4 2 1
Peptidase_C25_C Peptidase family C25, C terminal ig-l 3.2 2 1
DUF159 Uncharacterised ACR, COG2135 0.6 2.1 1
OprB Carbohydrate-selective porin, OprB fa 1.8 2.2 1
Invasin_D3 Invasin, domain 3 3.1 2.2 1
Urease_beta Urease beta subunit 3.8 2.5 1
F5_F8_type_C F5/8 type C domain 2.8 2.7 1
Hid1 High-temperature-induced dauer-format -0.1 2.7 1
DUF2603 Protein of unknown function (DUF2603) 2.0 2.8 1
DUF1951 Domain of unknown function (DUF1951) 1.4 3 1
SEA SEA domain 3.1 3.1 1
DUF1400 Alpha/beta hydrolase of unknown funct 2.3 3.1 1
DUF2234 Uncharacterized protein conserved in 2.2 3.7 1
DUF1522 Domain of Unknown Function (DUF1522) 2.3 3.8 3
Peptidase_M8 Leishmanolysin -0.6 4 1
Drmip_Hesp Developmentally Regulated MAPK Intera 2.2 4.2 1
Porin_2 Porin subfamily 0.8 4.3 1
DUF1148 Protein of unknown function (DUF1148) 1.6 4.7 1
DUF1983 Domain of unknown function (DUF1983) 2.1 4.7 1
DUF2584 Protein of unknown function (DUF2584) 1.8 4.8 1
ChlamPMP_M Chlamydia polymorphic membrane protei 2.5 4.9 1
Phage_cap_P2 Phage major capsid protein, P2 family 1.2 5.2 1
Reovirus_L2 Reovirus core-spike protein lambda-2 -1.5 5.3 1
Spore_YhcN_YlaJ Sporulation lipoprotein YhcN/YlaJ (Sp 1.1 5.4 1
Glyco_hydro_12 Glycosyl hydrolase family 12 1.7 5.7 1
CDC24 CDC24 Calponin 1.7 5.9 1
HgmA homogentisate 1,2-dioxygenase -0.1 5.9 1
DoxA TQO small subunit DoxA 1.0 6.2 1
FlaE Flagellar basal body protein FlaE 1.5 6.3 1
Adeno_E4 Mastadenovirus early E4 13 kDa protei 1.9 6.5 1
DUF2581 Protein of unknown function (DUF2581) 1.6 6.6 1
MpPF1 M penetrans paralogue family 1 -0.9 6.8 1
Gp5_C Gp5 C-terminal repeat (3 copies) 3.3 6.8 2
COesterase Carboxylesterase -1.7 6.9 1
Hum_adeno_E3A Human adenovirus early E3A glycoprote 0.5 7.1 1
Ribosomal_L35p Ribosomal protein L35 2.0 7.2 1
RE_R_Pab1 R.Pab1 restriction endonuclease 0.5 7.4 1
DUF2266 Predicted integral membrane protein ( 1.4 7.4 1
DUF1434 Protein of unknown function (DUF1434) -0.4 7.6 1
Ribosomal_L29 Ribosomal L29 protein 3.0 7.7 1
Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C- 1.1 8 1
Big_2 Bacterial Ig-like domain (group 2) 1.7 8.1 2
Rib Rib/alpha-like repeat 2.5 8.2 1
Flagellin_IN Flagellin hook IN motif 2.3 8.4 4
CoaE Dephospho-CoA kinase 0.7 8.5 1
Str_synth Strictosidine synthase 2.1 8.5 1
Glyco_hydro_56 Hyaluronidase -0.2 8.7 1
DUF1703 Protein of unknown function (DUF1703) 1.7 8.8 1
YbbR YbbR-like protein 1.5 8.9 1
Raffinose_syn Raffinose synthase or seed inhibition -1.5 9 1
SipA Salmonella invasion protein A -1.0 9.1 1
Pyocin_S S-type Pyocin 0.5 9.4 1
Bt_P21 Bacillus thuringiensis P21 molecular -1.1 9.5 1
Spore_GerAC Spore germination B3/ GerAC like, C-t 0.6 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF1951 1/1 1 16 [. 1 16 [. 1.4 3
DUF159 1/1 45 56 .. 270 281 .] 0.6 2.1
DUF2603 1/1 104 117 .. 101 114 .. 2.0 2.8
YlaC 1/1 105 112 .. 1 8 [. 4.5 0.86
Spore_YhcN_YlaJ 1/1 133 160 .. 183 210 .] 1.1 5.4
DUF1901 1/1 143 157 .. 90 104 .] 5.1 0.81
DUF2581 1/1 205 224 .. 1 20 [. 1.6 6.6
PPC 1/1 268 340 .. 1 85 [] 13.6 0.0033
Hid1 1/1 276 288 .. 773 785 .] -0.1 2.7
Cna_B 1/1 278 315 .. 1 36 [. 3.6 1.5
CUB_2 1/1 283 314 .. 56 91 .. 5.3 1
Peptidase_M8 1/1 295 325 .. 640 676 .] -0.6 4
MORN_2 1/2 345 361 .. 1 17 [. 1.9 26
SipA 1/1 416 453 .. 679 713 .] -1.0 9.1
Flagellin_IN 1/4 458 478 .. 1 23 [. 0.4 30
Glyco_hydro_56 1/1 459 468 .. 339 348 .] -0.2 8.7
Cadherin 1/5 477 564 .. 1 107 [] 38.5 2.5e-10
He_PIG 1/4 492 501 .. 52 61 .] 2.4 6.6
Bt_P21 1/1 498 529 .. 1 31 [. -1.1 9.5
Flagellin_IN 2/4 592 650 .. 1 63 [] 1.5 15
DUF1434 1/1 655 663 .. 1 9 [. -0.4 7.6
Big_2 1/2 695 726 .. 53 90 .] 1.6 9
DUF1522 1/3 701 709 .. 110 118 .] 1.0 9
PKD 1/5 724 751 .. 1 38 [. 0.5 13
MORN_2 2/2 733 754 .. 1 22 [] 9.3 0.21
DUF2266 1/1 765 775 .. 1 11 [. 1.4 7.4
DUF1400 1/1 803 818 .. 1 17 [. 2.3 3.1
EMP24_GP25L 1/1 803 857 .. 21 69 .. 3.5 1.6
DoxA 1/1 811 829 .. 127 146 .] 1.0 6.2
Peptidase_C25_C 1/1 825 845 .. 62 82 .] 3.2 2
DUF1522 2/3 830 837 .. 111 118 .] 0.7 11
COesterase 1/1 986 1008 .. 564 591 .] -1.7 6.9
Spore_GerAC 1/1 988 1001 .. 167 180 .] 0.6 10
Flavi_propep 1/1 1029 1056 .. 1 28 [. 6.7 0.38
OprB 1/1 1103 1132 .. 330 362 .. 1.8 2.2
SEA 1/1 1119 1154 .. 84 121 .] 3.1 3.1
Reovirus_L2 1/1 1163 1192 .. 1063 1092 .. -1.5 5.3
Hum_adeno_E3A 1/1 1170 1189 .. 1 21 [. 0.5 7.1
ChlamPMP_M 1/1 1204 1224 .. 160 179 .] 2.5 4.9
Drmip_Hesp 1/1 1212 1238 .. 67 93 .. 2.2 4.2
Bac_surface_Ag 1/1 1233 1304 .. 1 35 [. 5.4 0.25
FlaE 1/1 1236 1268 .. 72 102 .] 1.5 6.3
BiPBP_C 1/2 1245 1263 .. 77 94 .] 8.8 0.059
Cadherin 2/5 1246 1266 .. 78 107 .] 5.4 0.79
PKD 2/5 1246 1265 .. 73 92 .] 1.0 8.8
Cadherin 3/5 1282 1305 .. 1 24 [. 3.4 3
SBBP 1/1 1356 1381 .. 1 27 [. 9.8 0.06
Porin_2 1/1 1366 1401 .. 465 505 .] 0.8 4.3
Big_1 1/1 1368 1414 .. 26 74 .. 5.0 0.37
Raffinose_syn 1/1 1373 1387 .. 1 16 [. -1.5 9
Metalloenzyme 1/1 1376 1405 .. 1 30 [. 3.9 1.3
Flagellin_IN 3/4 1386 1406 .. 1 28 [. 0.4 30
Cadherin 4/5 1423 1466 .. 17 54 .. 0.5 20
He_PIG 2/4 1458 1496 .. 28 61 .] 2.9 4.8
Pyocin_S 1/1 1458 1471 .. 59 72 .. 0.5 9.4
YbbR 1/1 1476 1507 .. 54 93 .] 1.5 8.9
Big_2 2/2 1486 1502 .. 74 90 .] 0.2 23
PKD 3/5 1488 1507 .. 73 92 .] 4.5 0.78
Ribosomal_L35p 1/1 1557 1563 .. 1 7 [. 2.0 7.2
DUF2584 1/1 1600 1616 .. 14 30 .. 1.8 4.8
Flagellin_IN 4/4 1623 1652 .. 1 30 [. 0.1 37
CVNH 1/1 1632 1648 .. 1 17 [. 4.0 1.6
RE_R_Pab1 1/1 1683 1691 .. 126 134 .] 0.5 7.4
Gp5_C 1/2 1735 1752 .. 1 18 [. 2.1 16
DUF1983 1/1 1763 1773 .. 27 37 .. 2.1 4.7
DUF2334 1/1 1763 1784 .. 197 218 .. 1.4 2
HgmA 1/1 1765 1781 .. 1 22 [. -0.1 5.9
Adeno_E4 1/1 1803 1809 .. 1 7 [. 1.9 6.5
Invasin_D3 1/1 1851 1862 .. 1 12 [. 3.1 2.2
Urease_beta 1/1 1884 1901 .. 4 21 .. 3.8 2.5
CoaE 1/1 1982 1991 .. 177 187 .] 0.7 8.5
PKD 4/5 1991 2011 .. 71 92 .] 2.2 3.8
DUF1148 1/1 2023 2032 .. 104 114 .] 1.6 4.7
Gp5_C 2/2 2047 2071 .. 1 24 [] 1.2 31
F5_F8_type_C 1/1 2107 2142 .. 1 40 [. 2.8 2.7
Orn_DAP_Arg_deC 1/1 2131 2153 .. 135 156 .] 1.1 8
Cadherin 5/5 2147 2174 .. 69 107 .] 1.6 9.7
Rib 1/1 2148 2159 .. 59 70 .] 2.5 8.2
Glyco_hydro_12 1/1 2149 2179 .. 1 33 [. 1.7 5.7
BiPBP_C 2/2 2155 2169 .. 79 94 .] 1.3 8.8
DUF1522 3/3 2172 2179 .. 111 118 .] 0.7 11
He_PIG 3/4 2215 2255 .. 1 61 [] 40.5 1.1e-10
Str_synth 1/1 2223 2234 .. 1 12 [. 2.1 8.5
PKD 5/5 2238 2266 .. 65 92 .] 1.7 5.6
CDC24 1/1 2256 2266 .. 82 92 .] 1.7 5.9
MpPF1 1/1 2360 2375 .. 424 439 .] -0.9 6.8
He_PIG 4/4 2419 2445 .. 1 39 [. 15.7 0.0012
DUF1703 1/1 2432 2446 .. 102 116 .] 1.7 8.8
DUF2234 1/1 2432 2443 .. 1 12 [. 2.2 3.7
Ribosomal_L29 1/1 2476 2490 .. 1 15 [. 3.0 7.7
Phage_cap_P2 1/1 2502 2516 .. 1 15 [. 1.2 5.2
Alignments of top-scoring domains:
DUF1951: domain 1 of 1, from 1 to 16: score 1.4, E = 3
CS --S-SHHHHHHHHHHT
*->mEqnnlKEeLvsvFek<-*
m + nlK ++sv e+
gi|1577372 1 MKRRNLKKPVISVLEQ 16
DUF159: domain 1 of 1, from 45 to 56: score 0.6, E = 2.1
CS ...........E
*->StaVNnprNdgp<-*
St VN + N+++
gi|1577372 45 STTVNDVTNNSA 56
DUF2603: domain 1 of 1, from 104 to 117: score 2.0, E = 2.8
*->AmdEIkklaakdgn<-*
+mdEIk++ ++++n
gi|1577372 104 SMDEIKSILQNQTN 117
YlaC: domain 1 of 1, from 105 to 112: score 4.5, E = 0.86
*->MdeIkrLL<-*
MdeIk++L
gi|1577372 105 MDEIKSIL 112
Spore_YhcN_YlaJ: domain 1 of 1, from 133 to 160: score 1.1, E = 5.4
*->niadgisnGrPvsgfgdeieeiirrifp<-*
+++++i n + +++f++ +e + +++
gi|1577372 133 TVGNDILNKNTLQNFDEVLESMKSSLTQ 160
DUF1901: domain 1 of 1, from 143 to 157: score 5.1, E = 0.81
CS -HHHHHHHHHHHHHH
*->TKeeyeeVlEamksy<-*
T+ + eVlE mks+
gi|1577372 143 TLQNFDEVLESMKSS 157
DUF2581: domain 1 of 1, from 205 to 224: score 1.6, E = 6.6
*->skpWeLevrPhftprfAwia<-*
+ +W+Le+++ + +A+++
gi|1577372 205 GGDWDLEAKSGTIETTAIVV 224
PPC: domain 1 of 1, from 268 to 340: score 13.6, E = 0.0033
CS -EEEEEEEESTTCE EEEEEECTSSS...S...CCEEEEEEECCCS
*->dvdvysFtvpaggt.lsisldggsslrslsgnGdadtlLywlldgd.
+ d y+ + a+gt++++++ g+ +d++++ ++d+++
gi|1577372 268 YNDLYTLSGVANGTqVKLYIAQGT---------LSDPYIQ-VTDSNg 304
CS ESSSSTTCE-.... .ECCTTEEEEEECC.-SEEEEEEEEE
pslsaydaystTrd.vdnggsdelisftapeaGtYyirVyg<-*
+++ + d+++ d+ + +g+d +++ft +++Y ir +
gi|1577372 305 TVIVQDDDSG---DsGTANGYDAYVKFTW--NNNYTIRATT 340
Hid1: domain 1 of 1, from 276 to 288: score -0.1, E = 2.7
*->gvWngTdvKLFev<-*
gv+ngT vKL
gi|1577372 276 GVANGTQVKLYIA 288
Cna_B: domain 1 of 1, from 278 to 315: score 3.6, E = 1.5
CS -TT-EEEEEETTEEE E--TTSEEEEEEE....-SEE
*->LeGAeftLldkdgnv......tTdenGkytftnLPKykppGd<-*
G ++L+ + g+ +++ ++Td+nG++ + + ++Gd
gi|1577372 278 ANGTQVKLYIAQGTLsdpyiqVTDSNGTVIVQDD----DSGD 315
CUB_2: domain 1 of 1, from 283 to 314: score 5.3, E = 1
*->AkvtisaktddnndssitvtDslgnsfeyvtssdse<-*
+k++i t + d +i+vtDs+g++ v++ ds+
gi|1577372 283 VKLYIAQGTLS--DPYIQVTDSNGTV--IVQDDDSG 314
Peptidase_M8: domain 1 of 1, from 295 to 325: score -0.6, E = 4
*->pyvEvCqsnGPvkgivDyegdvvSpssadssagleaa<-*
py v snG v+++ D gd ++++ g +a
gi|1577372 295 PYIQVTDSNGTVIVQDDDSGD------SGTANGYDAY 325
MORN_2: domain 1 of 2, from 345 to 361: score 1.9, E = 26
*->keGeekfyyenGklkee<-*
G+++ y ++G l+++
gi|1577372 345 AVGTYTIYTDTGTLVIK 361
SipA: domain 1 of 1, from 416 to 453: score -1.0, E = 9.1
*->LgLkadeeiraepayiy...laaKpvvdsvvktvdgLh<-*
L + a+++++ +p++ y ++l + + v++ dg++
gi|1577372 416 LSVSANGSWTWAPNNAYinsLTSNATTSYNVLVSDGIN 453
Flagellin_IN: domain 1 of 4, from 458 to 478: score 0.4, E = 30
*->tltinggggkensvadgvdisls<-*
t+tin+++ +++ a++++ s s
gi|1577372 458 TFTINITSATND--APVITSSNS 478
Glyco_hydro_56: domain 1 of 1, from 459 to 468: score -0.2, E = 8.7
CS HHHHCT----
*->YivNVTlAak<-*
+++N+T+A++
gi|1577372 459 FTINITSATN 468
Cadherin: domain 1 of 5, from 477 to 564: score 38.5, E = 2.5e-10
CS --EEE-SS...S---EEEEE---S..-TTTT----------SS----
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
s+s+ En++++ t+tAtDa N ++Ysi+g++ ++ F
gi|1577372 477 NSVSFQENTATNVAAYTITATDAE-----NNTLTYSISGTD-SQYFN 517
CS B-TTSSEEE..E---S---S.....S-B--EEE----.........S---
IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls
I++ tG+ i+ + + D+E+ Y+L + A g++ls
gi|1577372 518 INSTTGQ----ITFKNSPDYETK--TSYSLMITALETN-------GTGLS 554
CS EEEE--EEE-
statvtitVl<-*
+ ++ti++
gi|1577372 555 ASKMITISIA 564
He_PIG: domain 1 of 4, from 492 to 501: score 2.4, E = 6.6
*->ftvtatdgsg<-*
+t+tatd+++
gi|1577372 492 YTITATDAEN 501
Bt_P21: domain 1 of 1, from 498 to 529: score -1.1, E = 9.5
*->daEnrvF.YKiFtlknnnlCknstLLEkvFKn<-*
daEn +Y i ++ + +nst FKn
gi|1577372 498 DAENNTLtYSISGTDSQYFNINSTTGQITFKN 529
Flagellin_IN: domain 2 of 4, from 592 to 650: score 1.5, E = 15
*->tltinggggkensvadgvdislsag.dslaaladaINsaaaktGVsA
+lt +++e+s++ + is+s+g s +++ + +N+++ ++ A
gi|1577372 592 SLT---IDKGETSTLASAQISISSGfISGGDILNFVNDGSTMGNIVA 635
svdadtnggrLvltstt<-*
s+d g L+lts++
gi|1577372 636 SYDSAN--GVLTLTSSG 650
DUF1434: domain 1 of 1, from 655 to 663: score -0.4, E = 7.6
*->MalWrCDLR<-*
a+W++ LR
gi|1577372 655 LAQWQSALR 663
Big_2: domain 1 of 2, from 695 to 726: score 1.6, E = 9
CS EEE....TTTEEEEE-SSS-EEEEEEETT.TEEEEEEE
*->tVsntnSgstGlVtalakGtatItatsgdgnksasvtv<-*
tV+ +st++Vt+++ tI++ + + +++ + t
gi|1577372 695 TVD----TSTLKVTGVN-DAPTISVSTPS-GFTETTTM 726
DUF1522: domain 1 of 3, from 701 to 709: score 1.0, E = 9
*->LsItGtgdl<-*
L++tG +d+
gi|1577372 701 LKVTGVNDA 709
PKD: domain 1 of 5, from 724 to 751: score 0.5, E = 13
CS EESS.....SSSEBTTEEEEEEECT.B.TT.SSECEEE
*->vsasaveegpsvvalgetVtFtassSydpdpGspvsys<-*
+ ++++ ++ tVtF++ + + + +++ys
gi|1577372 724 TTMD-----KQTLSQNGTVTFSDVD----N-NVNITYS 751
MORN_2: domain 2 of 2, from 733 to 754: score 9.3, E = 0.21
*->keGeekfyyenGklkeeieykn<-*
++G+++f + + +++++++y+n
gi|1577372 733 QNGTVTFSDVDNNVNITYSYNN 754
DUF2266: domain 1 of 1, from 765 to 775: score 1.4, E = 7.4
*->aalgtGLvAGv<-*
++l ++L+AG+
gi|1577372 765 STLSSALIAGF 775
DUF1400: domain 1 of 1, from 803 to 818: score 2.3, E = 3.1
*->AAEtivLtYgPfgeFsi<-*
A Eti+L+Y ++++ +i
gi|1577372 803 AGETITLSYNVIAT-DI 818
EMP24_GP25L: domain 1 of 1, from 803 to 857: score 3.5, E = 1.6
*->kgtkvtgsYqVi...........didvtvkdPfdngkrvlykkerks
+g+++t sY Vi ++ + + ++i++t+++++ + ++ ++
gi|1577372 803 AGETITLSYNVIatdiagatamtTITFTITGTN--DA-PVFGT--VT 844
eGdftFtalesGe<-*
G t+ta+++G+
gi|1577372 845 TGSTTITAPTAGT 857
DoxA: domain 1 of 1, from 811 to 829: score 1.0, E = 6.2
*->YevklydPasGssaaakqkf<-*
Y v+ +d + G++a ++f
gi|1577372 811 YNVIATD-IAGATAMTTITF 829
Peptidase_C25_C: domain 1 of 1, from 825 to 845: score 3.2, E = 2
CS SEEEEEEE-TTB--EEEEEEE
*->gnltltvvgyNkltVIKqIkv<-*
++ t t++g N +V ++ +
gi|1577372 825 TTITFTITGTNDAPVFGTVTT 845
DUF1522: domain 2 of 3, from 830 to 837: score 0.7, E = 11
*->sItGtgdl<-*
+ItGt+d+
gi|1577372 830 TITGTNDA 837
COesterase: domain 1 of 1, from 986 to 1008: score -1.7, E = 6.9
CS EEEEECSSCEECSC EECCSCC..HHHHH
*->kYyllntllnittk.lreedPrkvkcafw<-*
kY++ nt++ ++++++ e+ +fw
gi|1577372 986 KYIKANTYIENIGStSTENL------RFW 1008
Spore_GerAC: domain 1 of 1, from 988 to 1001: score 0.6, E = 10
*->VnVnvkIrrtGlts<-*
+++n++I++ G ts
gi|1577372 988 IKANTYIENIGSTS 1001
Flavi_propep: domain 1 of 1, from 1029 to 1056: score 6.7, E = 0.38
*->trdgeplmivnaterdkallfktenGvN<-*
+dge mi n +e++ka+ + t++G N
gi|1577372 1029 IVDGEFQMISNSSEQAKAIKIYTGAGAN 1056
OprB: domain 1 of 1, from 1103 to 1132: score 1.8, E = 2.2
*->FgragYtNvt.vadgdtnlyFTDidyavslGltd<-*
+g a++tN+++va+g t + +d+++ +G ++
gi|1577372 1103 GGYAMFTNLNnVATGQTVM----FDWYYAAGAVS 1132
SEA: domain 1 of 1, from 1119 to 1154: score 3.1, E = 3.1
*->dviFr.ptteesavdkteiseeleaalrsqsgnlkidss<-*
+v F+ +++ +++ +i++ le+a+ s+nl+++ss
gi|1577372 1119 TVMFDwYYAAGAVSELSDITSSLEQAT---STNLQENSS 1154
Reovirus_L2: domain 1 of 1, from 1163 to 1192: score -1.5, E = 5.3
CS EEES--TT-EEEEESSSSEEEEGGGTT.S-
*->tildfedqdvlevtlngVevftttdvNvvs<-*
ti+d++ +d+++vt +V++ t t+ +++
gi|1577372 1163 TITDLDSTDSVNVTVSSVQINTPTGLTLPA 1192
Hum_adeno_E3A: domain 1 of 1, from 1170 to 1189: score 0.5, E = 7.1
*->mtdttnapttdyrnatAtGLt<-*
td++n ++ + +t tGLt
gi|1577372 1170 -TDSVNVTVSSVQINTPTGLT 1189
ChlamPMP_M: domain 1 of 1, from 1204 to 1224: score 2.5, E = 4.9
*->d.tsggtantqnktltanWtp<-*
+ ts+ +++ ++ t t++W++
gi|1577372 1204 QiTSNPVITSGSTTGTVSWNF 1224
Drmip_Hesp: domain 1 of 1, from 1212 to 1238: score 2.2, E = 4.2
*->SdgsytvdipsdlppgdGYQINfiSng<-*
++gs t +++++ ++g++Y +Nf++ g
gi|1577372 1212 TSGSTTGTVSWNFNSGSDYTFNFLGRG 1238
Bac_surface_Ag: domain 1 of 1, from 1233 to 1304: score 5.4, E = 0.25
*->NlfGrGeslsvslsl................................
N++GrG++l++ ++l+ +++++ + ++ + + ++ ++ ++ ++
gi|1577372 1233 NFLGRGQTLTLLYTLtatdshgatattvvtisidgandaptvvvdsl 1279
..........isnlntAtkeqsfslsftdP<-*
+++ + +++ s t ++s +ls+tdP
gi|1577372 1280 dsdvatisetNS-----TISTSGTLSITDP 1304
FlaE: domain 1 of 1, from 1236 to 1268: score 1.5, E = 6.3
*->aapvsitLdl.lTqfag.stfs.tvsavsaQDGy<-*
+ ++++tL ++lT ++++++++tv ++s DG+
gi|1577372 1236 GRGQTLTLLYtLTATDShGATAtTVVTIS-IDGA 1268
BiPBP_C: domain 1 of 2, from 1245 to 1263: score 8.8, E = 0.059
*->htLtVvDadGrsdrv.Vrf<-*
+tLt++D +G++++ V++
gi|1577372 1245 YTLTATDSHGATATTvVTI 1263
Cadherin: domain 2 of 5, from 1246 to 1266: score 5.4, E = 0.79
CS EEE----.........S---EEEE--EEE-
*->tveAtDadpllasgggpplsstatvtitVl<-*
t+ AtD+ ++ ++t++vti++
gi|1577372 1246 TLTATDS---------HGATATTVVTISID 1266
PKD: domain 2 of 5, from 1246 to 1265: score 1.0, E = 8.8
CS EEEEEETTCEEEEEEEEEEE
*->tLtvsngvgsasattttvtV<-*
tLt++++ g++++t +t+ +
gi|1577372 1246 TLTATDSHGATATTVVTISI 1265
Cadherin: domain 3 of 5, from 1282 to 1305: score 3.4, E = 3
CS --EEE-SS...S---EEEEE---S
*->ysasvpEnapvGtevltvtAtDaD<-*
+a+++E+ ++ ++ +t+ +tD+D
gi|1577372 1282 DVATISETNSTISTSGTLSITDPD 1305
SBBP: domain 1 of 1, from 1356 to 1381: score 9.8, E = 0.06
*->qWstqlGPgpgasifgngIavDsnGNi<-*
q++ +l+ ++ ++++ Iav +++N+
gi|1577372 1356 QYFNYLS-VGETLTITYTIAVSDSSNA 1381
Porin_2: domain 1 of 1, from 1366 to 1401: score 0.8, E = 4.3
*->taevnYtdldqkystva.svrgsdakpgteyeakkqDsvsGi<-*
t++++Yt v +s +++++k++t + +++D+vs
gi|1577372 1366 TLTITYTI------AVSdSSNAVTNKTITINITGTNDTVSLN 1401
Big_1: domain 1 of 1, from 1368 to 1414: score 5.0, E = 0.37
CS -EEEEEEEEETTTEE-TT-EEEE.....EESSSEES-S.E .EEE
*->aiTlTAtVkDanGnPVagqeVtFtvpsdvsssgtlsngnt...katT
+iT+T+ V D + n+V ++++t+++ ++++ t+s + t+ +++ T
gi|1577372 1368 TITYTIAVSD-SSNAVTNKTITINI---TGTNDTVSLN-TpatIYYT 1409
CS -TTSE
danGk<-*
d++G+
gi|1577372 1410 DTDGN 1414
Raffinose_syn: domain 1 of 1, from 1373 to 1387: score -1.5, E = 9
*->fslsdgklvvkngkti<-*
+++sd++++v n kti
gi|1577372 1373 IAVSDSSNAVTN-KTI 1387
Metalloenzyme: domain 1 of 1, from 1376 to 1405: score 3.9, E = 1.3
CS TTTTHHHHHHHHHHHHHH--SEEEEEE-HH
*->emsaaevadklilaielgeyDfifvNfanp<-*
+s++ v+ k+i + g++D + +N++++
gi|1577372 1376 SDSSNAVTNKTITINITGTNDTVSLNTPAT 1405
Flagellin_IN: domain 3 of 4, from 1386 to 1406: score 0.4, E = 30
*->tltinggggkensvadgvdislsagdsl<-*
t+tin++g++ + +sl+ +++
gi|1577372 1386 TITINITGTNDT-------VSLNTPATI 1406
Cadherin: domain 4 of 5, from 1423 to 1466: score 0.5, E = 20
CS EEEE---S..-TTTT----------S S----B-TTSS
*->tvtAtDaDdPlgpNgrirYsilggnp..........ggwFrIdpdtG
++tA+DaD N+ +Y i +g+ ++++ ++++++g +++++tG
gi|1577372 1423 QLTASDAD----KNTTFTYGIDNGSIsgttvtktgtYGVLTLNTATG 1465
CS E
d<-*
+
gi|1577372 1466 V 1466
He_PIG: domain 2 of 4, from 1458 to 1496: score 2.9, E = 4.8
*->LtLdsstGritGtPtptvqp......Gsytftvtatdgsg<-*
LtL+ +tG +t tP+++ + + +++ s tftvt+ dg g
gi|1577372 1458 LTLNTATGVYTYTPNSN-AInaltsnSSETFTVTVNDGNG 1496
Pyocin_S: domain 1 of 1, from 1458 to 1471: score 0.5, E = 9.4
*->atldsatGrYevTl<-*
+tl+ atG+Y++T+
gi|1577372 1458 LTLNTATGVYTYTP 1471
YbbR: domain 1 of 1, from 1476 to 1507: score 1.5, E = 8.9
*->lsglkeGehsvsvtvsllapdgnvevevnvtiPstvtVti<-*
++ l+ + s t+++ + dgn+++ ++ +++i
gi|1577372 1476 INALTS---NSSETFTVTVNDGNGSID-----TKSLVIQI 1507
Big_2: domain 2 of 2, from 1486 to 1502: score 0.2, E = 23
CS EEEEEETT.TEEEEEEE
*->tItatsgdgnksasvtv<-*
t t+t++dgn s + +
gi|1577372 1486 TFTVTVNDGNGSIDTKS 1502
PKD: domain 3 of 5, from 1488 to 1507: score 4.5, E = 0.78
CS EEEEEETTCEEEEEEEEEEE
*->tLtvsngvgsasattttvtV<-*
t+tv++g+gs +++++ + +
gi|1577372 1488 TVTVNDGNGSIDTKSLVIQI 1507
Ribosomal_L35p: domain 1 of 1, from 1557 to 1563: score 2.0, E = 7.2
*->MKTrkgA<-*
+KT+kgA
gi|1577372 1557 IKTNKGA 1563
DUF2584: domain 1 of 1, from 1600 to 1616: score 1.8, E = 4.8
*->kGkEkRlhieeNiFqLe<-*
+GkE R+h+ +N + L+
gi|1577372 1600 NGKELRIHLNDNAYSLQ 1616
Flagellin_IN: domain 4 of 4, from 1623 to 1652: score 0.1, E = 37
*->tltinggggkensvadgvdislsagdslaa<-*
+t++ + ++n+ a ++di +++g + ++
gi|1577372 1623 AITFSNPSDNFNDSARSIDIKVNDGGNGGE 1652
CVNH: domain 1 of 1, from 1632 to 1648: score 4.0, E = 1.6
CS BGGGGEEEEEEE....T
RF xxxxxxxxxxxxxxxxx
*->sFsqSardirievrgdg<-*
+F +Sar i i+v ++g
gi|1577372 1632 NFNDSARSIDIKVNDGG 1648
RE_R_Pab1: domain 1 of 1, from 1683 to 1691: score 0.5, E = 7.4
*->iLkkIlGke<-*
+++kI+G++
gi|1577372 1683 LVEKIIGQN 1691
Gp5_C: domain 1 of 2, from 1735 to 1752: score 2.1, E = 16
CS S-EEEEESS-EEEEESSE
*->GnesltVkGnrtvtVgGn<-*
+ +++ +G+rtvt+ G+
gi|1577372 1735 NSSQIIGNGSRTVTITGT 1752
DUF1983: domain 1 of 1, from 1763 to 1773: score 2.1, E = 4.7
*->anGrkYvAGiG<-*
+nG +YvAG+G
gi|1577372 1763 SNGITYVAGFG 1773
DUF2334: domain 1 of 1, from 1763 to 1784: score 1.4, E = 2
*->sGNlwYvadfpfsYigPrdryl<-*
s+ +Yva f ++Yi+P++ yl
gi|1577372 1763 SNGITYVAGFGNDYITPGADYL 1784
HgmA: domain 1 of 1, from 1765 to 1781: score -0.1, E = 5.9
CS ---EEE-TT--EEEE-TTSTT-
*->elkYlsGFGnefsssdEAvpGA<-*
+Y GFGn++ + pGA
gi|1577372 1765 GITYVAGFGNDYIT-----PGA 1781
Adeno_E4: domain 1 of 1, from 1803 to 1809: score 1.9, E = 6.5
*->MpLPsLP<-*
M+LP++P
gi|1577372 1803 MVLPAIP 1809
Invasin_D3: domain 1 of 1, from 1851 to 1862: score 3.1, E = 2.2
CS --TTT-EEEES-
*->PDvtrSSFtVSt<-*
PD+t+SS ++ t
gi|1577372 1851 PDITNSSGNITT 1862
Urease_beta: domain 1 of 1, from 1884 to 1901: score 3.8, E = 2.5
CS -EE--SSEEETTTTS-EE
*->EiilkdgdIelNaGreti<-*
+++l++g+I lN+G++++
gi|1577372 1884 GYQLEHGKIILNEGKNRV 1901
CoaE: domain 1 of 1, from 1982 to 1991: score 0.7, E = 8.5
CS EEEE-.SSHHH
*->dVldNdsglae<-*
dV+dN +++ +
gi|1577372 1982 DVIDN-TQILD 1991
PKD: domain 4 of 5, from 1991 to 2011: score 2.2, E = 3.8
CS EEEEEEEETTCEEEEEEEEEEE
*->tVtLtvsngvgsasattttvtV<-*
++tL+v+ng+ s+ t +tV
gi|1577372 1991 DLTLNVTNGKLELSQM-TDLTV 2011
DUF1148: domain 1 of 1, from 2023 to 2032: score 1.6, E = 4.7
*->LRGsALAsLqn<-*
+RGs LAsLqn
gi|1577372 2023 IRGS-LASLQN 2032
Gp5_C: domain 2 of 2, from 2047 to 2071: score 1.2, E = 31
CS S-EEEEESS-EEEEES SEEEEEES
*->GnesltVkGnrtvtVg.GnqTtsVg<-*
G+++l++k n ++++g+Gn ++++
gi|1577372 2047 GSDTLSIKLNDNTNIGeGNSLEDIK 2071
F5_F8_type_C: domain 1 of 1, from 2107 to 2142: score 2.8, E = 2.7
CS CEEESS-STTCSS.B....G-GGGGCCTSSSSS ... ...T
*->qitaSSeesgsggagrarLwspasaalDGngnt.ygh.svsp<-*
i +SS + + +g ++pa++ l+++g+++++++s+++
gi|1577372 2107 DIDSSSITFSING------NAPAGFILHNDGSYsFDSsSYDY 2142
Orn_DAP_Arg_deC: domain 1 of 1, from 2131 to 2153: score 1.1, E = 8
CS SSSSGGG-B -TTT----EEEEE
*->GAYteslas.nFNgfprpaeVlv<-*
G Y + +s + g++ ++++++
gi|1577372 2131 GSYSFDSSSyDYIGRGETDTIII 2153
Cadherin: domain 5 of 5, from 2147 to 2174: score 1.6, E = 9.7
CS ....S-B--EEE----.........S---EEEE--EEE-
*->eifngeYeLtveAtDadpllasgggpplsstatvtitVl<-*
e+ ++ + v +tDa +l+ ta it++
gi|1577372 2147 ET--DTIIIPVTVTDA---------EGLTKTANFSITIT 2174
Rib: domain 1 of 1, from 2148 to 2159: score 2.5, E = 8.2
*->kDeVpVtVtVtd<-*
+D++ ++VtVtd
gi|1577372 2148 TDTIIIPVTVTD 2159
Glyco_hydro_12: domain 1 of 1, from 2149 to 2179: score 1.7, E = 5.7
CS EC-TTSEECCCGCBEEEEEEEEEEECSSEEEEE
*->egtnLpvqVssisSiptsvsysitdetgvraNa<-*
++++pv+V +++ + ++ +si +tg+++ a
gi|1577372 2149 DTIIIPVTVTDAEGLTKTANFSI-TITGTND-A 2179
BiPBP_C: domain 2 of 2, from 2155 to 2169: score 1.3, E = 8.8
*->LtVvDadGrsdrvVrf<-*
+tV+Da G + + +f
gi|1577372 2155 VTVTDAEGLTKTA-NF 2169
DUF1522: domain 3 of 3, from 2172 to 2179: score 0.7, E = 11
*->sItGtgdl<-*
+ItGt+d+
gi|1577372 2172 TITGTNDA 2179
He_PIG: domain 3 of 4, from 2215 to 2255: score 40.5, E = 1.1e-10
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
ty + ++LPsGLt+d+ tG+i+G+++++
gi|1577372 2215 TYQA-----------------SNLPSGLTIDPNTGIISGRVSQS--- 2241
Gsytftvtatdgsg<-*
G++ + +ta d++g
gi|1577372 2242 GNFVISITAIDSEG 2255
Str_synth: domain 1 of 1, from 2223 to 2234: score 2.1, E = 8.5
*->naldVddetGvv<-*
+l++d++tG++
gi|1577372 2223 SGLTIDPNTGII 2234
PKD: domain 5 of 5, from 2238 to 2266: score 1.7, E = 5.6
CS .. SEEEEEEEEEEETTCEEEEEEEEEEE
*->Vt.pGtYtVtLtvsngvgsasattttvtV<-*
V++ G++ ++ t+ ++ g ++ t ++ V
gi|1577372 2238 VSqSGNFVISITAIDSEGVKVTRTYNMLV 2266
CDC24: domain 1 of 1, from 2256 to 2266: score 1.7, E = 5.9
*->vKVlkvvNrlL<-*
vKV+++ N+l+
gi|1577372 2256 VKVTRTYNMLV 2266
MpPF1: domain 1 of 1, from 2360 to 2375: score -0.9, E = 6.8
*->tttaKdiSFdVkltvt<-*
++++++i+ +V l+v+
gi|1577372 2360 SNDSRTIQANVDLNVS 2375
He_PIG: domain 4 of 4, from 2419 to 2445: score 15.7, E = 0.0012
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritG<-*
+y + t +g++LP GL++d+ tG+i+G
gi|1577372 2419 SYVV------------TQIDGTALPVGLSFDPKTGNISG 2445
DUF1703: domain 1 of 1, from 2432 to 2446: score 1.7, E = 8.8
*->igivFdgktrnivee<-*
+g+ Fd+kt+ni
gi|1577372 2432 VGLSFDPKTGNISGK 2446
DUF2234: domain 1 of 1, from 2432 to 2443: score 2.2, E = 3.7
*->MaLkfhPkvGei<-*
++L+f Pk G+i
gi|1577372 2432 VGLSFDPKTGNI 2443
Ribosomal_L29: domain 1 of 1, from 2476 to 2490: score 3.0, E = 7.7
CS SCCTTTSCCHHHHHH
*->akELRekskeELeek<-*
+kEL++k+++E +e+
gi|1577372 2476 LKELKQKTQAEVNER 2490
Phage_cap_P2: domain 1 of 1, from 2502 to 2516: score 1.2, E = 5.2
*->rqkfnAYlaqlAklN<-*
qk+++Y + lAkl+
gi|1577372 2502 NQKLDNYGSHLAKLF 2516
//