hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 157963290.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|157963290|ref|YP_001503324.1|
Accession: [none]
Description: hypothetical protein Spea_3476 [Shewanella pealeana ATCC 700345]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF2318 Predicted membrane protein (DUF2318) 9.7 0.039 1
Nodulin Nodulin 1.6 1.2 1
DUF1314 Protein of unknown function (DUF1314) 2.5 1.7 1
Arena_glycoprot Arenavirus glycoprotein -0.1 2 1
HrpJ Hypersensitivity response secretion p 1.7 3.7 1
DUF832 Herpesvirus protein of unknown functi 0.9 6.6 1
Vps53_N Vps53-like, N-terminal -0.3 6.7 1
PDZ PDZ domain (Also known as DHR or GLGF 2.3 6.8 1
COG2 COG (conserved oligomeric Golgi) comp 1.5 7 1
RTX RTX N-terminal domain -1.8 7.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF2318 1/1 47 76 .. 1 30 [. 9.7 0.039
Nodulin 1/1 69 83 .. 1 15 [. 1.6 1.2
RTX 1/1 100 115 .. 1 16 [. -1.8 7.1
DUF832 1/1 111 135 .. 1 30 [. 0.9 6.6
COG2 1/1 116 131 .. 160 175 .] 1.5 7
PDZ 1/1 119 143 .. 61 86 .] 2.3 6.8
HrpJ 1/1 122 138 .. 66 98 .. 1.7 3.7
Vps53_N 1/1 144 166 .. 1 23 [. -0.3 6.7
DUF1314 1/1 161 173 .. 177 189 .] 2.5 1.7
Arena_glycoprot 1/1 223 232 .. 1 11 [. -0.1 2
Alignments of top-scoring domains:
DUF2318: domain 1 of 1, from 47 to 76: score 9.7, E = 0.039
*->RkalAkrltsrRlllftvlslliilaalLY<-*
R ++A t+rRl+ +++ ++++l+ lL+
gi|1579632 47 RGLIANKKTKRRLSHDFPVYWIVLLCLLLF 76
Nodulin: domain 1 of 1, from 69 to 83: score 1.6, E = 1.2
*->iLITLFLFIgAaVAE<-*
+L L+LFI a+AE
gi|1579632 69 VLLCLLLFINDAIAE 83
RTX: domain 1 of 1, from 100 to 115: score -1.8, E = 7.1
*->tlaniKsqlkqglkst<-*
tl++iKs+l ++ +s+
gi|1579632 100 TLTKIKSSLVKAEQSV 115
DUF832: domain 1 of 1, from 111 to 135: score 0.9, E = 6.6
*->MeltvpVagvteeneKEqYekwrnilsnFs<-*
e++v+ ++v++ +e ++ ++ls+Fs
gi|1579632 111 AEQSVSLIIVDSSLE-----QLEALLSGFS 135
COG2: domain 1 of 1, from 116 to 131: score 1.5, E = 7
*->lLldldhvveklEkll<-*
+L+ +d ++e+lE+ll
gi|1579632 116 SLIIVDSSLEQLEALL 131
PDZ: domain 1 of 1, from 119 to 143: score 2.3, E = 6.8
CS CTTSBHHHHHHHHHTCHSSEEEEEEE
*->lenlsheeavlalkgsggsevtLtvl<-*
+++ s+e+ ++l g +g ev+L++l
gi|1579632 119 IVDSSLEQLEALLSGFSG-EVHLLIL 143
HrpJ: domain 1 of 1, from 122 to 138: score 1.7, E = 3.7
*->atLaqqnrrlrtlLlqqgSPnLdayLegasgep<-*
++L+q L+a+L g+sge+
gi|1579632 122 SSLEQ----------------LEALLSGFSGEV 138
Vps53_N: domain 1 of 1, from 144 to 166: score -0.3, E = 6.7
*->kpdfsaleyInqLFPteqSLani<-*
+++ + e+Inq + e ++n+
gi|1579632 144 EDNMEPFEQINQALYQEPPYSNV 166
DUF1314: domain 1 of 1, from 161 to 173: score 2.5, E = 1.7
*->PtvsnsrilakGS<-*
P+ sn +i+ak+S
gi|1579632 161 PPYSNVSIVAKAS 173
Arena_glycoprot: domain 1 of 1, from 223 to 232: score -0.1, E = 2
*->MGQivsFfQEi<-*
GQ++++f+E+
gi|1579632 223 -GQFIGLFEEL 232
//