hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 15799917.fa
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Query sequence: gi|15799917|ref|NP_285929.1|
Accession: [none]
Description: hypothetical protein Z0268 [Escherichia coli O157:H7 EDL933]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RHS_repeat RHS Repeat 259.5 8.1e-75 16
RHS RHS protein 88.4 1.8e-27 3
PQQ PQQ enzyme repeat 6.6 0.46 1
PAAR_motif PAAR motif 7.3 0.55 1
gp12-short_mid Phage short tail fibre protein gp12, 4.2 0.96 1
UPF0278 UPF0278 family 4.0 1.3 1
Ribosomal_S7 Ribosomal protein S7p/S5e 3.9 1.4 1
DMAP_binding DMAP1-binding Domain 4.4 1.8 1
zf-XS XS zinc finger domain 2.8 2 1
UPF0257 Uncharacterised protein family (UPF02 0.7 2.3 1
DUF300 Domain of unknown function 1.4 2.5 1
DUF485 Protein of unknown function, DUF485 3.8 2.9 1
PQQ_N Pyrrolo-quinoline quinone coenzyme N- 4.3 3.2 1
MEF2_binding MEF2 binding 3.4 3.3 1
CmcI Cephalosporin hydroxylase 0.9 3.5 1
Ret_tiss Retinal tissue protein 2.0 3.6 1
FAD_binding_4 FAD binding domain 2.5 3.8 1
DUF1794 Domain of unknown function (DUF1794) 1.7 4 1
ORC3_N Origin recognition complex (ORC) subu 0.2 4.3 1
AMNp_N Bacterial AMP nucleoside phosphorylas 1.9 5 1
MGS MGS-like domain 3.0 5.4 1
Ring_hydroxyl_A Ring hydroxylating alpha subunit (cat 0.5 5.7 1
Herpes_UL33 Herpesvirus UL33-like protein 2.8 5.8 1
ANT Phage antirepressor protein KilAC dom 2.1 5.9 1
DUF820 Protein of unknown function (DUF820) 1.6 6.3 1
Paramecium_SA Paramecium surface antigen domain 1.2 6.4 1
SH3_3 Bacterial SH3 domain 2.7 6.5 1
Phospholip_A2_1 Phospholipase A2 1.4 6.9 1
Pectinesterase Pectinesterase -0.0 7.6 1
Herpes_pp38 Herpesvirus pp38 phosphoprotein 2.0 8 1
But2 Ubiquitin 3 binding protein But2 -0.6 8.2 1
NusG Transcription termination factor nusG 1.8 8.6 1
E_Pc_C Enhancer of Polycomb C-terminus -1.3 8.9 1
UPF0175 Uncharacterised protein family (UPF01 1.8 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PAAR_motif 1/1 2 13 .. 11 22 .. 7.3 0.55
Herpes_pp38 1/1 24 39 .. 30 45 .. 2.0 8
Herpes_UL33 1/1 120 131 .. 1 12 [. 2.8 5.8
ORC3_N 1/1 151 158 .. 357 364 .] 0.2 4.3
Ret_tiss 1/1 188 197 .. 15 24 .. 2.0 3.6
RHS_repeat 1/16 229 244 .. 24 44 .] 0.8 24
RHS_repeat 2/16 325 365 .. 1 44 [] 23.5 8.1e-06
RHS 1/3 369 383 .. 27 41 .] 0.3 24
RHS_repeat 3/16 370 406 .. 1 44 [] 14.7 0.0026
But2 1/1 382 389 .. 476 483 .] -0.6 8.2
RHS_repeat 4/16 434 472 .. 1 44 [] 33.0 1.7e-08
FAD_binding_4 1/1 461 476 .. 132 146 .] 2.5 3.8
RHS_repeat 5/16 474 493 .. 20 44 .] 7.3 0.32
RHS_repeat 6/16 498 537 .. 1 44 [] 20.7 5e-05
RHS_repeat 7/16 542 579 .. 1 44 [] 12.3 0.013
Phospholip_A2_1 1/1 545 570 .. 52 77 .. 1.4 6.9
Paramecium_SA 1/1 548 557 .. 1 10 [. 1.2 6.4
DUF820 1/1 563 574 .. 114 131 .] 1.6 6.3
RHS_repeat 8/16 584 621 .. 1 44 [] 30.0 1.2e-07
Pectinesterase 1/1 612 620 .. 1 9 [. -0.0 7.6
RHS 2/3 625 639 .. 27 41 .] 1.8 8
RHS_repeat 9/16 626 662 .. 1 44 [] 28.4 3.3e-07
RHS_repeat 10/16 667 703 .. 1 44 [] 17.4 0.00044
RHS_repeat 11/16 708 747 .. 1 44 [] 24.3 4.7e-06
RHS_repeat 12/16 753 799 .. 1 44 [] 8.2 0.18
PQQ 1/1 768 790 .. 16 37 .] 6.6 0.46
PQQ_N 1/1 799 810 .. 1 12 [. 4.3 3.2
DUF1794 1/1 814 832 .. 165 184 .] 1.7 4
CmcI 1/1 870 880 .. 254 264 .] 0.9 3.5
RHS_repeat 13/16 870 904 .. 1 44 [] 24.8 3.4e-06
UPF0257 1/1 872 894 .. 129 151 .. 0.7 2.3
MGS 1/1 906 914 .. 113 121 .] 3.0 5.4
DUF300 1/1 945 965 .. 294 315 .] 1.4 2.5
RHS_repeat 14/16 950 996 .. 1 44 [] 8.6 0.14
RHS_repeat 15/16 997 1021 .. 16 44 .] 3.1 5.2
zf-XS 1/1 1079 1086 .. 39 46 .] 2.8 2
DMAP_binding 1/1 1093 1120 .. 1 28 [. 4.4 1.8
UPF0175 1/1 1096 1113 .. 1 20 [. 1.8 9.7
MEF2_binding 1/1 1114 1144 .. 6 35 .] 3.4 3.3
E_Pc_C 1/1 1129 1134 .. 1 6 [. -1.3 8.9
RHS 3/3 1149 1189 .. 1 41 [] 86.4 8.2e-27
Ring_hydroxyl_A 1/1 1168 1188 .. 278 298 .] 0.5 5.7
RHS_repeat 16/16 1175 1192 .. 22 44 .] 2.5 7.6
SH3_3 1/1 1269 1277 .. 1 9 [. 2.7 6.5
gp12-short_mid 1/1 1278 1291 .. 1 14 [. 4.2 0.96
NusG 1/1 1282 1294 .. 93 108 .] 1.8 8.6
DUF485 1/1 1311 1319 .. 1 9 [. 3.8 2.9
ANT 1/1 1330 1348 .. 100 118 .] 2.1 5.9
Ribosomal_S7 1/1 1331 1345 .. 126 140 .. 3.9 1.4
UPF0278 1/1 1341 1354 .. 177 190 .. 4.0 1.3
AMNp_N 1/1 1380 1392 .. 153 165 .] 1.9 5
Alignments of top-scoring domains:
PAAR_motif: domain 1 of 1, from 2 to 13: score 7.3, E = 0.55
*->nGkPAARlGDsv<-*
+GkPAAR+GD++
gi|1579991 2 GGKPAARQGDMT 13
Herpes_pp38: domain 1 of 1, from 24 to 39: score 2.0, E = 8
*->AGtLIGkaikvqttvc<-*
AG+LIG+ ++v +vc
gi|1579991 24 AGVLIGAPTGVACSVC 39
Herpes_UL33: domain 1 of 1, from 120 to 131: score 2.8, E = 5.8
*->llwFepmlPrei<-*
++ Fep++P ei
gi|1579991 120 SIHFEPLFPGEI 131
ORC3_N: domain 1 of 1, from 151 to 158: score 0.2, E = 4.3
*->ysePLSvL<-*
+s+PLS+L
gi|1579991 151 SSQPLSAL 158
Ret_tiss: domain 1 of 1, from 188 to 197: score 2.0, E = 3.6
*->WPEqiPGvdE<-*
WPE+ PG dE
gi|1579991 188 WPERVPGADE 197
RHS_repeat: domain 1 of 16, from 229 to 244: score 0.8, E = 24
*->DaagrltaltlttstdasGtt<-*
D ag +t + td++G++
gi|1579991 229 DVAGAVTGV-----TDGAGRR 244
RHS_repeat: domain 2 of 16, from 325 to 365: score 23.5, E = 8.1e-06
*->YDanGrLtavtdpsgpvgqt.YrYDaagr..ltaltlttstdasGtt
Y a G L av+d sg+++ +++ YDa++ ++++a+ ++a+ +
gi|1579991 325 YTASGELRAVYDRSGTQV-RgFAYDAEHAgrMVAH-----HYAGRPE 365
<-*
gi|1579991 - -
RHS: domain 1 of 3, from 369 to 383: score 0.3, E = 24
*->rYdaWGnvleEevsq<-*
rYd+ G+v+e+++++
gi|1579991 369 RYDDTGRVTELVNPE 383
RHS_repeat: domain 3 of 16, from 370 to 406: score 14.7, E = 0.0026
*->YDanGrLtavtdpsgpvgq.t.YrYD.aagrltaltlttstdasGtt
YD++Gr+t+ +p+g++++++Y++++ +t++ +++ +
gi|1579991 370 YDDTGRVTE---LVNPEGLdYrFEYGqDRVTITDS-----LNRR--E 406
<-*
gi|1579991 - -
But2: domain 1 of 1, from 382 to 389: score -0.6, E = 8.2
*->PiGLtLrv<-*
P+GL +r+
gi|1579991 382 PEGLDYRF 389
RHS_repeat: domain 4 of 16, from 434 to 472: score 33.0, E = 1.7e-08
*->YDanGrLtavtdpsgpvgqtYrYD.aagrltaltlttstdasGtt<-
YD++GrL a+td++g+++ +Y+ a g +ta+ t ++G+t
gi|1579991 434 YDEAGRLKAQTDAAGRRT-EYSLHmASGAVTAV-----TGPDGRT 472
*
gi|1579991 - -
FAD_binding_4: domain 1 of 1, from 461 to 476: score 2.5, E = 3.8
CS EEEEEE TTS-EEEEE
*->glevVl.adGevvrls<-*
++++V+++dG++vr +
gi|1579991 461 AVTAVTgPDGRTVRYG 476
RHS_repeat: domain 5 of 16, from 474 to 493: score 7.3, E = 0.32
*->tYrYDaagrltaltlttstdasGtt<-*
+Y+Y++ +++t++ t+++G +
gi|1579991 474 RYGYNSQRQVTSV-----TYPDGLR 493
RHS_repeat: domain 6 of 16, from 498 to 537: score 20.7, E = 5e-05
*->YDanGrLtavtdpsgpvgqtYrYDaagr..ltaltlttstdasGtt<
YD+ GrL a t sg ++ +Y+YD+ + t + da G t
gi|1579991 498 YDEKGRLAAETSRSGETT-RYSYDDPASelPTGI-----QDATGST 537
-*
gi|1579991 - -
RHS_repeat: domain 7 of 16, from 542 to 579: score 12.3, E = 0.013
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
+++ G+L++ td sg ++ +Y+YD g+ +a+ + +G
gi|1579991 542 WSRYGQLLTFTDCSGYTT-RYEYDRYGQQIAV-----HREEGIS 579
Phospholip_A2_1: domain 1 of 1, from 545 to 570: score 1.4, E = 6.9
CS HHHHHCTTSS-TTTS--EEEEETTEE
*->YgeaeKitgCnPklttYsYscsngdi<-*
Yg++ +t+C ++t+Y Y+ + +i
gi|1579991 545 YGQLLTFTDCSGYTTRYEYDRYGQQI 570
Paramecium_SA: domain 1 of 1, from 548 to 557: score 1.2, E = 6.4
*->gtThaeCqay<-*
++T+++C++y
gi|1579991 548 LLTFTDCSGY 557
DUF820: domain 1 of 1, from 563 to 574: score 1.6, E = 6.3
*->vDpkyrrrrrerrvevyr<-*
+D++ ++++ v+r
gi|1579991 563 YDRY------GQQIAVHR 574
RHS_repeat: domain 8 of 16, from 584 to 621: score 30.0, E = 1.2e-07
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
Y+ +G+L++++d+ g+++ +Y+Y aag lta+ ++G +
gi|1579991 584 YNPRGQLVSQKDAQGRET-RYEYSAAGDLTAI-----VAPDGSR 621
Pectinesterase: domain 1 of 1, from 612 to 620: score -0.0, E = 7.6
*->nvVVAkDGS<-*
++VA DGS
gi|1579991 612 TAIVAPDGS 620
RHS: domain 2 of 3, from 625 to 639: score 1.8, E = 8
*->rYdaWGnvleEevsq<-*
+YdaWG++++ +
gi|1579991 625 QYDAWGKAVSTTQGG 639
RHS_repeat: domain 9 of 16, from 626 to 662: score 28.4, E = 3.3e-07
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
YDa G+ +++t ++g ++ +YDaagr+t l t+ +G
gi|1579991 626 YDAWGKAVSTT-QGGLTR-SMGYDAAGRITVL-----TNENGSQ 662
RHS_repeat: domain 10 of 16, from 667 to 703: score 17.4, E = 0.00044
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
YD +rLt+++ +g++ +Y+YD +g lt++ + +G +
gi|1579991 667 YDPVDRLTEQRGFDGRTQ-RYHYDLTGKLTQS------EDEGLV 703
RHS_repeat: domain 11 of 16, from 708 to 747: score 24.3, E = 4.7e-06
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltltts.tdasGtt<-
YDa +r+t t +++p+ ++YD+ g+lt+l s+t+ ++++
gi|1579991 708 YDASDRITHRTVNGDPAE-QWQYDEHGWLTTL----ShTSEGHRV 747
*
gi|1579991 - -
RHS_repeat: domain 12 of 16, from 753 to 799: score 8.2, E = 0.18
*->YDanGrLtavt.dpsgpvgq.t.YrYDaagr.....ltaltlttstd
YD+ GrLt+ +++ +p++ + +++ + ++++l ++ +
gi|1579991 753 YDDKGRLTGERqTVENPETGeMlWEHETGHAyseqgLATR-----QE 794
asGtt<-*
++G
gi|1579991 795 PDGLP 799
PQQ: domain 1 of 1, from 768 to 790: score 6.6, E = 0.46
CS ETTTTSEEEEEESSSGGGS GEE
*->DakTGkvlWkfktggpvds.pvt<-*
+ +TG++lW+++tg++ + +
gi|1579991 768 NPETGEMLWEHETGHAYSEqGLA 790
PQQ_N: domain 1 of 1, from 799 to 810: score 4.3, E = 3.2
CS STT-B-STTSST
*->apgdWpaYGgdy<-*
+p +W++YG +y
gi|1579991 799 PPVEWLTYGSGY 810
DUF1794: domain 1 of 1, from 814 to 832: score 1.7, E = 4
*->maavgqgpLqpHlsArLkRv<-*
m g+ pL ++++ rL+R
gi|1579991 814 MKLGGT-PLVEYMRDRLHRE 832
CmcI: domain 1 of 1, from 870 to 880: score 0.9, E = 3.5
*->WnpnGYLkRlr<-*
Wn nG L+R+
gi|1579991 870 WNDNGQLIRIS 880
RHS_repeat: domain 13 of 16, from 870 to 904: score 24.8, E = 3.4e-06
*->YDanGrLtavtdpsgpvgq.tYrYDaagrltaltlttstdasGtt<-
+++nG+L+ sgp+ ++YrY ++grlt + ++++ +
gi|1579991 870 WNDNGQLIR---ISGPQESrEYRYSDTGRLTGV-----HTTA--A 904
*
gi|1579991 - -
UPF0257: domain 1 of 1, from 872 to 894: score 0.7, E = 2.3
*->DnGFvvkAssKemkvEYRYDdeG<-*
DnG ++ s+ + EYRY d G
gi|1579991 872 DNGQLIRISGPQESREYRYSDTG 894
MGS: domain 1 of 1, from 906 to 914: score 3.0, E = 5.4
CS HTTTCCECS
*->enidIPgpT<-*
++idIP++T
gi|1579991 906 LDIDIPYAT 914
DUF300: domain 1 of 1, from 945 to 965: score 1.4, E = 2.5
*->lYAFpykpYagetvsggakrsv<-*
+Y+++y +Y++ ++ +++++++
gi|1579991 945 HYVYRYDEYGRLAE-KTDRIPE 965
RHS_repeat: domain 14 of 16, from 950 to 996: score 8.6, E = 0.14
*->YDanGrLtavtd.......psgpvgq.tYrYDaagrltaltlttstd
YD+ GrL ++td+ +++ + +++++Y+YD+ +rl+ + t
gi|1579991 950 YDEYGRLAEKTDripegviRMHDERThHYHYDSQHRLVFH-----TR 991
asGtt<-*
++ +
gi|1579991 992 IQHGE 996
RHS_repeat: domain 15 of 16, from 997 to 1021: score 3.1, E = 5.2
*->pvgq.tYrYDaagrltaltlttstdasGtt<-*
p+++++Y YD++gr+t + + ++
gi|1579991 997 PQVEsRYLYDPLGRRTGK-----RVWRRER 1021
zf-XS: domain 1 of 1, from 1079 to 1086: score 2.8, E = 2
*->KAsHrALa<-*
KA+Hr La
gi|1579991 1079 KARHRSLA 1086
DMAP_binding: domain 1 of 1, from 1093 to 1120: score 4.4, E = 1.8
*->eaasLPaeVreRLaeLdldLsegdiTeK<-*
+ +LPae+ L L+++L +g+ +e+
gi|1579991 1093 TGVTLPAELAVMLGRLERELRQGSVSEE 1120
UPF0175: domain 1 of 1, from 1096 to 1113: score 1.8, E = 9.7
*->kvPerlrellgekRlekElr<-*
+P l + lg+ le+Elr
gi|1579991 1096 TLPAELAVMLGR--LERELR 1113
MEF2_binding: domain 1 of 1, from 1114 to 1144: score 3.4, E = 3.3
*->KGsisEEtKqKLKsviLsa.qsAAtvkKesL<-*
+Gs+sEE +q L + L a+q AA+ e +
gi|1579991 1114 QGSVSEESQQWLAQCGLTAeQMAAQLEAEYI 1144
E_Pc_C: domain 1 of 1, from 1129 to 1134: score -1.3, E = 8.9
*->afTaEQ<-*
++TaEQ
gi|1579991 1129 GLTAEQ 1134
RHS: domain 3 of 3, from 1149 to 1189: score 86.4, E = 8.2e-27
*->vyYYHtDqiGtPLeLtdseGeivWqArYdaWGnvleEevsq<-*
+++YH+D++G+PL+L+++eGe++Wq++Yd+WGn+l E ++q
gi|1579991 1149 LHLYHCDHRGLPLALISPEGETAWQGEYDEWGNLLGETSAQ 1189
Ring_hydroxyl_A: domain 1 of 1, from 1168 to 1188: score 0.5, E = 5.7
*->sEtaaRGfYrhWqrmmssssW<-*
+Eta G Y +W ++++ s
gi|1579991 1168 GETAWQGEYDEWGNLLGETSA 1188
RHS_repeat: domain 16 of 16, from 1175 to 1192: score 2.5, E = 7.6
*->rYDaagrltaltlttstdasGtt<-*
+YD++g+l t+a++
gi|1579991 1175 EYDEWGNLLGE-----TSAQHLQ 1192
SH3_3: domain 1 of 1, from 1269 to 1277: score 2.7, E = 6.5
*->ssLNVRsgP<-*
+sLNVR+ P
gi|1579991 1269 GSLNVREFP 1277
gp12-short_mid: domain 1 of 1, from 1278 to 1291: score 4.2, E = 0.96
CS -HHHHTTSB--SSS
*->TGeTLNGRGaTtSM<-*
TG T G G+ tSM
gi|1579991 1278 TGFTVGGHGSPTSM 1291
NusG: domain 1 of 1, from 1282 to 1294: score 1.8, E = 8.6
CS SS-...----EE--HH
*->vGgggtgskPtpisde<-*
vGg+g Pt +sd+
gi|1579991 1282 VGGHG---SPTSMSDD 1294
DUF485: domain 1 of 1, from 1311 to 1319: score 3.8, E = 2.9
*->iqanPkFqe<-*
i+anPk++e
gi|1579991 1311 IRANPKYHE 1319
ANT: domain 1 of 1, from 1330 to 1348: score 2.1, E = 5.9
*->TgKGqqylinkLlkeggla<-*
TgKG +++kL++e
gi|1579991 1330 TGKGKNSFAQKLANELDAT 1348
Ribosomal_S7: domain 1 of 1, from 1331 to 1345: score 3.9, E = 1.4
CS SSH...HHHHHHHHH
*->eKskksmaekLAnEl<-*
+K k s+a+kLAnEl
gi|1579991 1331 GKGKNSFAQKLANEL 1345
UPF0278: domain 1 of 1, from 1341 to 1354: score 4.0, E = 1.3
*->LAkELDAaVVasDe<-*
LA ELDA+V+a De
gi|1579991 1341 LANELDATVIAPDE 1354
AMNp_N: domain 1 of 1, from 1380 to 1392: score 1.9, E = 5
*->NGtyepapGeplP<-*
NG +e p+e +P
gi|1579991 1380 NGVFELVPDEKQP 1392
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