hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            15804136.fa
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Query sequence: gi|15804136|ref|NP_290175.1|
Accession:      [none]
Description:    hypothetical protein Z5017 [Escherichia coli O157:H7 EDL933]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
RHS             RHS protein                              84.9    2.5e-26   1
CHD5            CHD5-like protein                         2.8        1.2   1
MRP-S28         Mitochondrial ribosomal subunit prote     0.9        5.8   1
Ricin_B_lectin  Ricin-type beta-trefoil lectin domain     0.1          8   1
APC10           Anaphase-promoting complex, subunit 1     1.1          8   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
RHS               1/1      46    86 ..     1    41 []    84.9  2.5e-26
MRP-S28           1/1      84   104 ..    48    68 ..     0.9      5.8
APC10             1/1     177   194 ..   204   222 .]     1.1        8
Ricin_B_lectin    1/1     206   226 ..    20    42 ..     0.1        8
CHD5              1/1     212   222 ..   180   190 .]     2.8      1.2

Alignments of top-scoring domains:
RHS: domain 1 of 1, from 46 to 86: score 84.9, E = 2.5e-26
                   *->vyYYHtDqiGtPLeLtdseGeivWqArYdaWGnvleEevsq<-*
                      +++YH+D++G+PL+L+++eG + W+A+Yd+WGn+l+Ee+++
  gi|1580413    46    IHLYHCDHRGLPLALISAEGATEWCAEYDEWGNLLNEENPH    86

MRP-S28: domain 1 of 1, from 84 to 104: score 0.9, E = 5.8
                   *->dekqrhKLklLAGpRYnpeTD<-*
                      +++q++ L++L G+ Y++e +
  gi|1580413    84    NPHQLQQLIRLPGQQYDEESG    104

APC10: domain 1 of 1, from 177 to 194: score 1.1, E = 8
                CS    ---....XXXXXXXXXXXX
                   *->fhgNHATptsvdfqtyatl<-*
                      ++g H Tpts++ +t++ +
  gi|1580413   177    IGG-HGTPTSIESATRSIM    194

Ricin_B_lectin: domain 1 of 1, from 206 to 226: score 0.1, E = 8
                CS    .STSTTTEEEEEEE--SS-GG.G
                   *->ggntadggpvglypChggggndQ<-*
                      +gn +dg +v+l++C++ g   Q
  gi|1580413   206    DGNYKDGMTVWLFSCNT-GKG-Q    226

CHD5: domain 1 of 1, from 212 to 222: score 2.8, E = 1.2
                   *->SltiWlwAcnk<-*
                      + t+Wl+ cn+
  gi|1580413   212    GMTVWLFSCNT    222

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