hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 158334417.fa
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Query sequence: gi|158334417|ref|YP_001515589.1|
Accession: [none]
Description: FG-GAP repeat- calx-beta domain-containing protein [Acaryochloris marina MBIC11017]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FG-GAP FG-GAP repeat 533.6 2.4e-157 21
Calx-beta Calx-beta domain 30.8 1.2e-07 2
VWD von Willebrand factor type D domain 14.8 0.0004 4
DHFR_2 R67 dihydrofolate reductase 7.5 0.096 3
PAF-AH_p_II Platelet-activating factor acetylhydr 5.3 0.23 2
P2_Phage_GpR P2 phage tail completion protein R (G 4.8 0.44 2
HemolysinCabind Hemolysin-type calcium-binding repeat 6.9 0.62 2
ChitinaseA_N Chitinase A, N-terminal domain 4.8 0.69 1
tRNA_int_endo_N tRNA intron endonuclease, N-terminal 6.0 0.76 1
DNA_pol3_beta_2 DNA polymerase III beta subunit, cent 3.8 0.99 1
SpoIIE Stage II sporulation protein E (SpoII 3.2 1.1 2
Bt_P21 Bacillus thuringiensis P21 molecular 0.8 2.1 1
RB_A Retinoblastoma-associated protein A d 2.2 2.3 1
Chlorovi_GP_rpt Chlorovirus glycoprotein repeat 4.1 2.4 6
DUF633 Family of unknown function (DUF633) 2.6 2.6 1
DUF955 Domain of unknown function (DUF955) 2.9 2.6 1
Herpes_V23 Herpesvirus VP23 like capsid protein 1.7 3.2 2
DUF1565 Protein of unknown function (DUF1565) 0.3 4 1
RFX1_trans_act RFX1 transcription activation region 1.5 4.3 1
DUF2599 Protein of unknown function (DUF2599) 0.9 4.5 1
DAD DAD family 0.9 4.6 1
DUF2388 Protein of unknown function (DUF2388) 2.1 5 1
Cuticle_1 Crustacean cuticle protein repeat 2.0 5.6 1
DUF981 Protein of unknown function (DUF981) 0.6 6.1 1
Cu_amine_oxidN1 Copper amine oxidase N-terminal domai 1.9 7 1
SapC SapC 0.4 7.1 1
ACP_syn_III 3-Oxoacyl-[acyl-carrier-protein (ACP) 2.2 8.2 1
AlaDh_PNT_N Alanine dehydrogenase/PNT, N-terminal 0.2 8.5 1
Glyco_hydro_15 Glycosyl hydrolases family 15 -0.8 8.9 1
RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 -0.3 9.2 1
Sucrose_synth Sucrose synthase -2.0 9.4 1
GTF2I GTF2I-like repeat 0.5 10 1
ApbA Ketopantoate reductase PanE/ApbA 0.5 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RB_A 1/1 7 19 .. 1 13 [. 2.2 2.3
tRNA_int_endo_N 1/1 33 49 .. 1 17 [. 6.0 0.76
DUF955 1/1 159 171 .. 110 122 .] 2.9 2.6
DUF981 1/1 179 193 .. 226 242 .] 0.6 6.1
Herpes_V23 1/2 190 203 .. 301 314 .] 1.4 3.7
FG-GAP 1/21 203 233 .. 1 36 [] 25.2 2.3e-06
Bt_P21 1/1 212 227 .. 167 182 .] 0.8 2.1
DAD 1/1 220 227 .. 127 134 .] 0.9 4.6
ACP_syn_III 1/1 223 239 .. 41 58 .. 2.2 8.2
FG-GAP 2/21 252 282 .. 1 36 [] 27.4 5.3e-07
VWD 1/4 259 275 .. 151 167 .] 5.1 0.32
Chlorovi_GP_rpt 1/6 281 288 .. 1 8 [. 0.6 30
DUF2388 1/1 292 350 .. 1 46 [. 2.1 5
FG-GAP 3/21 301 331 .. 1 36 [] 21.5 2.7e-05
SapC 1/1 310 320 .. 1 11 [. 0.4 7.1
Chlorovi_GP_rpt 2/6 330 337 .. 1 8 [. 1.7 14
FG-GAP 4/21 350 380 .. 1 36 [] 24.7 3.2e-06
VWD 2/4 357 373 .. 151 167 .] 3.6 0.94
RFX1_trans_act 1/1 390 404 .. 1 15 [. 1.5 4.3
FG-GAP 5/21 399 429 .. 1 36 [] 25.5 1.9e-06
VWD 3/4 406 422 .. 151 167 .] 3.6 0.94
FG-GAP 6/21 448 478 .. 1 36 [] 28.3 2.9e-07
FG-GAP 7/21 497 526 .. 1 36 [] 24.7 3.1e-06
P2_Phage_GpR 1/2 501 510 .. 51 60 .. 2.4 2.3
HemolysinCabind 1/2 507 523 .. 1 17 [. 0.7 47
GTF2I 1/1 555 560 .. 71 76 .] 0.5 10
Calx-beta 1/2 575 631 .. 58 109 .] 16.9 0.0007
AlaDh_PNT_N 1/1 659 666 .. 138 145 .] 0.2 8.5
FG-GAP 8/21 670 700 .. 1 36 [] 29.2 1.5e-07
Sucrose_synth 1/1 686 697 .. 403 414 .. -2.0 9.4
PAF-AH_p_II 1/2 706 722 .. 1 17 [. 3.9 0.54
ApbA 1/1 718 730 .. 157 170 .] 0.5 10
FG-GAP 9/21 719 749 .. 1 36 [] 27.8 4e-07
FG-GAP 10/21 768 799 .. 1 36 [] 27.1 6.2e-07
DUF2599 1/1 808 820 .. 105 117 .] 0.9 4.5
FG-GAP 11/21 818 848 .. 1 36 [] 24.6 3.4e-06
P2_Phage_GpR 2/2 822 838 .. 51 65 .. 2.4 2.4
DNA_pol3_beta_2 1/1 840 870 .. 85 115 .. 3.8 0.99
SpoIIE 1/2 841 854 .. 1 14 [. 2.0 2.5
FG-GAP 12/21 867 897 .. 1 36 [] 27.2 5.7e-07
DHFR_2 1/3 888 918 .. 1 31 [. 2.2 3.6
SpoIIE 2/2 890 903 .. 1 14 [. 1.2 4.3
FG-GAP 13/21 915 946 .. 1 36 [] 22.5 1.4e-05
FG-GAP 14/21 965 995 .. 1 36 [] 23.2 8.7e-06
DUF1565 1/1 974 999 .. 94 119 .. 0.3 4
ChitinaseA_N 1/1 988 1030 .. 53 89 .. 4.8 0.69
Calx-beta 2/2 1044 1100 .. 58 109 .] 13.9 0.0046
FG-GAP 15/21 1139 1169 .. 1 36 [] 24.7 3.2e-06
Cu_amine_oxidN1 1/1 1151 1172 .. 23 44 .. 1.9 7
DUF633 1/1 1157 1173 .. 41 57 .. 2.6 2.6
Chlorovi_GP_rpt 3/6 1168 1175 .. 1 8 [. 0.6 30
PAF-AH_p_II 2/2 1175 1192 .. 1 18 [. 1.4 2.8
FG-GAP 16/21 1188 1218 .. 1 36 [] 25.5 1.8e-06
FG-GAP 17/21 1237 1267 .. 1 36 [] 29.7 1.1e-07
Glyco_hydro_15 1/1 1250 1259 .. 486 495 .] -0.8 8.9
DHFR_2 2/3 1258 1288 .. 1 31 [. 4.6 0.66
Chlorovi_GP_rpt 4/6 1266 1273 .. 1 8 [. 0.3 38
Herpes_V23 2/2 1275 1286 .. 303 314 .] 0.2 8
FG-GAP 18/21 1286 1316 .. 1 36 [] 16.5 0.00082
HemolysinCabind 2/2 1296 1313 .. 1 18 [] 6.2 1.1
DHFR_2 3/3 1307 1335 .. 1 29 [. 0.7 10
Chlorovi_GP_rpt 5/6 1315 1322 .. 1 8 [. 0.6 30
FG-GAP 19/21 1335 1365 .. 1 36 [] 19.3 0.00012
FG-GAP 20/21 1384 1414 .. 1 36 [] 26.9 7.4e-07
RNA_pol_Rpb1_3 1/1 1386 1393 .. 239 246 .] -0.3 9.2
VWD 4/4 1391 1407 .. 151 167 .] 2.6 1.9
Chlorovi_GP_rpt 6/6 1413 1420 .. 1 8 [. 0.3 38
FG-GAP 21/21 1433 1463 .. 1 36 [] 32.2 2.1e-08
Cuticle_1 1/1 1494 1502 .. 36 44 .] 2.0 5.6
Alignments of top-scoring domains:
RB_A: domain 1 of 1, from 7 to 19: score 2.2, E = 2.3
CS --------HHHHH
*->tPVrtAmntvkrL<-*
tP ++A +t++rL
gi|1583344 7 TPLSSACQTLQRL 19
tRNA_int_endo_N: domain 1 of 1, from 33 to 49: score 6.0, E = 0.76
CS EEEEEETTEEEES-HHH
*->mkgvLsgdrVlvwdeea<-*
++gvL g+rV+v d+e+
gi|1583344 33 IDGVLPGTRVVVLDPER 49
DUF955: domain 1 of 1, from 159 to 171: score 2.9, E = 2.6
*->fgvseealahrls<-*
+g+s ++l hrls
gi|1583344 159 YGLSPIFLSHRLS 171
DUF981: domain 1 of 1, from 179 to 193: score 0.6, E = 6.1
*->iGieAvfgHlnPasgfg<-*
+ ++++++Hl a +f
gi|1583344 179 TTLNTYPAHL--AADFS 193
Herpes_V23: domain 1 of 2, from 190 to 203: score 1.4, E = 3.7
*->ctysgetlvaTCwl<-*
+++s++t+ aT++
gi|1583344 190 ADFSAQTTFATGDA 203
FG-GAP: domain 1 of 21, from 203 to 233: score 25.2, E = 2.3e-06
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+ssv++gD+nGD ++Dlv+ + +++v++l
gi|1583344 203 APSSVSVGDFNGDSHADLVT-------VNfLnNNVSVL 233
Bt_P21: domain 1 of 1, from 212 to 227: score 0.8, E = 2.1
*->FsGDiHFnmvtmtyLt<-*
F GD H +vt+ +L
gi|1583344 212 FNGDSHADLVTVNFLN 227
DAD: domain 1 of 1, from 220 to 227: score 0.9, E = 4.6
*->LVvvNFlG<-*
LV vNFl+
gi|1583344 220 LVTVNFLN 227
ACP_syn_III: domain 1 of 1, from 223 to 239: score 2.2, E = 8.2
CS S-TT-.TTTTTTB-EEEE
*->lDwtDpRsTcvLFGDGAG<-*
+++ + + +vLFGDG G
gi|1583344 223 VNFLN-NNVSVLFGDGSG 239
FG-GAP: domain 2 of 21, from 252 to 282: score 27.4, E = 5.3e-07
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
s+++gD+nGDG++Dlv+ +++++++++++
gi|1583344 252 SSLSASVGDFNGDGHADLVT-------ANgSgNNISVF 282
VWD: domain 1 of 4, from 259 to 275: score 5.1, E = 0.32
*->GnfdgepedDfrtpdGs<-*
G f+g+ + D++t++Gs
gi|1583344 259 GDFNGDGHADLVTANGS 275
Chlorovi_GP_rpt: domain 1 of 6, from 281 to 288: score 0.6, E = 30
*->yFiGNGsf<-*
+F+G+Gs+
gi|1583344 281 VFLGDGSG 288
DUF2388: domain 1 of 1, from 292 to 350: score 2.1, E = 5
*->llaallLllapa.............asAsAfdvttdavvralasSga
+ ++ ++ p++ + ++ +++++ A A +++ ++ v +++ Sg+
gi|1583344 292 SPTTFAAGSIPIsvtvgdfngdshaDLAVANTISHNISVFLGNGSGG 338
aTSsttssfrDd<-*
++S+tt+++ D+
gi|1583344 339 FSSQTTFAVGDR 350
FG-GAP: domain 3 of 21, from 301 to 331: score 21.5, E = 2.7e-05
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+ sv++gD+nGD ++Dl+v a+ ++++ ++++
gi|1583344 301 IPISVTVGDFNGDSHADLAV----ANTIShN--ISVF 331
SapC: domain 1 of 1, from 310 to 320: score 0.4, E = 7.1
*->LNnvdHadLav<-*
+N + HadLav
gi|1583344 310 FNGDSHADLAV 320
Chlorovi_GP_rpt: domain 2 of 6, from 330 to 337: score 1.7, E = 14
*->yFiGNGsf<-*
+F+GNGs+
gi|1583344 330 VFLGNGSG 337
FG-GAP: domain 4 of 21, from 350 to 380: score 24.7, E = 3.2e-06
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+ssv++gD+nGD ++Dlv+ ++ +++v++l
gi|1583344 350 RPSSVTVGDFNGDSHADLVT-------TNgTsDNVSVL 380
VWD: domain 2 of 4, from 357 to 373: score 3.6, E = 0.94
*->GnfdgepedDfrtpdGs<-*
G f+g+++ D++t +G+
gi|1583344 357 GDFNGDSHADLVTTNGT 373
RFX1_trans_act: domain 1 of 1, from 390 to 404: score 1.5, E = 4.3
*->mqsSeTgadstatVa<-*
+q+ ++ds+++V+
gi|1583344 390 SQTTFAAGDSPSSVT 404
FG-GAP: domain 5 of 21, from 399 to 429: score 25.5, E = 1.9e-06
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+ssv++gD+nGD ++Dlv+ ++ +++v++l
gi|1583344 399 SPSSVTVGDFNGDSHADLVT-------TNgTsDNVSVL 429
VWD: domain 3 of 4, from 406 to 422: score 3.6, E = 0.94
*->GnfdgepedDfrtpdGs<-*
G f+g+++ D++t +G+
gi|1583344 406 GDFNGDSHADLVTTNGT 422
FG-GAP: domain 6 of 21, from 448 to 478: score 28.3, E = 2.9e-07
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+++s+ +gD+nGDG++Dlv ++ ++++v++l
gi|1583344 448 TPRSIKVGDFNGDGHADLVM-------ANlNsNNVSVL 478
FG-GAP: domain 7 of 21, from 497 to 526: score 24.7, E = 3.1e-06
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+++sv ++D+nGD +Dlv+ ++++++v++l
gi|1583344 497 NPTSVIVTDFNGDSQADLVT-------ANdGNNVSVL 526
P2_Phage_GpR: domain 1 of 2, from 501 to 510: score 2.4, E = 2.3
*->vIvtDFaGdp<-*
vIvtDF+Gd+
gi|1583344 501 VIVTDFNGDS 510
HemolysinCabind: domain 1 of 2, from 507 to 523: score 0.7, E = 47
CS E--SSS-EEEEESSCGE
*->yGGaGnDtLyGgaGnDt<-*
+G+ D + ++Gn++
gi|1583344 507 NGDSQADLVTANDGNNV 523
GTF2I: domain 1 of 1, from 555 to 560: score 0.5, E = 10
*->FvIKRP<-*
F+I+RP
gi|1583344 555 FTITRP 560
Calx-beta: domain 1 of 2, from 575 to 631: score 16.9, E = 0.0007
*->GTAtaGPgsDY.........eptegtiLtFgPgedtekcinvtiiDD
G+At G sD+++ +++++ ++t+gt + F +ge t k+i + ++ D
gi|1583344 575 GSATNG--SDFnniggtsgaTATTGT-INFAAGE-TSKTITLDVLGD 617
dvyEgdEnFfvrLs<-*
+E E+ v Ls
gi|1583344 618 TSFETLETIEVSLS 631
AlaDh_PNT_N: domain 1 of 1, from 659 to 666: score 0.2, E = 8.5
CS THHHHHHH
*->LssMseiA<-*
+s++s+ A
gi|1583344 659 FSPQSNFA 666
FG-GAP: domain 8 of 21, from 670 to 700: score 29.2, E = 1.5e-07
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
++++v++gD+nGD ++Dlv+ g+ ++g++++l
gi|1583344 670 GPAAVSVGDFNGDSHADLVT-------GNySnGNISVL 700
Sucrose_synth: domain 1 of 1, from 686 to 697: score -2.0, E = 9.4
*->DliiGnYsdGnl<-*
Dl+ GnYs+Gn+
gi|1583344 686 DLVTGNYSNGNI 697
PAF-AH_p_II: domain 1 of 2, from 706 to 722: score 3.9, E = 0.54
*->lgssgqvkiPkgnGpyp<-*
+g+s+q+++ +g+Gpy+
gi|1583344 706 GGFSSQTTFAAGTGPYS 722
ApbA: domain 1 of 1, from 718 to 730: score 0.5, E = 10
CS -S.---EEEEESSG
*->tGvpGrtviGelpg<-*
tG p ++++G+++g
gi|1583344 718 TG-PYSITVGDFNG 730
FG-GAP: domain 9 of 21, from 719 to 749: score 27.8, E = 4e-07
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+++s+++gD+nGD +Dl++ ++ ++gsv++l
gi|1583344 719 GPYSITVGDFNGDSQADLAT-------ANySnGSVSVL 749
FG-GAP: domain 10 of 21, from 768 to 799: score 27.1, E = 6.2e-07
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d..gsvyll<-*
+ +s+a+gD+nGD ++Dlvv ++++++g v++l
gi|1583344 768 NSRSIAVGDFNGDSHADLVV-------ANdNsnGDVSVL 799
DUF2599: domain 1 of 1, from 808 to 820: score 0.9, E = 4.5
*->sdeemvAaGCNPg<-*
s++ ++AaG NP+
gi|1583344 808 SNQTTFAAGSNPT 820
FG-GAP: domain 11 of 21, from 818 to 848: score 24.6, E = 3.4e-06
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+++sv ++D+nGD +Dlvv +++++++v++l
gi|1583344 818 NPTSVIVTDFNGDSQADLVV-------ANsSdDNVSVL 848
P2_Phage_GpR: domain 2 of 2, from 822 to 838: score 2.4, E = 2.4
*->vIvtDFaGdp..Dlifv<-*
vIvtDF+Gd++ Dl+++
gi|1583344 822 VIVTDFNGDSqaDLVVA 838
DNA_pol3_beta_2: domain 1 of 1, from 840 to 870: score 3.8, E = 0.99
CS .SSSEEEEEEE......SSEEEEEETTEEEE
*->rneelvdiqigGgsvgkegqirfevgnvift<-*
+++++v++ +g gs+g ++qi+f +gn ft
gi|1583344 840 SSDDNVSVLLGDGSGGFSNQITFATGNNPFT 870
SpoIIE: domain 1 of 2, from 841 to 854: score 2.0, E = 2.5
*->pdgrvalviGDVmG<-*
+d++v +++GD++G
gi|1583344 841 SDDNVSVLLGDGSG 854
FG-GAP: domain 12 of 21, from 867 to 897: score 27.2, E = 5.7e-07
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
++ +vaagD+nGD +Dlvv +++++++v++l
gi|1583344 867 NPFTVAAGDFNGDSQADLVV-------ANeSdNNVSVL 897
DHFR_2: domain 1 of 3, from 888 to 918: score 2.2, E = 3.6
CS XXXXXXXXXXXXX XXXXX--S-SS-TT-EEE
*->meessnEvsapvA.GrFalPsnAtFglGDRvR<-*
+es n vs +G + s+AtF+ G R R
gi|1583344 888 -NESDNNVSVLLGdGSGGFSSQATFATGNRPR 918
SpoIIE: domain 2 of 2, from 890 to 903: score 1.2, E = 4.3
*->pdgrvalviGDVmG<-*
+d++v +++GD++G
gi|1583344 890 SDNNVSVLLGDGSG 903
FG-GAP: domain 13 of 21, from 915 to 946: score 22.5, E = 1.4e-05
CS CCSCEEEC -TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaag.DlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+ ++++D+nGDG +Dlv+ +++++++v++l
gi|1583344 915 NRPRFVVVeDFNGDGQADLVA-------AStNnNNVSVL 946
FG-GAP: domain 14 of 21, from 965 to 995: score 23.2, E = 8.7e-06
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+ s++++D+nGD +Dlv+ + ++++v++l
gi|1583344 965 LAISRSVADFNGDSQADLVT-------TSfGgNNVSVL 995
DUF1565: domain 1 of 1, from 974 to 999: score 0.3, E = 4
*->GggEYqSqDlsRSFgvqNvTIvlnns<-*
++g+ q++ ++ SFg++Nv ++lnns
gi|1583344 974 FNGDSQADLVTTSFGGNNVSVLLNNS 999
ChitinaseA_N: domain 1 of 1, from 988 to 1030: score 4.8, E = 0.69
*->gGdtakvlFDgk...........qVwkegGlpaggsaktatfkvtkG
gG+++ vl+++ + +++ + + +q+ + G + g ++t tf+vt +
gi|1583344 988 GGNNVSVLLNNSeidhsisvdatQMIE--G-DSG--SQTLTFTVTRS 1029
G<-*
G
gi|1583344 1030 G 1030
Calx-beta: domain 2 of 2, from 1044 to 1100: score 13.9, E = 0.0046
*->GTAtaGPgsDY.........eptegtiLtFgPgedtekcinvtiiDD
G+At G sD+++ +++++ ++t+gt + F +ge t k+i + ++ D
gi|1583344 1044 GSATNG--SDFnniggtsgaTATTGT-INFAAGE-TSKTITLDVLGD 1086
dvyEgdEnFfvrLs<-*
+E E+ v Ls
gi|1583344 1087 TDFETFETIEVTLS 1100
FG-GAP: domain 15 of 21, from 1139 to 1169: score 24.7, E = 3.2e-06
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+ sva+gD+nGD +Dlv+ ++ ++++++++
gi|1583344 1139 SPFSVAVGDFNGDNQADLVT-------ANyNsDNISVF 1169
Cu_amine_oxidN1: domain 1 of 1, from 1151 to 1172: score 1.9, E = 7
CS ETTTTEEEEEETTEEEEE-TT-
*->ddqaktvtisKggtviklkvGk<-*
d+qa +vt++++++ i++++G+
gi|1583344 1151 DNQADLVTANYNSDNISVFLGD 1172
DUF633: domain 1 of 1, from 1157 to 1173: score 2.6, E = 2.6
*->VkksgLterIdVRlgDG<-*
V+++ ++++I+V+lgDG
gi|1583344 1157 VTANYNSDNISVFLGDG 1173
Chlorovi_GP_rpt: domain 3 of 6, from 1168 to 1175: score 0.6, E = 30
*->yFiGNGsf<-*
+F+G+Gs+
gi|1583344 1168 VFLGDGSG 1175
PAF-AH_p_II: domain 2 of 2, from 1175 to 1192: score 1.4, E = 2.8
*->lgssgqvkiPkgnGpypV<-*
+g+s q+++ ++ Gpy V
gi|1583344 1175 GGFSAQTTFAAVDGPYFV 1192
FG-GAP: domain 16 of 21, from 1188 to 1218: score 25.5, E = 1.8e-06
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+++ v+++D+nGD ++Dlv+ ++ ++++v++l
gi|1583344 1188 GPYFVTVADFNGDSHADLVT-------ANlGsSNVSIL 1218
FG-GAP: domain 17 of 21, from 1237 to 1267: score 29.7, E = 1.1e-07
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
f+ssv+++D+nGD ++Dlv+ ++++++ v++l
gi|1583344 1237 FPSSVTVADFNGDSHADLVT-------ANqGsNDVSVL 1267
Glyco_hydro_15: domain 1 of 1, from 1250 to 1259: score -0.8, E = 8.9
CS HHHHHHHHHH
*->ShaaLltaar<-*
Sha L+ta++
gi|1583344 1250 SHADLVTANQ 1259
DHFR_2: domain 2 of 3, from 1258 to 1288: score 4.6, E = 0.66
CS XXXXXXXXXXXXX XXXXX--S-SS-TT-EEE
*->meessnEvsapvA.GrFalPsnAtFglGDRvR<-*
+++sn+vs +G + s+ tF+ GDR R
gi|1583344 1258 -NQGSNDVSVLLGnGSGGFSSQTTFATGDRPR 1288
Chlorovi_GP_rpt: domain 4 of 6, from 1266 to 1273: score 0.3, E = 38
*->yFiGNGsf<-*
+++GNGs+
gi|1583344 1266 VLLGNGSG 1273
Herpes_V23: domain 2 of 2, from 1275 to 1286: score 0.2, E = 8
*->ysgetlvaTCwl<-*
+s++t+ aT+++
gi|1583344 1275 FSSQTTFATGDR 1286
FG-GAP: domain 18 of 21, from 1286 to 1316: score 16.5, E = 0.00082
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
++s+a +D+nGD +D+++ +++++++++++
gi|1583344 1286 RPRSIAMADFNGDSQADFIT-------ANqGsDNISVF 1316
HemolysinCabind: domain 2 of 2, from 1296 to 1313: score 6.2, E = 1.1
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+ D ++ ++G D +
gi|1583344 1296 NGDSQADFITANQGSDNI 1313
DHFR_2: domain 3 of 3, from 1307 to 1335: score 0.7, E = 10
CS XXXXXXXXXXXXX XXXXX--S-SS-TT-E
*->meessnEvsapvA.GrFalPsnAtFglGDR<-*
+++s+ +s +G + s+ tF+ GDR
gi|1583344 1307 -NQGSDNISVFLGdGSGGFSSQTTFAAGDR 1335
Chlorovi_GP_rpt: domain 5 of 6, from 1315 to 1322: score 0.6, E = 30
*->yFiGNGsf<-*
+F+G+Gs+
gi|1583344 1315 VFLGDGSG 1322
FG-GAP: domain 19 of 21, from 1335 to 1365: score 19.3, E = 0.00012
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+++va+gD+n D Dlv+ ++ ++++v++l
gi|1583344 1335 RPYTVAVGDFNSDSQVDLVT-------ANaGdDNVSIL 1365
FG-GAP: domain 20 of 21, from 1384 to 1414: score 26.9, E = 7.4e-07
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+ sv++gD+nGDG +Dlv+ ad+++++ v++l
gi|1583344 1384 RPFSVSIGDFNGDGQADLVT----ADNISnN--VSVL 1414
RNA_pol_Rpb1_3: domain 1 of 1, from 1386 to 1393: score -0.3, E = 9.2
CS BB--GGGC
*->FSiGigDi<-*
FS++igD
gi|1583344 1386 FSVSIGDF 1393
VWD: domain 4 of 4, from 1391 to 1407: score 2.6, E = 1.9
*->GnfdgepedDfrtpdGs<-*
G f+g+ + D++t+d+
gi|1583344 1391 GDFNGDGQADLVTADNI 1407
Chlorovi_GP_rpt: domain 6 of 6, from 1413 to 1420: score 0.3, E = 38
*->yFiGNGsf<-*
+++GNGs+
gi|1583344 1413 VLLGNGSG 1420
FG-GAP: domain 21 of 21, from 1433 to 1463: score 32.2, E = 2.1e-08
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
++ sv++gD+nGDG++++vv ++ +++s+++l
gi|1583344 1433 NPPSVTVGDFNGDGLDEIVV-------ANfSsNSLSVL 1463
Cuticle_1: domain 1 of 1, from 1494 to 1502: score 2.0, E = 5.6
*->tsdGkNvQl<-*
tsdG N++l
gi|1583344 1494 TSDGSNITL 1502
//