hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 158334852.fa
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Query sequence: gi|158334852|ref|YP_001516024.1|
Accession: [none]
Description: calx-beta domain-containing protein [Acaryochloris marina MBIC11017]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Calx-beta Calx-beta domain 138.9 1.6e-38 3
Prd1-P2 Bacteriophage Prd1, adsorption protei 8.2 0.0077 1
WD40 WD domain, G-beta repeat 8.2 0.054 1
DM13 Electron transfer DM13 9.0 0.062 1
DUF1775 Domain of unkown function (DUF1775) 4.7 0.44 1
DUF2355 Predicted coiled-coil protein (DUF235 3.6 0.57 1
Rossmann-like Rossmann-like domain 3.4 0.65 1
CopC Copper resistance protein CopC 3.6 1.3 2
DUF2394 Domain of unknown function (DUF2394) 4.2 1.9 1
DUF552 Protein of unknown function (DUF552) 4.4 1.9 1
UEV UEV domain 2.7 2.1 1
Lpp-LpqN Probable lipoprotein LpqN 1.9 2.3 1
fn3 Fibronectin type III domain 3.7 2.5 1
Adap_comp_sub Adaptor complexes medium subunit fami 1.8 2.7 1
DUF291 Domain of unknown function 4.2 2.8 1
Ivy Inhibitor of vertebrate lysozyme (Ivy 2.2 3.2 1
DUF1314 Protein of unknown function (DUF1314) 1.5 3.4 1
Reg_prop Two component regulator propeller 6.0 3.6 1
CBM_25 Carbohydrate binding domain (family 2 2.6 3.7 1
SGL SMP-30/Gluconolaconase/LRE-like regio 1.4 3.8 1
Pec_lyase_N Pectate lyase, N terminus 0.6 4.3 1
Polyoma_lg_T_C Polyomavirus large T antigen C-termin -0.7 4.3 1
DUF1979 Domain of unknown function (DUF1979) 1.6 4.5 1
OAD_gamma Oxaloacetate decarboxylase, gamma cha 2.3 5.1 1
eIF2A Eukaryotic translation initiation fac 1.6 5.3 1
Beta_propel Beta propeller domain -0.4 5.6 1
Silic_transp Silicon transporter -0.8 5.8 1
RyR RyR domain 1.9 7.8 1
PfkB pfkB family carbohydrate kinase 0.2 8.3 1
H_lectin H-type lectin domain 2.5 8.4 2
Tfb4 Transcription factor Tfb4 0.2 9 1
Cytochrom_D1 Cytochrome D1 heme domain -0.7 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UEV 1/1 46 60 .. 1 16 [. 2.7 2.1
DUF1314 1/1 62 70 .. 181 189 .] 1.5 3.4
RyR 1/1 106 118 .. 83 95 .] 1.9 7.8
Adap_comp_sub 1/1 211 232 .. 306 329 .] 1.8 2.7
fn3 1/1 212 231 .. 1 20 [. 3.7 2.5
DUF2355 1/1 236 260 .. 209 233 .] 3.6 0.57
CBM_25 1/1 251 267 .. 71 87 .] 2.6 3.7
H_lectin 1/2 272 289 .. 1 18 [. 2.3 9.7
DUF552 1/1 297 310 .. 1 14 [. 4.4 1.9
OAD_gamma 1/1 301 310 .. 76 85 .] 2.3 5.1
H_lectin 2/2 310 321 .. 44 56 .. 0.2 35
Silic_transp 1/1 321 333 .. 530 542 .] -0.8 5.8
Prd1-P2 1/1 371 404 .. 528 560 .] 8.2 0.0077
Calx-beta 1/3 455 473 .. 25 45 .. 1.1 14
DUF1775 1/1 457 491 .. 1 35 [. 4.7 0.44
Calx-beta 2/3 508 543 .. 72 109 .] 24.6 5.7e-06
CopC 1/2 508 516 .. 139 147 .] 3.1 1.8
CopC 2/2 533 541 .. 139 147 .] 0.5 10
Calx-beta 3/3 556 655 .. 1 109 [] 113.2 8.9e-31
PfkB 1/1 581 602 .. 306 326 .] 0.2 8.3
Polyoma_lg_T_C 1/1 592 637 .. 380 425 .] -0.7 4.3
DUF291 1/1 622 636 .. 77 92 .] 4.2 2.8
SGL 1/1 687 708 .. 156 177 .. 1.4 3.8
eIF2A 1/1 694 706 .. 154 166 .. 1.6 5.3
WD40 1/1 694 718 .. 13 38 .] 8.2 0.054
DUF2394 1/1 697 707 .. 10 20 .. 4.2 1.9
Cytochrom_D1 1/1 698 708 .. 191 201 .. -0.7 9.6
Pec_lyase_N 1/1 730 742 .. 68 79 .] 0.6 4.3
Rossmann-like 1/1 739 749 .. 125 135 .] 3.4 0.65
Tfb4 1/1 800 818 .. 1 20 [. 0.2 9
Lpp-LpqN 1/1 835 843 .. 273 281 .] 1.9 2.3
Ivy 1/1 850 858 .. 119 127 .] 2.2 3.2
Reg_prop 1/1 874 897 .. 1 23 [] 6.0 3.6
DUF1979 1/1 878 926 .. 11 58 .] 1.6 4.5
DM13 1/1 881 919 .. 35 81 .. 9.0 0.062
Beta_propel 1/1 904 918 .. 717 731 .] -0.4 5.6
Alignments of top-scoring domains:
UEV: domain 1 of 1, from 46 to 60: score 2.7, E = 2.1
CS HHHHHHHHHHH-T.TE
*->tfkDvvnvlrkfpKsL<-*
t++D+ ++l++f +L
gi|1583348 46 TIEDITQTLSQFQ-DL 60
DUF1314: domain 1 of 1, from 62 to 70: score 1.5, E = 3.4
*->nsrilakGS<-*
n++i+++GS
gi|1583348 62 NIHIISHGS 70
RyR: domain 1 of 1, from 106 to 118: score 1.9, E = 7.8
*->LLayGynverade<-*
LL yG+n+ ++d
gi|1583348 106 LLFYGCNISAGDD 118
Adap_comp_sub: domain 1 of 1, from 211 to 232: score 1.8, E = 2.7
*->c.snykpyKWVRYvTksgtsyqvRi<-*
+++n+++++ VR+vT+ + ++vRi
gi|1583348 211 NgPNPSTVR-VRNVTSNS--FEVRI 232
fn3: domain 1 of 1, from 212 to 231: score 3.7, E = 2.5
CS ----CEEEEEEECTTEEEEE
*->PsaPtnltvtdvtstsltls<-*
+ P+ ++v++vts+s+ ++
gi|1583348 212 GPNPSTVRVRNVTSNSFEVR 231
DUF2355: domain 1 of 1, from 236 to 260: score 3.6, E = 0.57
*->neLnPhHTLenllyllksdrsnLGR<-*
++L+++HTLe l yl++ + + +
gi|1583348 236 EYLDEQHTLESLGYLVVEEGIHTLA 260
CBM_25: domain 1 of 1, from 251 to 267: score 2.6, E = 3.7
*->afssGvnTvadGvvgrg<-*
+++ G++T+adG+v +
gi|1583348 251 VVEEGIHTLADGTVLQA 267
H_lectin: domain 1 of 2, from 272 to 289: score 2.3, E = 9.7
*->preatktvtFskpFsniP<-*
+ +++ +++F++ F+ +P
gi|1583348 272 SDNDWASIDFTSAFNDTP 289
DUF552: domain 1 of 1, from 297 to 310: score 4.4, E = 1.9
*->sfedaqeIadaLkn<-*
s ++a +a++L+n
gi|1583348 297 SENEAAAVAEHLRN 310
OAD_gamma: domain 1 of 1, from 301 to 310: score 2.3, E = 5.1
*->tAAIhahrre<-*
+AA+++h+r
gi|1583348 301 AAAVAEHLRN 310
H_lectin: domain 2 of 2, from 310 to 321: score 0.2, E = 35
*->nvtttgFtiPvfq<-*
n+++tgF++ ++q
gi|1583348 310 NISNTGFDL-RLQ 321
Silic_transp: domain 1 of 1, from 321 to 333: score -0.8, E = 5.8
*->eekeAadqkdsvD<-*
+e+eAadq+++v+
gi|1583348 321 QEEEAADQTHAVE 333
Prd1-P2: domain 1 of 1, from 371 to 404: score 8.2, E = 0.0077
CS EETTEE EEEE--B-TT--B-B-EEEEEEE--XX
*->AyrGGv.mFiGsARYtEGGDPLPiKYRAviPaLP<-*
A++G +++F+ A GGDP i+YR + P+
gi|1583348 371 AFSGDIpVFLAQANTSNGGDPFAIRYRTLAPTGT 404
Calx-beta: domain 1 of 3, from 455 to 473: score 1.1, E = 14
*->VlEndGevevcVvrmggapel<-*
V+E+ G+v+++ vr g+ +l
gi|1583348 455 VNESAGVVTITAVRSGP--AL 473
DUF1775: domain 1 of 1, from 457 to 491: score 4.7, E = 0.44
*->lsalvvstlafsaapAsAHVtlepkeAaaGSyyka<-*
sa vv+++a+ ++pA+A +tle ++ ++GS+++a
gi|1583348 457 ESAGVVTITAVRSGPALAPATLEYTTNEVGSSDTA 491
Calx-beta: domain 2 of 3, from 508 to 543: score 24.6, E = 5.7e-06
*->egtiLtFgPgedtekcinvtiiDDdvyEgdEnFfvrLs<-*
+g+ +tF+ ge +k++ ++iiDD +Eg+E+F+v +
gi|1583348 508 TGE-ITFSIGE-MVKTFTIPIIDDTLLEGNETFSVGIQ 543
CopC: domain 1 of 2, from 508 to 516: score 3.1, E = 1.8
CS EEEEEEEE-
*->tGsitFsVk<-*
tG itFs++
gi|1583348 508 TGEITFSIG 516
CopC: domain 2 of 2, from 533 to 541: score 0.5, E = 10
CS EEEEEEEE-
*->tGsitFsVk<-*
+G+ tFsV+
gi|1583348 533 EGNETFSVG 541
Calx-beta: domain 3 of 3, from 556 to 655: score 113.2, E = 8.9e-31
*->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr
+ vtI+Ddd a++++ +t ++V +E ++++ ++V r g+ +
gi|1583348 556 TLVTIIDDDAASTLSVTDTAINV--EEGTATASITVQRSGN---SAS 597
tVtVsyrTeDGTAtaGPgsDYeptegtiLtFgPgedtekcinvtiiDDdv
+V+++T DGTA aG +DY +t+gt LtF +g+ t ++ v+i++D v
gi|1583348 598 AASVDFSTRDGTAIAG--QDYRATSGT-LTFAAGQ-TSQTLTVPILNDIV 643
yEgdEnFfvrLs<-*
+EgdE F+v Ls
gi|1583348 644 VEGDEIFSVTLS 655
PfkB: domain 1 of 1, from 581 to 602: score 0.2, E = 8.3
CS HHHHHHHHHTSSSSGGG SSSH
*->anavAalvvqkkGaiss.lptl<-*
++a+A+++vq++G +s +
gi|1583348 581 GTATASITVQRSGNSASaASVD 602
Polyoma_lg_T_C: domain 1 of 1, from 592 to 637: score -0.7, E = 4.3
*->stesqsqcksqvssgeesgideqsqgsdphsqefhlckgfqcfkkp<
s +s s + s+ + ++i+ q+ ++ + f + + +q++ +p
gi|1583348 592 SGNSASAASVDFSTRDGTAIAGQDYRATSGTLTFAAGQTSQTLTVP 637
-*
gi|1583348 - -
DUF291: domain 1 of 1, from 622 to 636: score 4.2, E = 2.8
*->TFdFsaGaTadpvLtv<-*
T+ F aG ++++Ltv
gi|1583348 622 TLTFAAGQ-TSQTLTV 636
SGL: domain 1 of 1, from 687 to 708: score 1.4, E = 3.8
*->ldgvtisNGlawSpDgktlYfa<-*
++g+t + +l w+pDg++l +a
gi|1583348 687 VSGLTQPTTLDWTPDGRYLLVA 708
eIF2A: domain 1 of 1, from 694 to 706: score 1.6, E = 5.3
*->tvceWsPdGryfl<-*
t+ +W PdGry+l
gi|1583348 694 TTLDWTPDGRYLL 706
WD40: domain 1 of 1, from 694 to 718: score 8.2, E = 0.054
CS EEEEEETTSSSEEEEEETTSEEEEEE
*->tcvafspdsgpllasgSrDgtikiWd<-*
t +++ pd g++l+ + g +++ d
gi|1583348 694 TTLDWTPD-GRYLLVAQKNGVVRVID 718
DUF2394: domain 1 of 1, from 697 to 707: score 4.2, E = 1.9
*->vftPdgkflvv<-*
++tPdg++l+v
gi|1583348 697 DWTPDGRYLLV 707
Cytochrom_D1: domain 1 of 1, from 698 to 708: score -0.7, E = 9.6
CS E-TTSSEEEEE
*->fdpdgRYflaA<-*
++pdgRY+l+A
gi|1583348 698 WTPDGRYLLVA 708
Pec_lyase_N: domain 1 of 1, from 730 to 742: score 0.6, E = 4.3
*->lkssrNsTR.ReL<-*
l+s +N+TR+R+L
gi|1583348 730 LSSQVNDTRdRGL 742
Rossmann-like: domain 1 of 1, from 739 to 749: score 3.4, E = 0.65
*->esGaIPLaiHP<-*
++G + LaiHP
gi|1583348 739 DRGLLGLAIHP 749
Tfb4: domain 1 of 1, from 800 to 818: score 0.2, E = 9
*->epSLLVvllDtNPlfWstla<-*
+pS LVvl tN+ W+ ++
gi|1583348 800 DPSSLVVLAGTNS-TWANTS 818
Lpp-LpqN: domain 1 of 1, from 835 to 843: score 1.9, E = 2.3
*->IinGFtVav<-*
I+nG+t+++
gi|1583348 835 IVNGTTITA 843
Ivy: domain 1 of 1, from 850 to 858: score 2.2, E = 3.2
CS HHHHCTSTT
*->tgqLenDPN<-*
tg+++nDPN
gi|1583348 850 TGTQDNDPN 858
Reg_prop: domain 1 of 1, from 874 to 897: score 6.0, E = 3.6
*->slpgg.vtfalledsdGrlWigt.n<-*
+ + ++ +l ++dG+l++++++
gi|1583348 874 DSESHsIG-DLEFGPDGYLYLSNgD 897
DUF1979: domain 1 of 1, from 878 to 926: score 1.6, E = 4.5
*->hgeGnvRyGPtG.vDLsdFivserGiDRPAERsvpsikgWLmRGlRv
h G + +GP+G Ls+ ++ P v+ i + + lR+
gi|1583348 878 HSIGDLEFGPDGyLYLSNGDGTSYNFVDPRGVRVQDINNLSGKVLRI 924
Dp<-*
Dp
gi|1583348 925 DP 926
DM13: domain 1 of 1, from 881 to 919: score 9.0, E = 0.062
*->gdfapsgGPDlkvyLspgapfveteagflrlkdeyfvelGpLKtfkg
gd++ GPD ++yLs+g + ++++ ++++ v++ ++ + +g
gi|1583348 881 GDLEF--GPDGYLYLSNG-----DGTSYNFVDPRG-VRVQDINNLSG 919
<-*
gi|1583348 - -
Beta_propel: domain 1 of 1, from 904 to 918: score -0.4, E = 5.6
*->iSdseirvsdlntle<-*
++ +++rv+d+n+l+
gi|1583348 904 VDPRGVRVQDINNLS 918
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