hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            158336834.fa
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Query sequence: gi|158336834|ref|YP_001518008.1|
Accession:      [none]
Description:    hypothetical protein AM1_3702 [Acaryochloris marina MBIC11017]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
DUF932          Domain of unknown function (DUF932)       2.2        1.4   1
DUF305          Domain of unknown function (DUF305)       2.8        3.7   1
GFRP            GTP cyclohydrolase I feedback regulat     1.8          6   1
Diphtheria_R    Diphtheria toxin, R domain               -0.4        6.7   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
GFRP              1/1      35    47 ..     1    13 [.     1.8        6
DUF305            1/1      52    64 ..    41    53 .]     2.8      3.7
DUF932            1/1      96   108 ..   264   276 .]     2.2      1.4
Diphtheria_R      1/1     121   130 ..   145   154 .]    -0.4      6.7

Alignments of top-scoring domains:
GFRP: domain 1 of 1, from 35 to 47: score 1.8, E = 6
                CS    EEEEEEES-TTS-
                   *->PYLListqiRmEv<-*
                      PYLL s  + mEv
  gi|1583368    35    PYLLASPLLGMEV    47

DUF305: domain 1 of 1, from 52 to 64: score 2.8, E = 3.7
                   *->aQqaEIaqMrgWL<-*
                      aQ+  IaqM+ +L
  gi|1583368    52    AQTDGIAQMKSLL    64

DUF932: domain 1 of 1, from 96 to 108: score 2.2, E = 1.4
                   *->LWvLAEemrelKa<-*
                      LW  A+++r++++
  gi|1583368    96    LWAYADQFRQWRS    108

Diphtheria_R: domain 1 of 1, from 121 to 130: score -0.4, E = 6.7
                CS    EEEEEE-EEE
                   *->sKLsLFFEiK<-*
                      sKLsLF+  +
  gi|1583368   121    SKLSLFYHFR    130

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