hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 158337649.fa
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Query sequence: gi|158337649|ref|YP_001518824.1|
Accession: [none]
Description: VCBS [Acaryochloris marina MBIC11017]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FG-GAP FG-GAP repeat 122.8 6.7e-35 6
HemolysinCabind Hemolysin-type calcium-binding repeat 98.2 1.3e-28 8
Dockerin_1 Dockerin type I repeat 25.6 9.1e-07 6
LVIVD LVIVD repeat 18.6 0.00015 7
Flagellin_IN Flagellin hook IN motif 12.8 0.0093 5
GBP_C Guanylate-binding protein, C-terminal 7.5 0.054 4
Adeno_shaft Adenoviral fibre protein (repeat/shaf 10.8 0.085 3
Chlam_PMP Chlamydia polymorphic membrane protei 11.1 0.1 2
HYR HYR domain 7.0 0.19 1
PKD PKD domain 6.3 0.21 3
DUF2604 Protein of Unknown function (DUF2604) 5.2 0.38 1
Fil_haemagg Haemagluttinin repeat 6.4 0.4 1
Pencillinase_R Penicillinase repressor 6.7 0.43 1
PNPOx_C Pyridoxine 5'-phosphate oxidase C-ter 2.8 0.78 1
Gene66 Gene 66 (IR5) protein 3.2 0.79 1
AAA_4 Divergent AAA domain 5.6 0.8 3
Ail_Lom Enterobacterial Ail/Lom protein 4.5 0.82 1
Gelsolin Gelsolin repeat 5.3 0.95 1
RSV_NS2 Respiratory synctial virus non-struct 3.0 1.1 1
Big_4 Bacterial Ig-like domain (group 4) 5.3 1.5 2
Peptidase_M10_C Peptidase M10 serralysin C terminal 2.4 1.9 1
CBM_17_28 Carbohydrate binding domain (family 1 2.5 2 1
HMG_CoA_synt_N Hydroxymethylglutaryl-coenzyme A synt 1.7 2.3 1
Phage_endo_I Phage endonuclease I 2.0 2.4 1
GXGXG GXGXG motif 2.3 3.3 1
Indigoidine_A Indigoidine synthase A like protein 2.0 3.3 1
Reovirus_M2 Reovirus major virion structural prot -1.3 4.4 1
Cadherin Cadherin domain 2.8 4.5 1
DUF586 Protein of unknown function, DUF586 2.1 4.8 5
M3 M3 0.6 4.9 1
F420_oxidored NADP oxidoreductase coenzyme F420-dep 1.1 5.5 1
Hema_HEFG Hemagglutinin domain of haemagglutini 1.2 5.5 1
UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase 2.0 5.7 1
SurA_N SurA N-terminal domain 1.4 5.9 1
DUF1009 Protein of unknown function (DUF1009) 0.7 6.7 1
DUF2135 Uncharacterized protein conserved in 2.6 7 4
Glyco_hydro_35 Glycosyl hydrolases family 35 -0.2 7.4 1
CARDB CARDB 1.9 7.5 2
G6PD_N Glucose-6-phosphate dehydrogenase, NA -0.4 7.9 1
Es2 Nuclear protein Es2 -1.0 8 1
GT36_AF Glycosyltransferase 36 associated fam 1.9 8.1 1
PEP-utilizers PEP-utilising enzyme, mobile domain 1.9 8.1 2
DUF1586 Protein of unknown function (DUF1586) 2.7 8.5 1
FAD_binding_2 FAD binding domain -0.9 8.7 1
HSP90 Hsp90 protein -0.4 8.8 1
DNA_PPF DNA polymerase processivity factor 1.2 9.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RSV_NS2 1/1 22 38 .. 1 17 [. 3.0 1.1
Indigoidine_A 1/1 68 80 .. 1 13 [. 2.0 3.3
Es2 1/1 172 184 .. 472 491 .] -1.0 8
Adeno_shaft 1/3 245 271 .. 1 26 [. 8.4 0.37
Gelsolin 1/1 259 290 .. 53 91 .] 5.3 0.95
SurA_N 1/1 312 318 .. 1 7 [. 1.4 5.9
Pencillinase_R 1/1 341 367 .. 92 118 .] 6.7 0.43
Glyco_hydro_35 1/1 369 378 .. 1 10 [. -0.2 7.4
DUF2604 1/1 370 381 .. 1 12 [. 5.2 0.38
Chlam_PMP 1/2 405 434 .. 1 19 [] 2.6 21
GXGXG 1/1 484 500 .. 109 125 .. 2.3 3.3
Big_4 1/2 485 500 .. 48 62 .] 4.5 2.5
Flagellin_IN 1/5 489 508 .. 1 20 [. 1.0 21
PEP-utilizers 1/2 489 497 .. 83 92 .] 0.6 19
DUF1586 1/1 538 558 .. 1 22 [] 2.7 8.5
Flagellin_IN 2/5 555 579 .. 1 25 [. 7.3 0.34
PEP-utilizers 2/2 555 563 .. 83 92 .] 1.3 12
FAD_binding_2 1/1 587 597 .. 1 11 [. -0.9 8.7
DUF1009 1/1 617 626 .. 212 221 .] 0.7 6.7
UDPG_MGDP_dh_N 1/1 620 628 .. 1 9 [. 2.0 5.7
F420_oxidored 1/1 621 632 .. 1 13 [. 1.1 5.5
Gene66 1/1 638 669 .. 1 34 [. 3.2 0.79
Flagellin_IN 3/5 654 676 .. 1 25 [. 4.2 2.5
Fil_haemagg 1/1 710 787 .. 1 75 [] 6.4 0.4
Adeno_shaft 2/3 782 792 .. 20 30 .] 0.6 53
HSP90 1/1 782 796 .. 485 499 .. -0.4 8.8
Big_4 2/2 812 825 .. 49 62 .] 0.8 25
Chlam_PMP 2/2 830 855 .. 1 19 [] 8.5 0.51
HemolysinCabind 1/8 846 856 .. 8 18 .] 5.2 2.1
HemolysinCabind 2/8 906 916 .. 8 18 .] 8.9 0.16
Peptidase_M10_C 1/1 910 933 .. 39 62 .. 2.4 1.9
M3 1/1 1096 1105 .. 375 384 .] 0.6 4.9
HemolysinCabind 3/8 1104 1112 .. 10 18 .] 3.9 5
GT36_AF 1/1 1182 1203 .. 71 92 .] 1.9 8.1
CARDB 1/2 1183 1213 .. 63 93 .. 0.9 14
Cadherin 1/1 1187 1218 .. 69 107 .] 2.8 4.5
HYR 1/1 1194 1217 .. 66 86 .] 7.0 0.19
PKD 1/3 1196 1213 .. 75 92 .] 2.1 4.1
Ail_Lom 1/1 1225 1262 .. 15 52 .. 4.5 0.82
DUF2135 1/4 1231 1245 .. 47 61 .] 0.7 25
LVIVD 1/7 1267 1278 .. 1 12 [. 2.9 5.7
Reovirus_M2 1/1 1293 1308 .. 1 17 [. -1.3 4.4
DUF586 1/5 1313 1319 .. 1 7 [. 0.4 16
CBM_17_28 1/1 1316 1369 .. 174 224 .] 2.5 2
Hema_HEFG 1/1 1363 1397 .. 130 165 .] 1.2 5.5
LVIVD 2/7 1370 1381 .. 1 12 [. 2.9 5.7
Adeno_shaft 3/3 1375 1389 .. 11 25 .. 1.7 27
Flagellin_IN 4/5 1420 1441 .. 1 27 [. 0.2 34
DUF2135 2/4 1437 1451 .. 47 61 .] 0.7 25
LVIVD 3/7 1473 1484 .. 1 12 [. 2.9 5.7
GBP_C 1/4 1478 1487 .. 1 11 [. 1.9 2.2
DUF586 2/5 1519 1525 .. 1 7 [. 0.4 16
DUF2135 3/4 1540 1554 .. 47 61 .] 0.7 25
LVIVD 4/7 1576 1587 .. 1 12 [. 1.5 15
DNA_PPF 1/1 1593 1609 .. 104 120 .] 1.2 9.3
PKD 2/3 1612 1629 .. 75 92 .] 2.3 3.7
Flagellin_IN 5/5 1626 1647 .. 1 27 [. 0.2 34
DUF2135 4/4 1643 1657 .. 47 61 .] 0.7 25
LVIVD 5/7 1679 1690 .. 1 12 [. 2.9 5.7
GBP_C 2/4 1684 1693 .. 1 11 [. 1.9 2.2
DUF586 3/5 1725 1731 .. 1 7 [. 0.4 16
LVIVD 6/7 1782 1793 .. 1 12 [. 2.9 5.7
GBP_C 3/4 1787 1796 .. 1 11 [. 1.9 2.2
DUF586 4/5 1828 1834 .. 1 7 [. 0.4 16
LVIVD 7/7 1885 1896 .. 1 12 [. 2.9 5.7
GBP_C 4/4 1890 1899 .. 1 11 [. 1.9 2.2
CARDB 2/2 1891 1929 .. 43 85 .. 1.1 13
PKD 3/3 1921 1938 .. 75 92 .] 2.0 4.6
DUF586 5/5 1931 1937 .. 1 7 [. 0.4 16
G6PD_N 1/1 1988 1995 .. 1 8 [. -0.4 7.9
HemolysinCabind 4/8 2015 2032 .. 1 18 [] 4.2 4.1
HemolysinCabind 5/8 2033 2050 .. 1 18 [] 21.9 1.8e-05
HemolysinCabind 6/8 2051 2068 .. 1 18 [] 21.3 2.8e-05
FG-GAP 1/6 2105 2133 .. 1 36 [] 21.6 2.5e-05
Dockerin_1 1/6 2113 2119 .. 1 7 [. 4.5 3
AAA_4 1/3 2151 2158 .. 1 9 [. 1.9 8.4
FG-GAP 2/6 2162 2190 .. 1 36 [] 19.6 9.7e-05
Dockerin_1 2/6 2170 2176 .. 1 7 [. 4.5 3
AAA_4 2/3 2208 2215 .. 1 9 [. 1.9 8.4
FG-GAP 3/6 2219 2247 .. 1 36 [] 20.7 4.7e-05
Dockerin_1 3/6 2227 2233 .. 1 7 [. 4.5 3
FG-GAP 4/6 2276 2304 .. 1 36 [] 20.9 4e-05
Dockerin_1 4/6 2284 2290 .. 1 7 [. 4.5 3
AAA_4 3/3 2322 2329 .. 1 9 [. 1.9 8.4
FG-GAP 5/6 2333 2361 .. 1 36 [] 21.6 2.6e-05
Dockerin_1 5/6 2341 2347 .. 1 7 [. 3.6 5.8
Phage_endo_I 1/1 2378 2391 .. 62 75 .. 2.0 2.4
PNPOx_C 1/1 2378 2393 .. 26 57 .] 2.8 0.78
FG-GAP 6/6 2390 2418 .. 1 36 [] 18.3 0.00023
Dockerin_1 6/6 2398 2408 .. 1 11 [. 4.0 4.3
HemolysinCabind 7/8 2424 2436 .. 6 18 .] 9.0 0.15
HMG_CoA_synt_N 1/1 2425 2452 .. 147 174 .] 1.7 2.3
HemolysinCabind 8/8 2437 2454 .. 1 18 [] 23.8 4.9e-06
Alignments of top-scoring domains:
RSV_NS2: domain 1 of 1, from 22 to 38: score 3.0, E = 1.1
*->mdttnndittqRLvvtD<-*
+ t+ nd t+qRLv+ D
gi|1583376 22 VLTSLNDLTSQRLVIID 38
Indigoidine_A: domain 1 of 1, from 68 to 80: score 2.0, E = 3.3
CS X-EEE---TTS-E
*->peVkeALenGkPV<-*
p+V++AL +PV
gi|1583376 68 PQVTQALRTDVPV 80
Es2: domain 1 of 1, from 172 to 184: score -1.0, E = 8
*->lafGsrTPgaakLtPAA.qrL<-*
l+ G L+PA++qrL
gi|1583376 172 LSAG--------LSPALsQRL 184
Adeno_shaft: domain 1 of 3, from 245 to 271: score 8.4, E = 0.37
CS S--EEE-B-TTEEE-T S-EEE-B-TT
*->nnsLtlntgpGLtvtn.naLalklGag<-*
+Lt++ g+G+ +t +L+ +l+ag
gi|1583376 245 LEQLTVAFGDGIDLTAaTQLQAQLSAG 271
Gelsolin: domain 1 of 1, from 259 to 290: score 5.3, E = 0.95
CS HHHHHHHHHHHHHHCHHHTTTTTSEEEEEETTCCCHHHH
*->lfaallaaqlddAqmlsdergplpevdrvvqgkeparFl<-*
++a++l aql +++ ++lp ++ ++e+a +l
gi|1583376 259 TAATQLQAQLS-----AGD-FELPKIEI-RTSGELAGLL 290
SurA_N: domain 1 of 1, from 312 to 318: score 1.4, E = 5.9
*->LDRIVAV<-*
LD+IVAV
gi|1583376 312 LDQIVAV 318
Pencillinase_R: domain 1 of 1, from 341 to 367: score 6.7, E = 0.43
CS XXXXXXXXXXXXXXXXXXXXXXXXXXX
*->galvanfleeeklSeddieeLrelLde<-*
g+ +++++ ++lS+++++ Lr+ +d+
gi|1583376 341 GNIFSHLVRGQELSASELQGLRAEVDH 367
Glyco_hydro_35: domain 1 of 1, from 369 to 378: score -0.2, E = 7.4
*->sFllDGqpfr<-*
+++lDGqp +
gi|1583376 369 TLMLDGQPVQ 378
DUF2604: domain 1 of 1, from 370 to 381: score 5.2, E = 0.38
*->VVVNGqPvdVEA<-*
GqPv+VEA
gi|1583376 370 LMLDGQPVQVEA 381
Chlam_PMP: domain 1 of 2, from 405 to 434: score 2.6, E = 21
*->ditFsgNsa...........aggGGAiyas<-*
+i++++N + + +++ + a++GG+ ++
gi|1583376 405 NIVLDNNVTvsvvngnltmlANNGGGAAGN 434
GXGXG: domain 1 of 1, from 484 to 500: score 2.3, E = 3.3
CS T--CEEEEESSEE-TTT
*->GatGGkifiaGdAGerf<-*
Ga++G+i+i+G AG+ +
gi|1583376 484 GASAGTITINGTAGDGT 500
Big_4: domain 1 of 2, from 485 to 500: score 4.5, E = 2.5
*->akaGtfeVtGtV.eGt<-*
a+aGt +++Gt+++Gt
gi|1583376 485 ASAGTITINGTAgDGT 500
Flagellin_IN: domain 1 of 5, from 489 to 508: score 1.0, E = 21
*->tltinggggkensvadgvdi<-*
t+ting+ g+++ dgv i
gi|1583376 489 TITINGTAGDGTLLNDGVQI 508
PEP-utilizers: domain 1 of 2, from 489 to 497: score 0.6, E = 19
CS EEEE.CTSEE
*->iitvCDGstG<-*
+it+ +G++G
gi|1583376 489 TITI-NGTAG 497
DUF1586: domain 1 of 1, from 538 to 558: score 2.7, E = 8.5
*->sRtALAAvsqtPtgAnAewhll<-*
+ A vs t tgAnA +
gi|1583376 538 -KVQSAQVSSTGTGANAATITI 558
Flagellin_IN: domain 2 of 5, from 555 to 579: score 7.3, E = 0.34
*->tltinggggkensvadgvdislsag<-*
t+ting++g+++s+ +gv+i+ + g
gi|1583376 555 TITINGTSGGGSSDNSGVRIEGTTG 579
PEP-utilizers: domain 2 of 2, from 555 to 563: score 1.3, E = 12
CS EEEE.CTSEE
*->iitvCDGstG<-*
+it+ +G++G
gi|1583376 555 TITI-NGTSG 563
FAD_binding_2: domain 1 of 1, from 587 to 597: score -0.9, E = 8.7
CS SEEEE--SHHH
*->DVvViGsGlAG<-*
D+++ G G+AG
gi|1583376 587 DILITGQGGAG 597
DUF1009: domain 1 of 1, from 617 to 626: score 0.7, E = 6.7
*->ADaaGlfvvG<-*
A+aa+++++G
gi|1583376 617 ANAANITIIG 626
UDPG_MGDP_dh_N: domain 1 of 1, from 620 to 628: score 2.0, E = 5.7
CS -EEEEE--S
*->mkIaViGlG<-*
++I++iG+G
gi|1583376 620 ANITIIGTG 628
F420_oxidored: domain 1 of 1, from 621 to 632: score 1.1, E = 5.5
CS EEEEETTTSHHHH
*->kIGiIGGaGnmGe<-*
+I iI G+G+ G+
gi|1583376 621 NITII-GTGSSGS 632
Gene66: domain 1 of 1, from 638 to 669: score 3.2, E = 0.79
*->mDgAYGhvhngsPmAvDGevrtagtGdgaGaeGL<-*
+D G g vDG v gtG+ + a+G+
gi|1583376 638 IDSTSG--VSGQISTVDGRVTINGTGTTGNADGV 669
Flagellin_IN: domain 3 of 5, from 654 to 676: score 4.2, E = 2.5
*->tltinggggkensvadgvdislsag<-*
+ting+g+++n adgv++ +a+
gi|1583376 654 RVTINGTGTTGN--ADGVRLRNDAV 676
Fil_haemagg: domain 1 of 1, from 710 to 787: score 6.4, E = 0.4
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
a+Ga tl+ + + + +gg+++++g+l+++ + g ++
gi|1583376 710 SASGAITLTTD----GINIQGGSIQSSGALVIQQVTASESIGIGGGA 752
CS .............. .EEEEESS-EEEEE
gdlllaagalrngg.......dltltaaGdLdnsg<-*
g+l+++a+ l+ ++ ++ + ++ +++G++++++
gi|1583376 753 GTLNIDAAELSRLTdgfssitFGASNSTGTVTLGS 787
Adeno_shaft: domain 2 of 3, from 782 to 792: score 0.6, E = 53
CS EE-B-TTEEEE
*->alklGagLtvd<-*
++ lG+g+t++
gi|1583376 782 TVTLGSGFTLN 792
HSP90: domain 1 of 1, from 782 to 796: score -0.4, E = 8.8
CS XXXXXXXXXXXXXXX
*->TALLtSGFsLedPka<-*
T +L SGF+L+dP++
gi|1583376 782 TVTLGSGFTLNDPTT 796
Big_4: domain 2 of 2, from 812 to 825: score 0.8, E = 25
*->kaGtfeVtGtVeGt<-*
+a+tf+VtGt +G+
gi|1583376 812 TATTFTVTGTEAGS 825
Chlam_PMP: domain 2 of 2, from 830 to 855: score 8.5, E = 0.51
*->ditFsgNsa.......aggGGAiyas<-*
+itFsgNs+ ++ ++ +GGA +++
gi|1583376 830 GITFSGNSSlafnnatTLQGGAGSNT 855
HemolysinCabind: domain 1 of 8, from 846 to 856: score 5.2, E = 2.1
CS EEEEESSCGEE
*->tLyGgaGnDtl<-*
tL GgaG +t+
gi|1583376 846 TLQGGAGSNTI 856
HemolysinCabind: domain 2 of 8, from 906 to 916: score 8.9, E = 0.16
CS EEEEESSCGEE
*->tLyGgaGnDtl<-*
tL+GgaGn+tl
gi|1583376 906 TLDGGAGNNTL 916
Peptidase_M10_C: domain 1 of 1, from 910 to 933: score 2.4, E = 1.9
CS SSSS-EEE-TT--S--EEE-STT-
RF xxxxxxxxxxxxxxxxxxxxxxxx
*->agGndtlDFsGfsqnqrinLnegs<-*
+ Gn+tlD s ++ n nLn+++
gi|1583376 910 GAGNNTLDLSAYTSNLTFNLNSAG 933
M3: domain 1 of 1, from 1096 to 1105: score 0.6, E = 4.9
*->GQeyRleYlG<-*
GQ++ l+Y G
gi|1583376 1096 GQQFQLSYTG 1105
HemolysinCabind: domain 3 of 8, from 1104 to 1112: score 3.9, E = 5
CS EEESSCGEE
*->yGgaGnDtl<-*
+Gg+GnD+
gi|1583376 1104 TGGDGNDVV 1112
GT36_AF: domain 1 of 1, from 1182 to 1203: score 1.9, E = 8.1
*->elpPGeereivfiLGaaenree<-*
+l +Ge r ++f + a++n e
gi|1583376 1182 NLAAGEMRDVSFTYTATDNSGE 1203
CARDB: domain 1 of 2, from 1183 to 1213: score 0.9, E = 14
*->LaaGesttvsfswtpersiteGnyttlkvvv<-*
LaaGe ++vsf++t++ ++ e n t+ +++v
gi|1583376 1183 LAAGEMRDVSFTYTATDNSGESNATSASATV 1213
Cadherin: domain 1 of 1, from 1187 to 1218: score 2.8, E = 4.5
CS ....S-B--EEE----.........S---EEEE--EEE-
*->eifngeYeLtveAtDadpllasgggpplsstatvtitVl<-*
e+ + +++t AtD+ sg + + s+ atvt+tV
gi|1583376 1187 EM--RDVSFTYTATDN-----SGESNATSASATVTVTVS 1218
HYR: domain 1 of 1, from 1194 to 1217: score 7.0, E = 0.19
*->tYtatDnaGN....eAdsCtFtVtV<-*
tYtatDn+G ++ ++A s t+tVtV
gi|1583376 1194 TYTATDNSGEsnatSA-SATVTVTV 1217
PKD: domain 1 of 3, from 1196 to 1213: score 2.1, E = 4.1
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
t++++ g ++at+++ tV
gi|1583376 1196 TATDNSGESNATSASATV 1213
Ail_Lom: domain 1 of 1, from 1225 to 1262: score 4.5, E = 0.82
*->LvvaGvPAsAaEHqstLsAGYLqastDaPGsDDLnGin<-*
+v+a v A A+E +t Lq tD D Ln in
gi|1583376 1225 VVAAAVTATASEDAATFNVDLLQGATDPDTTDTLNAIN 1262
DUF2135: domain 1 of 4, from 1231 to 1245: score 0.7, E = 25
*->ivtPnEkretfvvpl<-*
+ t++E+++tf v+l
gi|1583376 1231 TATASEDAATFNVDL 1245
LVIVD: domain 1 of 7, from 1267 to 1278: score 2.9, E = 5.7
*->gGdaqdvsVsGN<-*
Gda++v+V GN
gi|1583376 1267 SGDASGVTVNGN 1278
Reovirus_M2: domain 1 of 1, from 1293 to 1308: score -1.3, E = 4.4
CS XXXXXXXXBXTTSSSXE
*->GtvssiVnTiNvTGDGN<-*
G iV +N+T DGN
gi|1583376 1293 GESEVIVYSYNIT-DGN 1308
DUF586: domain 1 of 5, from 1313 to 1319: score 0.4, E = 16
*->pqtAvVv<-*
pqtA+V+
gi|1583376 1313 PQTATVT 1319
CBM_17_28: domain 1 of 1, from 1316 to 1369: score 2.5, E = 2
CS EEEEEETT TXHHHHHH HTXTTSXEEEEEEEEEEESX...SSEEE
*->Alltitse.DsPnleti..akdsedstlnNIILfVGtensdfaDvIs
A++tit+++D+P + +a+ ed+ N+ L G+ + d +D I
gi|1583376 1316 ATVTITGAnDAPVVAAAvtATATEDTATFNVSLLAGATDPDTTDTIN 1362
CS EEEEEEE
LDNIkvt<-*
N +vt
gi|1583376 1363 VSNLTVT 1369
Hema_HEFG: domain 1 of 1, from 1363 to 1397: score 1.2, E = 5.5
CS TS-----STT...S-EEEEEEEEE-SEEEEEEE-TT
*->nStltitsgdkdPglDltCdYLaLkPGnYsaiSnek<-*
+S lt+tsgd g + + L+ P Y++ ++
gi|1583376 1363 VSNLTVTSGD-ASGVTVNGNSLQVNPSAYNSLAVGE 1397
LVIVD: domain 2 of 7, from 1370 to 1381: score 2.9, E = 5.7
*->gGdaqdvsVsGN<-*
Gda++v+V GN
gi|1583376 1370 SGDASGVTVNGN 1381
Adeno_shaft: domain 3 of 3, from 1375 to 1389: score 1.7, E = 27
CS TEEE-TS-EEE-B-T
*->GLtvtnnaLalklGa<-*
G tv++n+L+++ +a
gi|1583376 1375 GVTVNGNSLQVNPSA 1389
Flagellin_IN: domain 4 of 5, from 1420 to 1441: score 0.2, E = 34
*->tltinggggkensvadgvdislsagds<-*
t+ti+g++ v+ ++a++s
gi|1583376 1420 TITITGANDAPV-----VAAAVTATAS 1441
DUF2135: domain 2 of 4, from 1437 to 1451: score 0.7, E = 25
*->ivtPnEkretfvvpl<-*
+ t++E+++tf v+l
gi|1583376 1437 TATASEDAATFNVDL 1451
LVIVD: domain 3 of 7, from 1473 to 1484: score 2.9, E = 5.7
*->gGdaqdvsVsGN<-*
Gda++v+V GN
gi|1583376 1473 SGDASGVTVNGN 1484
GBP_C: domain 1 of 4, from 1478 to 1487: score 1.9, E = 2.2
*->GGiiVTGprLa<-*
G++V+G+rL+
gi|1583376 1478 -GVTVNGNRLE 1487
DUF586: domain 2 of 5, from 1519 to 1525: score 0.4, E = 16
*->pqtAvVv<-*
pqtA+V+
gi|1583376 1519 PQTATVT 1525
DUF2135: domain 3 of 4, from 1540 to 1554: score 0.7, E = 25
*->ivtPnEkretfvvpl<-*
+ t++E+++tf v+l
gi|1583376 1540 TATASEDAATFNVDL 1554
LVIVD: domain 4 of 7, from 1576 to 1587: score 1.5, E = 15
*->gGdaqdvsVsGN<-*
G+a++v+V GN
gi|1583376 1576 SGNASGVTVNGN 1587
DNA_PPF: domain 1 of 1, from 1593 to 1609: score 1.2, E = 9.3
CS --B-GGGS---SS----
*->laAykslisgeskaivl<-*
++Ay+sl +ges iv
gi|1583376 1593 PTAYNSLAVGESEVIVY 1609
PKD: domain 2 of 3, from 1612 to 1629: score 2.3, E = 3.7
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
+vs+g+g ++ +t+t+t+
gi|1583376 1612 VVSDGNGGNTPQTATITI 1629
Flagellin_IN: domain 5 of 5, from 1626 to 1647: score 0.2, E = 34
*->tltinggggkensvadgvdislsagds<-*
t+ti+g++ v+ ++a++s
gi|1583376 1626 TITITGANDAPV-----VAAAVTATAS 1647
DUF2135: domain 4 of 4, from 1643 to 1657: score 0.7, E = 25
*->ivtPnEkretfvvpl<-*
+ t++E+++tf v+l
gi|1583376 1643 TATASEDAATFNVDL 1657
LVIVD: domain 5 of 7, from 1679 to 1690: score 2.9, E = 5.7
*->gGdaqdvsVsGN<-*
Gda++v+V GN
gi|1583376 1679 SGDASGVTVNGN 1690
GBP_C: domain 2 of 4, from 1684 to 1693: score 1.9, E = 2.2
*->GGiiVTGprLa<-*
G++V+G+rL+
gi|1583376 1684 -GVTVNGNRLE 1693
DUF586: domain 3 of 5, from 1725 to 1731: score 0.4, E = 16
*->pqtAvVv<-*
pqtA+V+
gi|1583376 1725 PQTATVT 1731
LVIVD: domain 6 of 7, from 1782 to 1793: score 2.9, E = 5.7
*->gGdaqdvsVsGN<-*
Gda++v+V GN
gi|1583376 1782 SGDASGVTVNGN 1793
GBP_C: domain 3 of 4, from 1787 to 1796: score 1.9, E = 2.2
*->GGiiVTGprLa<-*
G++V+G+rL+
gi|1583376 1787 -GVTVNGNRLE 1796
DUF586: domain 4 of 5, from 1828 to 1834: score 0.4, E = 16
*->pqtAvVv<-*
pqtA+V+
gi|1583376 1828 PQTATVT 1834
LVIVD: domain 7 of 7, from 1885 to 1896: score 2.9, E = 5.7
*->gGdaqdvsVsGN<-*
Gda++v+V GN
gi|1583376 1885 SGDASGVTVNGN 1896
GBP_C: domain 4 of 4, from 1890 to 1899: score 1.9, E = 2.2
*->GGiiVTGprLa<-*
G++V+G+rL+
gi|1583376 1890 -GVTVNGNRLE 1899
CARDB: domain 2 of 2, from 1891 to 1929: score 1.1, E = 13
*->lYvdGtsvlsgtvtVG.d.ipsLaaGesttvsfswtpersiteGn<-
+ v+G+++ V++ ++sLa Ges+ +++s+++ +++++Gn
gi|1583376 1891 VTVNGNRL--E---VNpNaYNSLAVGESEVITYSYVV-SDGNGGN 1929
*
gi|1583376 - -
PKD: domain 3 of 3, from 1921 to 1938: score 2.0, E = 4.6
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
+vs+g+g ++ +t+tvt+
gi|1583376 1921 VVSDGNGGNTPQTATVTI 1938
DUF586: domain 5 of 5, from 1931 to 1937: score 0.4, E = 16
*->pqtAvVv<-*
pqtA+V+
gi|1583376 1931 PQTATVT 1937
G6PD_N: domain 1 of 1, from 1988 to 1995: score -0.4, E = 7.9
CS EETTTSHH
*->VIFGAsGD<-*
+I GA+GD
gi|1583376 1988 TIAGATGD 1995
HemolysinCabind: domain 4 of 8, from 2015 to 2032: score 4.2, E = 4.1
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
++GnDt++G + + +
gi|1583376 2015 KTNGGNDTISGSSQAENI 2032
HemolysinCabind: domain 5 of 8, from 2033 to 2050: score 21.9, E = 1.8e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+ G+GnD+L G++GnDtl
gi|1583376 2033 DAGEGNDSLIGNDGNDTL 2050
HemolysinCabind: domain 6 of 8, from 2051 to 2068: score 21.3, E = 2.8e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG G D+L GgaG+D+l
gi|1583376 2051 IGGLGADILEGGAGDDVL 2068
FG-GAP: domain 1 of 6, from 2105 to 2133: score 21.6, E = 2.5e-05
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
++ ++D+nGDGr+D+v ++ sv++
gi|1583376 2105 DRFPRQLADVNGDGRADIVG-------FGyR-SVVVS 2133
Dockerin_1: domain 1 of 6, from 2113 to 2119: score 4.5, E = 3
CS -TT-SS-
*->DvNgDGk<-*
DvNgDG+
gi|1583376 2113 DVNGDGR 2119
AAA_4: domain 1 of 3, from 2151 to 2158: score 1.9, E = 8.4
*->FANltdGGy<-*
F+N t+GG+
gi|1583376 2151 FSN-TGGGW 2158
FG-GAP: domain 2 of 6, from 2162 to 2190: score 19.6, E = 9.7e-05
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
++ ++D+nGDGr+D+v ++ sv +
gi|1583376 2162 DRFPRQLADVNGDGRADIVG-------FGyR-SVIVS 2190
Dockerin_1: domain 2 of 6, from 2170 to 2176: score 4.5, E = 3
CS -TT-SS-
*->DvNgDGk<-*
DvNgDG+
gi|1583376 2170 DVNGDGR 2176
AAA_4: domain 2 of 3, from 2208 to 2215: score 1.9, E = 8.4
*->FANltdGGy<-*
F+N t+GG+
gi|1583376 2208 FSN-TGGGW 2215
FG-GAP: domain 3 of 6, from 2219 to 2247: score 20.7, E = 4.7e-05
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
++ ++D+nGDGr+D+v ++ sv +
gi|1583376 2219 DRFPRQLADVNGDGRADIVG-------FGyR-SVAVS 2247
Dockerin_1: domain 3 of 6, from 2227 to 2233: score 4.5, E = 3
CS -TT-SS-
*->DvNgDGk<-*
DvNgDG+
gi|1583376 2227 DVNGDGR 2233
FG-GAP: domain 4 of 6, from 2276 to 2304: score 20.9, E = 4e-05
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
++ ++D+nGDGr+D+v ++ sv++
gi|1583376 2276 DRLPRQLADVNGDGRADIVG-------FGyR-SVVVS 2304
Dockerin_1: domain 4 of 6, from 2284 to 2290: score 4.5, E = 3
CS -TT-SS-
*->DvNgDGk<-*
DvNgDG+
gi|1583376 2284 DVNGDGR 2290
AAA_4: domain 3 of 3, from 2322 to 2329: score 1.9, E = 8.4
*->FANltdGGy<-*
F+N t+GG+
gi|1583376 2322 FSN-TGGGW 2329
FG-GAP: domain 5 of 6, from 2333 to 2361: score 21.6, E = 2.6e-05
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
++ ++D+nGDGr+D+v ++ sv++
gi|1583376 2333 DRFPRQLADMNGDGRADIVG-------FGyR-SVVVS 2361
Dockerin_1: domain 5 of 6, from 2341 to 2347: score 3.6, E = 5.8
CS -TT-SS-
*->DvNgDGk<-*
D+NgDG+
gi|1583376 2341 DMNGDGR 2347
Phage_endo_I: domain 1 of 1, from 2378 to 2391: score 2.0, E = 2.4
CS EEEEEESS--HHHH
*->iFvEtKGLWesDDR<-*
+F tKG W sDDR
gi|1583376 2378 VFTHTKGGWTSDDR 2391
PNPOx_C: domain 1 of 1, from 2378 to 2393: score 2.8, E = 0.78
*->rYtreeesseasadggkeskeaekWsieRLaP<-*
++t++ gg W+ + +P
gi|1583376 2378 VFTHT--------KGG--------WTSDDRYP 2393
FG-GAP: domain 6 of 6, from 2390 to 2418: score 18.3, E = 0.00023
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+++ ++D+nGDG +D++ ++++ +v +
gi|1583376 2390 DRYPRQLADVNGDGQADVIG-------FGeS-QVIVS 2418
Dockerin_1: domain 6 of 6, from 2398 to 2408: score 4.0, E = 4.3
CS -TT-SS--SHH
*->DvNgDGkVnal<-*
DvNgDG+ + +
gi|1583376 2398 DVNGDGQADVI 2408
HemolysinCabind: domain 7 of 8, from 2424 to 2436: score 9.0, E = 0.15
CS S-EEEEESSCGEE
*->nDtLyGgaGnDtl<-*
+D+L Gg GnD+l
gi|1583376 2424 DDILIGGTGNDRL 2436
HMG_CoA_synt_N: domain 1 of 1, from 2425 to 2452: score 1.7, E = 2.3
*->DiAiYakgaarPtGGaGavalliGpnAP<-*
Di i g+ r GGaG +l G++A
gi|1583376 2425 DILIGGTGNDRLVGGAGNDILTGGADAD 2452
HemolysinCabind: domain 8 of 8, from 2437 to 2454: score 23.8, E = 4.9e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GGaGnD+L+Gga +Dt+
gi|1583376 2437 VGGAGNDILTGGADADTF 2454
//