hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 158337841.fa
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Query sequence: gi|158337841|ref|YP_001519017.1|
Accession: [none]
Description: hypothetical protein AM1_4727 [Acaryochloris marina MBIC11017]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
VWA von Willebrand factor type A domain 49.3 4.5e-15 1
DUF11 Domain of unknown function DUF11 14.7 0.0039 1
Peptidase_A21 Peptidase family A21 3.1 0.19 1
DUF1036 Protein of unknown function (DUF1036) 3.2 0.91 1
Harpin Harpin protein (HrpN) 1.5 1.7 1
RNA_pol_Rpb4 RNA polymerase Rpb4 3.8 2 1
RPAP1_C RPAP1-like, C-terminal 3.6 2.4 1
Adeno_knob Adenoviral fibre protein (knob domain -2.1 2.9 1
ARS2 Arsenite-resistance protein 2 1.2 3.3 1
PA14_2 GLEYA domain 2.9 3.6 1
DUF1194 Protein of unknown function (DUF1194) 1.5 3.7 1
MCR_gamma Methyl-coenzyme M reductase gamma sub 0.7 5.3 1
Calici_MSP Calicivirus minor structural protein 0.9 5.5 1
PKD PKD domain 1.7 5.5 1
Nrf1_DNA-bind NLS-binding and DNA-binding and dimer 0.4 5.5 1
TIM Triosephosphate isomerase 0.5 6.6 1
Phage_sheath_1 Phage tail sheath protein -1.1 6.8 1
LOH1CR12 Tumour suppressor protein 1.3 7.2 1
NPCBM_assoc NPCBM-associated, NEW3 domain of alph 2.1 7.3 1
Radical_SAM Radical SAM superfamily 1.3 7.6 1
Peptidase_C25_C Peptidase family C25, C terminal ig-l 1.2 8.2 1
Agglutinin Agglutinin 0.0 9.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RNA_pol_Rpb4 1/1 44 60 .. 100 117 .] 3.8 2
Harpin 1/1 210 234 .. 388 414 .] 1.5 1.7
LOH1CR12 1/1 240 246 .. 1 7 [. 1.3 7.2
RPAP1_C 1/1 254 262 .. 1 9 [. 3.6 2.4
Adeno_knob 1/1 256 281 .. 166 195 .] -2.1 2.9
PKD 1/1 264 294 .. 1 38 [. 1.7 5.5
Agglutinin 1/1 295 317 .. 130 154 .] 0.0 9.2
DUF1036 1/1 376 386 .. 124 134 .] 3.2 0.91
PA14_2 1/1 440 463 .. 106 134 .] 2.9 3.6
Peptidase_C25_C 1/1 447 461 .. 10 24 .. 1.2 8.2
VWA 1/1 575 756 .. 1 196 [] 49.3 4.5e-15
DUF1194 1/1 580 596 .. 11 27 .. 1.5 3.7
Phage_sheath_1 1/1 627 650 .. 672 696 .] -1.1 6.8
Calici_MSP 1/1 661 677 .. 156 172 .] 0.9 5.5
Nrf1_DNA-bind 1/1 663 679 .. 54 70 .. 0.4 5.5
Radical_SAM 1/1 699 743 .. 92 137 .. 1.3 7.6
TIM 1/1 713 723 .. 242 252 .] 0.5 6.6
NPCBM_assoc 1/1 838 863 .. 1 26 [. 2.1 7.3
DUF11 1/1 839 877 .. 38 80 .] 14.7 0.0039
ARS2 1/1 882 913 .. 206 243 .] 1.2 3.3
MCR_gamma 1/1 915 923 .. 1 8 [. 0.7 5.3
Peptidase_A21 1/1 956 966 .. 514 524 .. 3.1 0.19
Alignments of top-scoring domains:
RNA_pol_Rpb4: domain 1 of 1, from 44 to 60: score 3.8, E = 2
CS S-HHHH.HHHHHHHHHCS
*->isdeeLieeILdvlskyr<-*
++++ L e+I d+ls+yr
gi|1583378 44 PTGDGL-EQIGDILSNYR 60
Harpin: domain 1 of 1, from 210 to 234: score 1.5, E = 1.7
*->GgsslGIDAalvGDaInNMaLgkLaaa<-*
Gg s+ DA ++ InN L+ L
gi|1583378 210 GGQSI--DALVTVSNINNATLTNLDDN 234
LOH1CR12: domain 1 of 1, from 240 to 246: score 1.3, E = 7.2
*->rFLPVlr<-*
rF+PV+r
gi|1583378 240 RFQPVIR 246
RPAP1_C: domain 1 of 1, from 254 to 262: score 3.6, E = 2.4
*->lselRFDFk<-*
+s++RFDF+
gi|1583378 254 ISSIRFDFQ 262
Adeno_knob: domain 1 of 1, from 256 to 281: score -2.1, E = 2.9
CS EEEEEEE-CCC...TCTTS--BB--EEEEE
*->SItFdwswnktlapeYtnvpFdtssfTFSY<-*
SI Fd++++ t++p++ + +FS
gi|1583378 256 SIRFDFQLVQA----GTTTPLAATNVFFSA 281
PKD: domain 1 of 1, from 264 to 294: score 1.7, E = 5.5
CS EESS.....SSSEBTTEEEEEEECT.B.TT.SSECEEE
*->vsasaveegpsvvalgetVtFtassSydpdpGspvsys<-*
v+a+ +++ + ++V F+a++ d++ Gs+ s++
gi|1583378 264 VQAG-----TTTPLAATNVFFSAQD-VDGN-GSANSVR 294
Agglutinin: domain 1 of 1, from 295 to 317: score 0.0, E = 9.2
*->EFvsylfAessivDetaKDvlevId<-*
EFv ++Ae+ +D+ le
gi|1583378 295 EFVEVINAETVFIDDPT--FLELAA 317
DUF1036: domain 1 of 1, from 376 to 386: score 3.2, E = 0.91
*->eQksWtvqLtD<-*
+Q sWt + +D
gi|1583378 376 RQNSWTFDISD 386
PA14_2: domain 1 of 1, from 440 to 463: score 2.9, E = 3.6
*->spdgnaiattsGsakdvvsyfYsvdtstc<-*
++dg ++a+ + +++Ys++ s++
gi|1583378 440 DEDGVTLAPL-----NASDTSYSIQASSL 463
Peptidase_C25_C: domain 1 of 1, from 447 to 461: score 1.2, E = 8.2
CS SEEETT-SEEEEEES
*->AsipqnqaSysvqcd<-*
A +++++ Sys+q++
gi|1583378 447 APLNASDTSYSIQAS 461
VWA: domain 1 of 1, from 575 to 756: score 49.3, E = 4.5e-15
CS EEEEEEE-CTTS-HHH.HHHHHHHHHHHHHHHC.HTTTTEEEEEEEE
*->DivFllDgSgSigeenlFekvkdFikklveknldigpdgtrvglvqy
D++F+lD SgS++ ++ +++d++ +++ l + + + rvg+v +
gi|1583378 575 DMMFILDKSGSVSLSE-RRLQRDAVMAMLN-YLVDNNITSRVGIVRF 619
CS SSSEEEEE-HHHHHHHSSGGGHC -TTGSS-TC-B-.HHHHHHHHHHH
ssdvrtefsLndysskddllaav...lknlrylgGgTnNtgkALkyalen
s+ t++ +d ++ + + + + gG Tn ++++ a+ +
gi|1583378 620 DSTSATVIGYTDVTAANLPTFESalnTNYVNIGGGATN-WEAGFQQAISL 668
CS TTSGH-TS...GGTTGT.TSEEEEEEEESS--CSSSSCH HHHHHHHHTG
lfssMikrnrtsagsRpenapkvlillTDGksndgglve.aaaalrdkkk
g p + p v++++ DG+ n+gg++ ++a++ +++
gi|1583378 669 -------------GVSP-GSPDVVFFFADGNINSGGSPNdEALQFKQA-- 702
CS GCTCEEEEEEESSSCCHHHHHHHS-SSTCHHHEEEESSCCHHHHH..
gvgitvfavGvGgdvdeaeLrliasepcseghvfyvedfdalwlplq...
g +++++G+ + d ++ i + s+++ f + ++a + ++ +
gi|1583378 703 --GAHIYGIGI-QSLDIDDFLDIT--DGSNTTQFDAALDNA--NSADyve 745
CS HHHHHH
.....dlqeql<-*
++ +dl++++
gi|1583378 746 vnsydDLADDM 756
DUF1194: domain 1 of 1, from 580 to 596: score 1.5, E = 3.7
*->VDVSgSvDaaEyrlQRe<-*
+D SgSv+ E rlQR+
gi|1583378 580 LDKSGSVSLSERRLQRD 596
Phage_sheath_1: domain 1 of 1, from 627 to 650: score -1.1, E = 6.8
*->iditPvpPlEyitFrfviTstylvd<-*
i++t+v ++ +tF++++++ y +
gi|1583378 627 IGYTDVTAANLPTFESALNTNYV-N 650
Calici_MSP: domain 1 of 1, from 661 to 677: score 0.9, E = 5.5
*->gstpavnlGhnPgsSsv<-*
g++ a+ lG +Pgs+ v
gi|1583378 661 GFQQAISLGVSPGSPDV 677
Nrf1_DNA-bind: domain 1 of 1, from 663 to 679: score 0.4, E = 5.5
*->qqAvvLvvtPgKpnpvF<-*
qqA+ L v+Pg p+ vF
gi|1583378 663 QQAISLGVSPGSPDVVF 679
Radical_SAM: domain 1 of 1, from 699 to 743: score 1.3, E = 7.6
CS HHHCT--EEEEEEES-HHH.HHHHHT-SS-HHHHHHHHHHHHHCC-
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
*->LkeagldrvsislesgddekvlkiinrkhtfeevlealellreaGi<
+k ag ++i+++s+d +++l+i+ + + ++ +al+++ a +
gi|1583378 699 FKQAGAHIYGIGIQSLDIDDFLDIT-DGSNTTQFDAALDNANSADY 743
CS
RF
-*
gi|1583378 - -
TIM: domain 1 of 1, from 713 to 723: score 0.5, E = 6.6
CS GGSCTCHHHHH
*->SLkaesFlaIi<-*
SL++++Fl+I
gi|1583378 713 SLDIDDFLDIT 723
NPCBM_assoc: domain 1 of 1, from 838 to 863: score 2.1, E = 7.3
*->vvaGrtvtvtatftndgttaatgVsv<-*
+ +G++v++t f ++gt +a gV +
gi|1583378 838 TRPGDEVEYTIYFLSTGTSTAVGVQF 863
DUF11: domain 1 of 1, from 839 to 877: score 14.7, E = 0.0039
*->rpGdtvtYTiTVtNtGpdtpArnVvVtDtLddtPaGltyvsgs<-*
rpGd+v+YTi + tG+ t A +V+ +D + P+ t+v++
gi|1583378 839 RPGDEVEYTIYFLSTGTST-AVGVQFCDKV---PSFQTFVPDA 877
ARS2: domain 1 of 1, from 882 to 913: score 1.2, E = 3.3
*->PpnqygGGrGGaGRgnydefRgqlvgyGkPrnrdldgP<-*
Pp+++gG Ga Rg e+ g l + + d dg+
gi|1583378 882 PPAPSGG--VGANRGIAVEYNGSLLSF----TNDADGD 913
MCR_gamma: domain 1 of 1, from 915 to 923: score 0.7, E = 5.3
CS ---- -SSC
*->aQfy.PGeT<-*
aQ+y+PG+T
gi|1583378 915 AQYYpPGST 923
Peptidase_A21: domain 1 of 1, from 956 to 966: score 3.1, E = 0.19
*->TpASsyGpVrF<-*
TpA+syG+VrF
gi|1583378 956 TPATSYGAVRF 966
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