hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 158341333.fa
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Query sequence: gi|158341333|ref|YP_001522498.1|
Accession: [none]
Description: hemagglutination activity domain-containing protein [Acaryochloris marina MBIC11017]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Haemagg_act haemagglutination activity domain 124.4 1.1e-35 1
Big_1 Bacterial Ig-like domain (group 1) 42.8 3e-13 2
Chlam_PMP Chlamydia polymorphic membrane protei 34.1 5.4e-08 5
Fil_haemagg Haemagluttinin repeat 9.9 0.04 3
DUF2050 Putative pre-mRNA-splicing factor (DU 6.3 0.15 1
DUF824 Salmonella repeat of unknown function 8.2 0.31 2
Peptidase_A4 Peptidase A4 family 2.5 0.81 1
Citrate_ly_lig Citrate lyase ligase C-terminal domai 3.4 1.2 2
Peptidase_M15 D-ala-D-ala dipeptidase 3.5 1.2 1
Ribul_P_3_epim Ribulose-phosphate 3 epimerase family 3.0 1.2 2
FliD_N Flagellar hook-associated protein 2 C 5.5 1.3 1
HlyD HlyD family secretion protein 3.8 1.3 1
HtaA Htaa 2.7 1.4 1
Es2 Nuclear protein Es2 1.2 1.7 1
THAP THAP domain 3.3 1.9 1
NODP NOTCH protein 4.5 1.9 1
X_fast-SP_rel Xylella fastidiosa surface protein re 3.3 2 2
DUF1323 Protein of unknown function (DUF1323) 3.4 2.2 1
DUF823 Salmonella repeat of unknown function 1.5 2.4 1
PdxA Pyridoxal phosphate biosynthetic prot 2.1 2.7 1
Glyco_hydro_38C Glycosyl hydrolases family 38 C-termi 0.2 3.3 1
PKD PKD domain 2.2 3.8 1
Staphylcoagulse Staphylocoagulase repeat 3.8 3.9 1
DUF2271 Predicted periplasmic protein (DUF227 1.7 4.6 1
Cupin_1 Cupin 1.8 5.1 1
MucBP MucBP domain 2.7 5.6 1
DUF2491 Protein of unknown function (DUF2491) 0.5 5.7 1
Glucodextran_B Glucodextranase, domain B 1.9 6.2 1
MgtE Divalent cation transporter 2.1 6.5 1
Jun Jun-like transcription factor -1.0 8 1
SEFIR SEFIR domain 0.5 9.6 1
Peptidase_C37 Southampton virus-type processing pep -2.9 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Haemagg_act 1/1 6 125 .. 1 139 [] 124.4 1.1e-35
DUF1323 1/1 52 76 .. 98 122 .] 3.4 2.2
DUF2050 1/1 121 134 .. 143 156 .] 6.3 0.15
Cupin_1 1/1 149 179 .. 1 39 [. 1.8 5.1
HlyD 1/1 234 269 .. 283 321 .] 3.8 1.3
Glyco_hydro_38C 1/1 305 351 .. 1 43 [. 0.2 3.3
Peptidase_M15 1/1 316 331 .. 1 16 [. 3.5 1.2
MgtE 1/1 473 489 .. 123 140 .] 2.1 6.5
PdxA 1/1 490 502 .. 298 310 .] 2.1 2.7
Glucodextran_B 1/1 533 555 .. 1 26 [. 1.9 6.2
Chlam_PMP 1/5 573 596 .. 1 19 [] 2.4 23
Fil_haemagg 1/3 573 603 .. 49 75 .] 5.7 0.66
Chlam_PMP 2/5 603 620 .. 1 18 [. 10.7 0.13
Chlam_PMP 3/5 634 652 .. 1 19 [] 9.5 0.27
Chlam_PMP 4/5 668 685 .. 1 19 [] 4.3 6.9
Chlam_PMP 5/5 699 717 .. 1 19 [] 7.2 1.2
Peptidase_C37 1/1 703 709 .. 613 619 .] -2.9 9.8
PKD 1/1 918 936 .. 1 33 [. 2.2 3.8
MucBP 1/1 925 947 .. 81 108 .] 2.7 5.6
Es2 1/1 941 986 .. 452 491 .] 1.2 1.7
Ribul_P_3_epim 1/2 966 975 .. 201 210 .] 1.5 3.4
X_fast-SP_rel 1/2 997 1028 .. 39 70 .] 1.2 7.8
Big_1 1/2 1007 1075 .. 20 90 .. 19.0 1.2e-05
DUF2271 1/1 1010 1021 .. 1 12 [. 1.7 4.6
Fil_haemagg 2/3 1011 1104 .. 1 70 [. 2.5 5.3
DUF824 1/2 1015 1032 .. 16 33 .. 4.1 4.1
Citrate_ly_lig 1/2 1026 1036 .. 180 190 .] 1.7 3.6
FliD_N 1/1 1037 1075 .. 59 97 .. 5.5 1.3
DUF823 1/1 1051 1062 .. 1 12 [. 1.5 2.4
Peptidase_A4 1/1 1058 1073 .. 212 228 .] 2.5 0.81
Ribul_P_3_epim 2/2 1068 1077 .. 201 210 .] 1.5 3.4
SEFIR 1/1 1075 1100 .. 130 156 .. 0.5 9.6
HtaA 1/1 1080 1090 .. 186 196 .] 2.7 1.4
X_fast-SP_rel 2/2 1099 1130 .. 39 70 .] 2.0 4.5
Big_1 2/2 1109 1179 .. 20 92 .. 23.7 3.6e-07
Fil_haemagg 3/3 1113 1178 .. 1 75 [] 1.7 9.5
DUF824 2/2 1117 1134 .. 16 33 .. 4.1 4.1
Citrate_ly_lig 2/2 1128 1138 .. 180 190 .] 1.7 3.6
Staphylcoagulse 1/1 1139 1165 .. 1 27 [] 3.8 3.9
DUF2491 1/1 1176 1190 .. 227 241 .] 0.5 5.7
THAP 1/1 1225 1238 .. 81 94 .] 3.3 1.9
NODP 1/1 1232 1253 .. 44 66 .] 4.5 1.9
Jun 1/1 1240 1248 .. 293 303 .] -1.0 8
Alignments of top-scoring domains:
Haemagg_act: domain 1 of 1, from 6 to 125: score 124.4, E = 1.1e-35
CS X---EE-TT-EEE-...-TTS--EEE-----TTSEEEEEEEE--B-T
*->aqslpdgglvtngtvtiqatgvpitggtipqtsgnlfisfssFnVgq
aqs+ ++ +t+++vt ++ + i gg+ + ++ nlf+sf++F +q
gi|1583413 6 AQSIVTEPNGTQTIVTADGKRFNISGGSLSGDGANLFHSFKKFGLSQ 52
CS TEEEEEE-SSEEETTTEEE---TT-.SS--SEEEEEE-SS--EEEEEEEE
ggtvlFnatqgqSqLgGnltgNpnLapgaasnIlNRVTGgnaSqIqGlle
g+ ++F + ++ ++nIl RV Gg+aS+I+G ++
gi|1583413 53 GEIATFL--S----------------NPGIQNILGRVNGGDASIINGMIQ 84
CS EEE.S-EEEEEE-TT-EEEEEEEEESEEEEEEE-SEEEEETT
vlGganAnVfLaNPNGIifgggAfiNvgglfvtTgaisikff<-*
v+G +nAn++L+NP+GI+fg++A+iNv+ f +T+a+ i f+
gi|1583413 85 VQG-SNANLYLMNPAGIVFGPNATINVPADFRATTADGIGFE 125
DUF1323: domain 1 of 1, from 52 to 76: score 3.4, E = 2.2
*->QeklaslLsREGIrglLqRLgIres<-*
Q +a +Ls GI ++L R ++
gi|1583413 52 QGEIATFLSNPGIQNILGRVNGGDA 76
DUF2050: domain 1 of 1, from 121 to 134: score 6.3, E = 0.15
*->SNGFEkkwFekqne<-*
+ GFEk wF++ ++
gi|1583413 121 GIGFEKGWFNAVGD 134
Cupin_1: domain 1 of 1, from 149 to 179: score 1.8, E = 5.1
CS EECCCSSC...SEEEETTEEEEEECTTTCTGCCHHHTTE
*->fnllepspgfADvynsegGrlttansnnlPkglltlggs<-*
fn+++p+ ++n +G l +a +nl+ l + ++
gi|1583413 149 FNTDQPGS----IVN--AGHLAVAKGQNLS--LIGGTVV 179
HlyD: domain 1 of 1, from 234 to 269: score 3.8, E = 1.3
CS ---------------------------------------
*->vavvnidkvvqglpVeigldpGafnqsttplvpGevviv<-*
++++ ++v+ g++V+++ ++ tp+v G+v+i+
gi|1583413 234 LLTGGDIPVATGVEVDAEGR---TWLLNTPVVNGDVAIA 269
Glyco_hydro_38C: domain 1 of 1, from 305 to 351: score 0.2, E = 3.3
CS EEEEEEE-SSS-EEEEEEEEES-S-EEE ETT.. .. . .......
*->epvvvfNpLawtrnevVripvsspnvsv.desge.it.e.ailaeed
v+ fN + + ne+V ++ p + + +e +t+ ai++ e+
gi|1583413 305 PIVTRFNADGTNANELVFLDTTVPDYQRlLFGTEaGTtTvAIPVSEN 351
CS
<-*
gi|1583413 - -
Peptidase_M15: domain 1 of 1, from 316 to 331: score 3.5, E = 1.2
CS --TTEEEGGGTSTT-E
*->kelglvdlaevvpDvr<-*
+++lv+l+ vpD++
gi|1583413 316 NANELVFLDTTVPDYQ 331
MgtE: domain 1 of 1, from 473 to 489: score 2.1, E = 6.5
*->ITTlaDittlliyyllia<-*
+TTlaD t+ll + ++ +
gi|1583413 473 ATTLADYTGLLQV-FTAT 489
PdxA: domain 1 of 1, from 490 to 502: score 2.1, E = 2.7
CS -THHHHHHHHHHH
*->dpgSliaAlklAa<-*
d+ SliaA+++A
gi|1583413 490 DAASLIAAINTAN 502
Glucodextran_B: domain 1 of 1, from 533 to 555: score 1.9, E = 6.2
CS --EEEEES-SEEE-SSSEEEEEEEE-
*->PeLsvtaPeaLstADsAtavvrGtta<-*
s+taPe+L+ ++ r tta
gi|1583413 533 ---SITAPEKLTINGMGNTLARDTTA 555
Chlam_PMP: domain 1 of 5, from 573 to 596: score 2.4, E = 23
*->ditFsgNsa.....aggGGAiyas<-*
dit++g +a++++++ +GGAi+++
gi|1583413 573 DITLTGGIAnsggqGDDGGAIHNR 596
Fil_haemagg: domain 1 of 3, from 573 to 603: score 5.7, E = 0.66
CS ............. .EEEEESS-EEEEE
*->dlllaagalrngg....dltltaaGdLdnsg<-*
d++l++g++++gg+++++++++++G+L++++
gi|1583413 573 DITLTGGIANSGGqgddGGAIHNRGTLTVNN 603
Chlam_PMP: domain 2 of 5, from 603 to 620: score 10.7, E = 0.13
*->ditFsgNsaaggGGAiya<-*
+++++gN+aa +GGAi++
gi|1583413 603 NSIITGNTAADDGGAISS 620
Chlam_PMP: domain 3 of 5, from 634 to 652: score 9.5, E = 0.27
*->ditFsgNsaaggGGAiyas<-*
++t+sgN+a g+GGA++++
gi|1583413 634 NSTLSGNTAMGNGGALSNT 652
Chlam_PMP: domain 4 of 5, from 668 to 685: score 4.3, E = 6.9
*->ditFsgNsaaggGGAiyas<-*
++t++gN a + GG+i
gi|1583413 668 NSTITGNNA-NVGGGIAQL 685
Chlam_PMP: domain 5 of 5, from 699 to 717: score 7.2, E = 1.2
*->ditFsgNsaaggGGAiyas<-*
++t+sgN++ gGG+iy++
gi|1583413 699 NSTISGNTVVFGGGGIYNR 717
Peptidase_C37: domain 1 of 1, from 703 to 709: score -2.9, E = 9.8
*->SGNTVIC<-*
SGNTV+
gi|1583413 703 SGNTVVF 709
PKD: domain 1 of 1, from 918 to 936: score 2.2, E = 3.8
CS EESS.....SSSEBTTEEEEEEECT.B.TT.SS
*->vsasaveegpsvvalgetVtFtassSydpdpGs<-*
+++s g++VtFta+ +p+ G+
gi|1583413 918 LPVS-----------GLNVTFTATP--SPT-GA 936
MucBP: domain 1 of 1, from 925 to 947: score 2.7, E = 5.6
*->VvgqvTptlkdt.lpvnvtYtfngtiqtV<-*
V t ++t++p+ +t+ fng++ t
gi|1583413 925 V------TFTATpSPTGATGSFNGNPTTT 947
Es2: domain 1 of 1, from 941 to 986: score 1.2, E = 1.7
*->akrnlksPvgrtprfsssprlafGsrTPgaa.......k.LtPAAqr
+++++++ v+++ + ++ p l + T +++ ++++++LtPA +
gi|1583413 941 NGNPTTTVVTNATGVATAPTLT--ANTVAGSyvissssGtLTPASFN 985
L<-*
L
gi|1583413 986 L 986
Ribul_P_3_epim: domain 1 of 2, from 966 to 975: score 1.5, E = 3.4
CS ECCHHHCTSS
*->VaGSAvFgap<-*
VaGS+v++++
gi|1583413 966 VAGSYVISSS 975
X_fast-SP_rel: domain 1 of 2, from 997 to 1028: score 1.2, E = 7.8
*->tYsGGnLKsvvDEAAGaiHLqLADsPKFGnvl<-*
t sGGn +s A a L + +FGn +
gi|1583413 997 TISGGNDQSTTVNTAFADTLDVTVTDQFGNLV 1028
Big_1: domain 1 of 2, from 1007 to 1075: score 19.0, E = 1.2e-05
CS ESSSS--EEEEEEEEETTTEE-TT-EEEE.....EESSSEES-S.E.
*->vAngndaiTlTAtVkDanGnPVagqeVtFtvpsdvsssgtlsngntk
++n++ a Tl +tV+D++Gn+V++ + + + p+ +++s tls++ t
gi|1583413 1007 TVNTAFADTLDVTVTDQFGNLVPNTTLNYSAPN-TGASSTLSAT-T- 1050
CS EEE-TTSEEEEEEE-S S-EEEEEE
atTdanGkAtvtLTst.kaGtytVt<-*
atTd+nG+A+v+ T+++ aG+y+++
gi|1583413 1051 ATTDSNGVASVSATGNtVAGSYVIS 1075
DUF2271: domain 1 of 1, from 1010 to 1021: score 1.7, E = 4.6
*->pahAaelnieve<-*
a+A++l+++v+
gi|1583413 1010 TAFADTLDVTVT 1021
Fil_haemagg: domain 2 of 3, from 1011 to 1104: score 2.5, E = 5.3
CS EEESSEEEETT TT--EE-SEEEEEE-ST
*->vaaGaltlnaa...................alggldlnnggtlsagg
+ a +l+++++++ ++ ++++ + + ++++++++ +++++t +++g
gi|1583413 1011 AFADTLDVTVTdqfgnlvpnttlnysapntGASSTLSATTATTDSNG 1057
CS T-EEEE-S-EEESSE.................. .EEEEESS-
gltltaagllnnggtliaggdlllaagalrngg.....dltltaaGd<-*
+++a+g +g i+++ +la +++ +++++ ++l +++G+
gi|1583413 1058 VASVSATGNTVAGSYVISSSSGTLAPVSFNLTNtpdvpALLTISGGN 1104
DUF824: domain 1 of 2, from 1015 to 1032: score 4.1, E = 4.1
*->pltVTvKDaaGnPvpnvp<-*
+l VTv+D Gn vpn++
gi|1583413 1015 TLDVTVTDQFGNLVPNTT 1032
Citrate_ly_lig: domain 1 of 2, from 1026 to 1036: score 1.7, E = 3.6
*->kLVPaTTlqYL<-*
+LVP TTl+Y
gi|1583413 1026 NLVPNTTLNYS 1036
FliD_N: domain 1 of 1, from 1037 to 1075: score 5.5, E = 1.3
*->a.ysdtssafanskkatsSdssavsvtatsgAsaGsysik<-*
a++++ ss++ ++++at+++++++sv+at++ +aGsy i+
gi|1583413 1037 ApNTGASSTL-SATTATTDSNGVASVSATGNTVAGSYVIS 1075
DUF823: domain 1 of 1, from 1051 to 1062: score 1.5, E = 2.4
*->GvTgAdGtatft<-*
++T+++G a+++
gi|1583413 1051 ATTDSNGVASVS 1062
Peptidase_A4: domain 1 of 1, from 1058 to 1073: score 2.5, E = 0.81
CS -EEEEEETTE.EEEEE-
*->LTecSVSGtTtVTveYV<-*
+ ++S +G T V +YV
gi|1583413 1058 VASVSATGNT-VAGSYV 1073
Ribul_P_3_epim: domain 2 of 2, from 1068 to 1077: score 1.5, E = 3.4
CS ECCHHHCTSS
*->VaGSAvFgap<-*
VaGS+v++++
gi|1583413 1068 VAGSYVISSS 1077
SEFIR: domain 1 of 1, from 1075 to 1100: score 0.5, E = 9.6
*->sealrkyivvyFsgyskkkdvPtpLri<-*
s++ ++ ++v F ++++++dvP++L+i
gi|1583413 1075 SSSSGTLAPVSF-NLTNTPDVPALLTI 1100
HtaA: domain 1 of 1, from 1080 to 1090: score 2.7, E = 1.4
*->aLDPvslsltl<-*
+L+Pvs++lt+
gi|1583413 1080 TLAPVSFNLTN 1090
X_fast-SP_rel: domain 2 of 2, from 1099 to 1130: score 2.0, E = 4.5
*->tYsGGnLKsvvDEAAGaiHLqLADsPKFGnvl<-*
t sGGn +s A a L + +FGn +
gi|1583413 1099 TISGGNNQSTTVNTAFANTLDVTVTDQFGNLV 1130
Big_1: domain 2 of 2, from 1109 to 1179: score 23.7, E = 3.6e-07
CS ESSSS--EEEEEEEEETTTEE-TT-EEEE.....EESSSEES-S.E.
*->vAngndaiTlTAtVkDanGnPVagqeVtFtvpsdvsssgtlsngntk
++n++ a+Tl +tV+D++Gn+V++ + + + ps +++s tls++ t
gi|1583413 1109 TVNTAFANTLDVTVTDQFGNLVPNTTLNYSAPS-TGASSTLSAT-T- 1152
CS EEE-TTSEEEEEEE-S S-EEEEEEEE
atTdanGkAtvtLTst.kaGtytVtAs<-*
+tTd+nG+A+v+ T +++aGt tVtA+
gi|1583413 1153 VTTDNNGVASVSATANdTAGTFTVTAT 1179
Fil_haemagg: domain 3 of 3, from 1113 to 1178: score 1.7, E = 9.5
CS EEESSEEEETT TT--EE-SEEEEEE-STT-EEEE-S-EEESSE
*->vaaGaltlnaa....alggldlnnggtlsagggltltaagllnnggt
+ a++l+++++++ ++l ++ n + s+g+ tl+a+ + ++ ++
gi|1583413 1113 AFANTLDVTVTdqfgNLVPNTTLNYSAPSTGASSTLSATTVTTDNNG 1159
CS ...................EEEEESS-EEEEE
liaggdlllaagalrnggdltltaaGdLdnsg<-*
++ ++ ++ ++aG++++++
gi|1583413 1160 VASVSA-------------TANDTAGTFTVTA 1178
DUF824: domain 2 of 2, from 1117 to 1134: score 4.1, E = 4.1
*->pltVTvKDaaGnPvpnvp<-*
+l VTv+D Gn vpn++
gi|1583413 1117 TLDVTVTDQFGNLVPNTT 1134
Citrate_ly_lig: domain 2 of 2, from 1128 to 1138: score 1.7, E = 3.6
*->kLVPaTTlqYL<-*
+LVP TTl+Y
gi|1583413 1128 NLVPNTTLNYS 1138
Staphylcoagulse: domain 1 of 1, from 1139 to 1165: score 3.8, E = 3.9
*->rptynkpsetnAYnvtthadGtvsYGa<-*
p +s A vtt+++G +s a
gi|1583413 1139 APSTGASSTLSATTVTTDNNGVASVSA 1165
DUF2491: domain 1 of 1, from 1176 to 1190: score 0.5, E = 5.7
*->stslGidLeptDfrv<-*
+t++G++++ ++f+
gi|1583413 1176 VTATGVGVTAGNFTL 1190
THAP: domain 1 of 1, from 1225 to 1238: score 3.3, E = 1.9
*->pgAVPTlflghddl<-*
+gAVPT++l+ d
gi|1583413 1225 CGAVPTVNLEVDID 1238
NODP: domain 1 of 1, from 1232 to 1253: score 4.5, E = 1.9
*->gLdslpypIesVtSepdepstpe<-*
+L +++++I++V++++++p + +
gi|1583413 1232 NL-EVDIDIPDVQGQTPPPEESQ 1253
Jun: domain 1 of 1, from 1240 to 1248: score -1.0, E = 8
*->PevpSfGeSPP<-*
P+v G +PP
gi|1583413 1240 PDVQ--GQTPP 1248
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