hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            159026164.fa
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Query sequence: gi|159026164|emb|CAO88814.1|
Accession:      [none]
Description:    unnamed protein product [Microcystis aeruginosa PCC 7806]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Dynactin_p22    Dynactin subunit p22                      4.6       0.71   1
DNA_III_psi     DNA polymerase III psi subunit            3.7        1.6   1
TNV_CP          Satellite tobacco necrosis virus coat     1.3        3.4   1
ROF             Modulator of Rho-dependent transcript     2.8        4.6   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
TNV_CP            1/1      38    48 ..   194   204 .]     1.3      3.4
Dynactin_p22      1/1      48    60 ..     1    14 [.     4.6     0.71
DNA_III_psi       1/1      69    90 ..    92   113 .]     3.7      1.6
ROF               1/1      77    94 ..    67    86 .]     2.8      4.6

Alignments of top-scoring domains:
TNV_CP: domain 1 of 1, from 38 to 48: score 1.3, E = 3.4
                CS    EEEEEEEEE--
                   *->dlgvelvYtDa<-*
                      +l++ +v++Da
  gi|1590261    38    RLTATVVFLDA    48

Dynactin_p22: domain 1 of 1, from 48 to 60: score 4.6, E = 0.71
                   *->MAGLTDLQRLQARV<-*
                       AG TD Q LQA V
  gi|1590261    48    -AGVTDYQSLQAGV    60

DNA_III_psi: domain 1 of 1, from 69 to 90: score 3.7, E = 1.6
                CS    ES.....--S..--SSBS-EEE
                   *->LgdNsdeidrldPlskqAqqvl<-*
                      L+ N+d i+ ++++ +q  q+
  gi|1590261    69    LSPNQDGIEQISAFLQQNPQIT    90

ROF: domain 1 of 1, from 77 to 94: score 2.8, E = 4.6
                   *->DqilamtALtenPhFgrvvf<-*
                      +qi+a+   + nP ++++++
  gi|1590261    77    EQISAFL--QQNPQITTIHL    94

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