hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 159466140.fa
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Query sequence: gi|159466140|ref|XP_001691267.1|
Accession: [none]
Description: hypothetical protein CHLREDRAFT_170120 [Chlamydomonas reinhardtii]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
efhand EF hand 24.1 2e-05 3
DUF2201 Predicted metallopeptidase (DUF2201) 7.1 0.048 1
Pyridox_oxidase Pyridoxamine 5'-phosphate oxidase 6.4 0.28 1
RTX RTX N-terminal domain 1.2 0.68 1
DUF1007 Protein of unknown function (DUF1007) 4.2 0.95 1
PV-1 PV-1 protein (PLVAP) 1.2 1.3 1
Ribophorin_I Ribophorin I 2.7 1.3 1
Lpp-LpqN Probable lipoprotein LpqN 2.2 2 1
FCD FCD domain 2.8 2.1 1
DUF637 Possible hemagglutinin (DUF637) 3.7 2.5 1
ATP-synt_B ATP synthase B/B' CF(0) 3.3 2.9 1
Med19 Mediator of RNA pol II transcription 2.6 3.6 1
ImpE ImpE protein 2.0 3.6 1
DPPF Uncharacterized conserved protein (DP 2.0 3.6 1
TGF_beta_GS Transforming growth factor beta type 3.1 3.9 1
APOBEC_N APOBEC-like N-terminal domain 2.7 4.3 1
DUF1909 Domain of unknown function (DUF1909) 1.1 4.8 1
DUF2105 Predicted membrane protein (DUF2105) 1.2 4.9 1
Pertus-S5-tox Pertussis toxin S5 subunit 0.6 5.1 1
Lysyl_oxidase Lysyl oxidase 1.3 5.4 1
Hydrophobin Fungal hydrophobin 1.3 5.6 1
DUF230 Poxvirus proteins of unknown function 2.4 5.6 1
DUF370 Domain of unknown function (DUF370) 1.7 6.3 1
PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase 1.2 6.7 1
FeoB_N Ferrous iron transport protein B 0.9 6.8 1
Prim-Pol Bifunctional DNA primase/polymerase, 1.1 6.9 1
Pea-VEAacid Pea-VEAacid family 3.1 7.2 1
Amino_oxidase Flavin containing amine oxidoreductas -0.3 7.5 1
DUF959 Domain of Unknown Function (DUF959) 1.0 7.6 1
NPDC1 Neural proliferation differentiation -0.4 7.6 1
Hist_deacetyl Histone deacetylase domain -0.5 8.9 1
ApoO Apolipoprotein O 0.6 9 1
Flexi_CP Viral coat protein 1.0 9.1 1
RNase_PH 3' exoribonuclease family, domain 1 0.8 9.2 1
DUF1967 Domain of unknown function (DUF1967) 1.9 9.4 1
LRV Leucine rich repeat variant 3.6 9.7 1
MtrG Tetrahydromethanopterin S-methyltrans 1.6 9.9 1
TPD52 Tumour protein D52 family 0.3 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF2105 1/1 15 35 .. 1 21 [. 1.2 4.9
ATP-synt_B 1/1 20 39 .. 1 20 [. 3.3 2.9
Ribophorin_I 1/1 28 46 .. 451 469 .] 2.7 1.3
MtrG 1/1 30 44 .. 55 72 .] 1.6 9.9
APOBEC_N 1/1 134 158 .. 1 24 [. 2.7 4.3
Pertus-S5-tox 1/1 184 195 .. 1 13 [. 0.6 5.1
Lpp-LpqN 1/1 240 254 .. 1 16 [. 2.2 2
DPPF 1/1 241 246 .. 1 6 [. 2.0 3.6
Lysyl_oxidase 1/1 260 274 .. 192 206 .] 1.3 5.4
DUF959 1/1 266 281 .. 1 16 [. 1.0 7.6
efhand 1/3 439 467 .. 1 29 [] 14.2 0.01
RNase_PH 1/1 462 469 .. 149 156 .] 0.8 9.2
efhand 2/3 487 504 .. 12 29 .] 0.6 51
DUF1967 1/1 505 514 .. 60 69 .] 1.9 9.4
DUF1007 1/1 510 530 .. 61 81 .. 4.2 0.95
efhand 3/3 511 532 .. 8 29 .] 9.3 0.22
DUF230 1/1 543 557 .. 1 18 [. 2.4 5.6
DUF1909 1/1 553 561 .. 65 74 .] 1.1 4.8
DUF370 1/1 580 586 .. 67 73 .] 1.7 6.3
TPD52 1/1 645 664 .. 175 194 .] 0.3 10
Pyridox_oxidase 1/1 664 695 .. 1 32 [. 6.4 0.28
NPDC1 1/1 706 718 .. 1 14 [. -0.4 7.6
TGF_beta_GS 1/1 772 794 .. 1 23 [. 3.1 3.9
DUF2201 1/1 774 820 .. 178 221 .. 7.1 0.048
Hist_deacetyl 1/1 805 823 .. 1 19 [. -0.5 8.9
ApoO 1/1 816 841 .. 1 28 [. 0.6 9
DUF637 1/1 854 871 .. 1 17 [. 3.7 2.5
RTX 1/1 871 905 .. 1 35 [. 1.2 0.68
LRV 1/1 880 898 .. 1 19 [. 3.6 9.7
FeoB_N 1/1 892 919 .. 190 220 .] 0.9 6.8
PI3_PI4_kinase 1/1 943 960 .. 308 325 .] 1.2 6.7
ImpE 1/1 972 989 .. 1 18 [. 2.0 3.6
Hydrophobin 1/1 1020 1049 .. 1 48 [. 1.3 5.6
FCD 1/1 1095 1112 .. 107 124 .] 2.8 2.1
Amino_oxidase 1/1 1143 1154 .. 471 482 .] -0.3 7.5
Pea-VEAacid 1/1 1222 1235 .. 1 15 [] 3.1 7.2
PV-1 1/1 1234 1249 .. 427 442 .] 1.2 1.3
Prim-Pol 1/1 1344 1405 .. 1 85 [. 1.1 6.9
Flexi_CP 1/1 1380 1386 .. 135 141 .] 1.0 9.1
Med19 1/1 1450 1457 .. 178 185 .] 2.6 3.6
Alignments of top-scoring domains:
DUF2105: domain 1 of 1, from 15 to 35: score 1.2, E = 4.9
*->meityslylvavlvGliiGfI<-*
+ + l+ v ++v++++G+I
gi|1594661 15 PLDNATLFWVIIAVSIVVGLI 35
ATP-synt_B: domain 1 of 1, from 20 to 39: score 3.3, E = 2.9
*->tLetnlInfliLvglLiyfg<-*
tL++++I+ i+vgl+i +
gi|1594661 20 TLFWVIIAVSIVVGLIILAV 39
Ribophorin_I: domain 1 of 1, from 28 to 46: score 2.7, E = 1.3
*->llitagfFllFvavivyvr<-*
++i+ g+++l+v+++++v+
gi|1594661 28 VSIVVGLIILAVVIWAIVT 46
MtrG: domain 1 of 1, from 30 to 44: score 1.6, E = 9.9
*->lVIGLiLslIlavlsvlF<-*
+V+GLi Ilav++ ++
gi|1594661 30 IVVGLI---ILAVVIWAI 44
APOBEC_N: domain 1 of 1, from 134 to 158: score 2.7, E = 4.3
*->aRispeeFkfqFkNveyls.cYYgR<-*
a+++p +F F N++ +s++ Y R
gi|1594661 134 APVTPPTFNALFSNPRLASePPYER 158
Pertus-S5-tox: domain 1 of 1, from 184 to 195: score 0.6, E = 5.1
CS --EEEEEEEEEEE
*->PtHLYKnFtvqEL<-*
+KnFt qEL
gi|1594661 184 -AYDWKNFTLQEL 195
Lpp-LpqN: domain 1 of 1, from 240 to 254: score 2.2, E = 2
*->MteiartWRvlaGgva<-*
te + WRvlaG+va
gi|1594661 240 -TELSQFWRVLAGCVA 254
DPPF: domain 1 of 1, from 241 to 246: score 2.0, E = 3.6
*->qLSQFW<-*
+LSQFW
gi|1594661 241 ELSQFW 246
Lysyl_oxidase: domain 1 of 1, from 260 to 274: score 1.3, E = 5.4
*->dGhrvyasnChigda<-*
dG+r+ +C+ ++a
gi|1594661 260 DGRRIDLLGCRLVEA 274
DUF959: domain 1 of 1, from 266 to 281: score 1.0, E = 7.6
*->LlecrLtsAdaetasL<-*
Ll crL+ A e+a L
gi|1594661 266 LLGCRLVEAPREGAAL 281
efhand: domain 1 of 3, from 439 to 467: score 14.2, E = 0.01
CS HHHHHHHHHTTTSSSEEHHHHHHHHHHHH
*->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
++aF e Dk+ +G +s +E+ a++ +
gi|1594661 439 TPDAAFTEGDKNANGSLSTDELTALMLAH 467
RNase_PH: domain 1 of 1, from 462 to 469: score 0.8, E = 9.2
CS HHHHCCHH
*->ALadAgiP<-*
AL++A++P
gi|1594661 462 ALMLAHVP 469
efhand: domain 2 of 3, from 487 to 504: score 0.6, E = 51
CS TSSSEEHHHHHHHHHHHH
*->DgDGkIsfeEfkaalkkl<-*
+ DG +s+ Ef+ +l +
gi|1594661 487 NEDGVLSRSEFVLGLPEN 504
DUF1967: domain 1 of 1, from 505 to 514: score 1.9, E = 9.4
*->VrIgdfEFef<-*
VrI d EF+
gi|1594661 505 VRIQDLEFDA 514
DUF1007: domain 1 of 1, from 510 to 530: score 4.2, E = 0.95
*->yDfdknsDlklDkkElqelae<-*
++fd n+++ lD+ Elq+l +
gi|1594661 510 LEFDANANGELDHRELQQLIA 530
efhand: domain 3 of 3, from 511 to 532: score 9.3, E = 0.22
CS HHTTTSSSEEHHHHHHHHHHHH
*->efDkDgDGkIsfeEfkaalkkl<-*
efD++ +G+++ E++++++ +
gi|1594661 511 EFDANANGELDHRELQQLIACI 532
DUF230: domain 1 of 1, from 543 to 557: score 2.4, E = 5.6
*->IdnyCdaqkddFKsrrCw<-*
I+++++ + ++ ++++
gi|1594661 543 ILAFLYHHDAN---KDMK 557
DUF1909: domain 1 of 1, from 553 to 561: score 1.1, E = 4.8
*->pKsdleeCFP<-*
+K+ +++C+P
gi|1594661 553 NKD-MKPCLP 561
DUF370: domain 1 of 1, from 580 to 586: score 1.7, E = 6.3
*->ETIaqRl<-*
ETIa Rl
gi|1594661 580 ETIARRL 586
TPD52: domain 1 of 1, from 645 to 664: score 0.3, E = 10
*->eaGstlfdevlssaagaSAt<-*
+a+s++ + v+ saa SA+
gi|1594661 645 PAASGSRGNVAASAAAQSAL 664
Pyridox_oxidase: domain 1 of 1, from 664 to 695: score 6.4, E = 0.28
CS HHHHHHHHHCSTSEEEEEEEETTS-EEEEEEE
*->lteeireflaepnagvLATvdadGrPnvspvg<-*
l ++++ ++++a+ LAT+++ +P +sp+g
gi|1594661 664 LGSAAAAAKSACPAASLATATRAQMPAASPTG 695
NPDC1: domain 1 of 1, from 706 to 718: score -0.4, E = 7.6
*->mAtPlPPPsPRHLR<-*
A PlP PsPR R
gi|1594661 706 -AAPLPTPSPRATR 718
TGF_beta_GS: domain 1 of 1, from 772 to 794: score 3.1, E = 3.9
*->keladlledtttSGSGSGlPlLv<-*
+ ++ ++d+ +SGSGSG +Lv
gi|1594661 772 QASSGEADDDGSSGSGSGSDTLV 794
DUF2201: domain 1 of 1, from 774 to 820: score 7.1, E = 0.048
*->kggEasadGsgGkgaaqdqsGgsqereskRq...DGprAarvralga
++gEa++dGs G+g +d + + +s R++++D++rAar+r+ +a
gi|1594661 774 SSGEADDDGSSGSGSGSDTLVVELSTASPRTspeDPARAARLRQGAA 820
<-*
gi|1594661 - -
Hist_deacetyl: domain 1 of 1, from 805 to 823: score -0.5, E = 8.9
CS THHHCHHHHHHHHCCHHTC
*->HPEspeRleaileaLeelG<-*
PE+p+R +++++ +++G
gi|1594661 805 SPEDPARAARLRQGAAAAG 823
ApoO: domain 1 of 1, from 816 to 841: score 0.6, E = 9
*->kvvklvavpAsLvfasvsvyaasdpkke<-*
+ ++++a++A+L++a++ +++ + ++e
gi|1594661 816 RQGAAAAGAAGLPAAAAATLPME--QDE 841
DUF637: domain 1 of 1, from 854 to 871: score 3.7, E = 2.5
*->AavAa.lsSlAsqAAVSt<-*
A++Aa+++++A+q +VSt
gi|1594661 854 AGDAAeVGAAAAQYVVST 871
RTX: domain 1 of 1, from 871 to 905: score 1.2, E = 0.68
*->tlaniKsqlkqglkstknklksagssaKeaLkkAg<-*
tla+++sql+++ ++++ + + ++ +++ +++
gi|1594661 871 TLASLSSQLDNLRALVASHPHTHVAQLGNSARATL 905
LRV: domain 1 of 1, from 880 to 898: score 3.6, E = 9.7
CS HHHHHHHHHH..S-GGGGG
*->peVRaaVArrPdlPpeaLe<-*
Ra VA++P++ + L+
gi|1594661 880 DNLRALVASHPHTHVAQLG 898
FeoB_N: domain 1 of 1, from 892 to 919: score 0.9, E = 6.8
*->ggfgalgefvgaplwfgPlLqSLLvdGiigG<-*
+ +++lg+++ a+l +g + LL+ G+ gG
gi|1594661 892 THVAQLGNSARATLVPG---SALLASGLTGG 919
PI3_PI4_kinase: domain 1 of 1, from 943 to 960: score 1.2, E = 6.7
CS .....HHHHHHSSS--TT
*->AvarGelmledglpdwrs<-*
A+ +G++++++gl++w+
gi|1594661 943 AAGAGLAAARSGLVRWPN 960
ImpE: domain 1 of 1, from 972 to 989: score 2.0, E = 3.6
CS HHTTTT-HHHHHHHHHHH
*->elLsegeLddAlqalieq<-*
+ L++ +L+++lqa+ +q
gi|1594661 972 DMLAAEALAQGLQAVPAQ 989
Hydrophobin: domain 1 of 1, from 1020 to 1049: score 1.3, E = 5.6
*->slaavAlAalAaAtPhdsgagnggnkgnttvkvatprspttttagsq
+aa+A++a AaAtP ++ + +++++ q
gi|1594661 1020 AAAATAAPAVAAATP------------------EAAAGAEGPQGAEQ 1048
C<-*
C
gi|1594661 1049 C 1049
FCD: domain 1 of 1, from 1095 to 1112: score 2.8, E = 2.1
*->ragDaeaAraamreHlea<-*
+ag++ A aa+r+Hl a
gi|1594661 1095 AAGNPTSADAAARSHLGA 1112
Amino_oxidase: domain 1 of 1, from 1143 to 1154: score -0.3, E = 7.5
CS HHHHHHHHHHHH
*->veSGlrAAaril<-*
++SG+ AA+r l
gi|1594661 1143 LLSGQAAAQRAL 1154
Pea-VEAacid: domain 1 of 1, from 1222 to 1235: score 3.1, E = 7.2
*->LdLtPGsHvDsYvEA<-*
dL Gs vD EA
gi|1594661 1222 -DLEDGSEVDEEAEA 1235
PV-1: domain 1 of 1, from 1234 to 1249: score 1.2, E = 1.3
*->EsqRlPvviPvAqssG<-*
E+qR ++i +A+ sG
gi|1594661 1234 EAQRRAAGITAARVSG 1249
Prim-Pol: domain 1 of 1, from 1344 to 1405: score 1.1, E = 6.9
CS HHHHHHTT---..EEE . .-TTT............SSBS.. STTG
*->AlryaknGwsVigfPl.r.kdpnggrCsCrgCpaPGKkPlkg.skgw
++++++G++ +++++ ++ l ++++g
gi|1594661 1344 GDWLQEHGLPL--TLFdHnSNSAK------------AIALAKnRQGS 1376
CS GG.........GGTS--HHHHHHHHHHHHHTT-E EEEESSG
kdeeeacgkhgysdatldpeeikrwwreihpgaN.iGiptGg<-*
+ ++++++e + + r +pg +++ +Gg
gi|1594661 1377 SK-----------SRKPTDAEPRGASR--EPGEQaVAVSGGG 1405
Flexi_CP: domain 1 of 1, from 1380 to 1386: score 1.0, E = 9.1
*->RrPTpaE<-*
R+PT+aE
gi|1594661 1380 RKPTDAE 1386
Med19: domain 1 of 1, from 1450 to 1457: score 2.6, E = 3.6
*->PehpGvgl<-*
P+hpG+g+
gi|1594661 1450 PAHPGMGF 1457
//