hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 162455742.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|162455742|ref|YP_001618109.1|
Accession: [none]
Description: Rhs family carbohydrate-binding protein [Sorangium cellulosum 'So ce 56']
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RHS_repeat RHS Repeat 225.5 1.4e-64 14
RHS RHS protein 21.6 3.8e-06 1
PIG-L GlcNAc-PI de-N-acetylase 4.5 0.59 1
Pox_N2L Poxvirus N2L protein 4.0 0.69 1
Oxidored_molyb Oxidoreductase molybdopterin binding 4.3 0.96 1
Glyco_transf_28 Glycosyltransferase family 28 N-termi 4.4 1 1
HYR HYR domain 4.4 1.1 1
DUF2203 Uncharacterized conserved protein (DU 3.7 1.3 1
KAR9 Yeast cortical protein KAR9 -0.4 2.3 1
MOSC_N MOSC N-terminal beta barrel domain 2.8 2.6 1
VanW VanW like protein 2.4 3.5 1
Glyoxalase Glyoxalase/Bleomycin resistance prote 2.1 3.5 1
Kunitz_BPTI Kunitz/Bovine pancreatic trypsin inhi 1.8 4 1
DUF765 Circovirus protein of unknown functio 2.3 4.1 1
DUF592 Protein of unknown function (DUF592) 0.1 4.3 1
DUF2313 Uncharacterized protein conserved in 1.2 4.5 1
Hormone_2 Peptide hormone 4.6 4.7 1
PB1 PB1 domain 2.7 5.1 1
Troponin Troponin 2.3 5.2 1
BA14K BA14K-like protein 3.5 5.4 1
DUF2394 Domain of unknown function (DUF2394) 2.7 5.4 1
Mycobact_memb Mycobacterium membrane protein 1.6 5.6 1
MCR_beta_N Methyl-coenzyme M reductase beta subu 1.2 5.6 1
PSP1 PSP1 C-terminal conserved region 1.7 5.8 1
Lys-AminoMut_A D-Lysine 5,6-aminomutase alpha subuni 0.1 5.8 1
B-block_TFIIIC B-block binding subunit of TFIIIC 0.2 5.9 1
DUF2584 Protein of unknown function (DUF2584) 1.5 6 1
DUF1336 Protein of unknown function (DUF1336) 0.6 6.7 1
DUF920 Bacterial protein of unknown function 1.1 7.4 1
PBP_dimer Penicillin-binding Protein dimerisati 1.1 7.4 1
WRC WRC 2.7 7.5 1
Tup_N Tup N-terminal 1.7 7.6 1
KR KR domain 0.7 8.1 1
MerR MerR family regulatory protein 3.2 8.1 1
MethyltransfD12 D12 class N6 adenine-specific DNA met 0.2 8.5 1
DUF1561 Protein of unknown function (DUF1561) -2.2 8.6 1
S_layer_N S-layer like family, N-terminal regio -0.1 9.6 1
Ribosomal_L14 Ribosomal protein L14p/L23e 1.2 9.8 1
efhand_Ca_insen Ca2+ insensitive EF hand 1.2 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Pox_N2L 1/1 46 75 .. 1 33 [. 4.0 0.69
MCR_beta_N 1/1 61 68 .. 175 182 .] 1.2 5.6
VanW 1/1 61 83 .. 121 143 .] 2.4 3.5
Mycobact_memb 1/1 97 102 .. 135 140 .] 1.6 5.6
KR 1/1 124 152 .. 82 110 .. 0.7 8.1
MOSC_N 1/1 209 246 .. 72 110 .. 2.8 2.6
DUF1336 1/1 214 225 .. 1 13 [. 0.6 6.7
MethyltransfD12 1/1 279 305 .. 251 278 .. 0.2 8.5
PIG-L 1/1 297 323 .. 99 128 .. 4.5 0.59
RHS_repeat 1/14 298 338 .. 1 44 [] 10.6 0.038
PB1 1/1 303 332 .. 63 89 .] 2.7 5.1
DUF592 1/1 309 317 .. 168 176 .] 0.1 4.3
DUF920 1/1 313 325 .. 104 116 .. 1.1 7.4
RHS_repeat 2/14 347 384 .. 1 44 [] 19.3 0.00012
Kunitz_BPTI 1/1 381 403 .. 12 35 .. 1.8 4
WRC 1/1 390 399 .. 1 10 [. 2.7 7.5
DUF1561 1/1 392 397 .. 656 661 .] -2.2 8.6
PSP1 1/1 435 446 .. 1 13 [. 1.7 5.8
RHS_repeat 3/14 455 492 .. 1 44 [] 24.8 3.5e-06
RHS_repeat 4/14 516 553 .. 1 44 [] 25.1 2.9e-06
RHS_repeat 5/14 558 595 .. 1 44 [] 20.2 7.1e-05
Tup_N 1/1 597 606 .. 71 80 .] 1.7 7.6
RHS_repeat 6/14 601 637 .. 2 44 .] 28.0 4.4e-07
B-block_TFIIIC 1/1 626 642 .. 532 548 .] 0.2 5.9
RHS_repeat 7/14 642 679 .. 1 44 [] 8.8 0.12
KAR9 1/1 659 675 .. 869 885 .] -0.4 2.3
Troponin 1/1 661 673 .. 132 145 .] 2.3 5.2
RHS_repeat 8/14 684 699 .. 1 16 [. 3.6 3.7
RHS_repeat 9/14 708 742 .. 4 44 .] 8.3 0.17
Hormone_2 1/1 716 721 .. 1 6 [. 4.6 4.7
HYR 1/1 748 761 .. 61 74 .. 4.4 1.1
PBP_dimer 1/1 766 780 .. 181 195 .] 1.1 7.4
RHS_repeat 10/14 769 805 .. 1 44 [] 22.5 1.6e-05
Oxidored_molyb 1/1 805 828 .. 1 27 [. 4.3 0.96
RHS_repeat 11/14 806 826 .. 18 44 .] 4.1 2.6
Lys-AminoMut_A 1/1 819 841 .. 1 23 [. 0.1 5.8
S_layer_N 1/1 819 828 .. 315 324 .] -0.1 9.6
Glyoxalase 1/1 820 828 .. 141 149 .] 2.1 3.5
DUF2394 1/1 873 886 .. 29 44 .] 2.7 5.4
RHS_repeat 12/14 877 914 .. 1 44 [] 29.4 1.8e-07
RHS_repeat 13/14 947 965 .. 21 44 .] 9.3 0.089
RHS_repeat 14/14 969 998 .. 1 31 [. 11.5 0.021
MerR 1/1 972 988 .. 22 39 .] 3.2 8.1
Ribosomal_L14 1/1 976 988 .. 78 90 .. 1.2 9.8
DUF2313 1/1 977 990 .. 178 191 .] 1.2 4.5
RHS 1/1 1066 1101 .. 6 41 .] 21.6 3.8e-06
BA14K 1/1 1119 1142 .. 1 24 [. 3.5 5.4
DUF2203 1/1 1129 1137 .. 1 9 [. 3.7 1.3
efhand_Ca_insen 1/1 1218 1226 .. 1 10 [. 1.2 9.8
DUF2584 1/1 1238 1246 .. 74 82 .] 1.5 6
Glyco_transf_28 1/1 1272 1296 .. 122 146 .. 4.4 1
DUF765 1/1 1287 1314 .. 1 29 [] 2.3 4.1
Alignments of top-scoring domains:
Pox_N2L: domain 1 of 1, from 46 to 75: score 4.0, E = 0.69
*->lsdsdiDntedeiveivldetlLPegssydiqL<-*
ls+s+ D e +ei +++L egss+di L
gi|1624557 46 LSSSATDTGER--IEIG-GAPVLLEGSSMDIEL 75
MCR_beta_N: domain 1 of 1, from 61 to 68: score 1.2, E = 5.6
CS --GGG-SS
*->giPqklEG<-*
g+P++lEG
gi|1624557 61 GAPVLLEG 68
VanW: domain 1 of 1, from 61 to 83: score 2.4, E = 3.5
*->dypiyIeaslddghltgeiysdg<-*
++p+++e+s++d +l g+i + g
gi|1624557 61 GAPVLLEGSSMDIELPGNIPCQG 83
Mycobact_memb: domain 1 of 1, from 97 to 102: score 1.6, E = 5.6
*->ClVKSa<-*
C+VKSa
gi|1624557 97 CFVKSA 102
KR: domain 1 of 1, from 124 to 152: score 0.7, E = 8.1
*->laeiradgpPlrGViHaAGvlrDallanm<-*
+a+ +a+ + GV+ aAG++++a+++n+
gi|1624557 124 VAGSKAQVAQIGGVLLAAGIVQTATVDNT 152
MOSC_N: domain 1 of 1, from 209 to 246: score 2.8, E = 2.6
*->eAFEDWEPeedggLtltAPGmppLsvplaClvsankaqr<-*
+A+ W ++++L+l+++++++++v+ + +++ ++++r
gi|1624557 209 HAYHQWIEIDGDVLRLRDADGATITVRDT-KPREPAFHR 246
DUF1336: domain 1 of 1, from 214 to 225: score 0.6, E = 6.7
*->WskepdpstFkvR<-*
W e+d+++ ++R
gi|1624557 214 WI-EIDGDVLRLR 225
MethyltransfD12: domain 1 of 1, from 279 to 305: score 0.2, E = 8.5
CS HHHHHHHH..HCTT-EEEEEEESEETTE
*->Latvlkslskskfgikfllsnsfeklik<-*
++t+l+++s +++g+k++l ++ e+l +
gi|1624557 279 GRTFLREIS-NESGHKVVLEYDAERLVR 305
PIG-L: domain 1 of 1, from 297 to 323: score 4.5, E = 0.59
CS HHHHHHHHHHHHHH-ECEEEEE-TTTTTSS
*->eelaaaLarlirevrPdvVitpdpnGgdgH<-*
e +a++L+r+++ +r +vV+t+d dgH
gi|1624557 297 EYDAERLVRIVDTARRTVVLTHDG---DGH 323
RHS_repeat: domain 1 of 14, from 298 to 338: score 10.6, E = 0.038
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltltts...tdasGtt
YD + rL+ + d++ +++ +++D+ g++++l + + ++G+t
gi|1624557 298 YD-AERLVRIVDTARRTV-VLTHDGDGHIVRL----QvfpPGGEGRT 338
<-*
gi|1624557 - -
PB1: domain 1 of 1, from 303 to 332: score 2.7, E = 5.1
CS HHHHHHHHHHT..T. STC SEEEEEEET
*->Leeaieearsllses..ksk.tlrlhvfpa<-*
L + +++ar+++ +++++ ++++rl+vfp
gi|1624557 303 LVRIVDTARRTVVLThdGDGhIVRLQVFPP 332
DUF592: domain 1 of 1, from 309 to 317: score 0.1, E = 4.3
*->tAkKILVLT<-*
tA++ +VLT
gi|1624557 309 TARRTVVLT 317
DUF920: domain 1 of 1, from 313 to 325: score 1.1, E = 7.4
*->TVVRkpnGEGHAV<-*
TVV++ +G+GH V
gi|1624557 313 TVVLTHDGDGHIV 325
RHS_repeat: domain 2 of 14, from 347 to 384: score 19.3, E = 0.00012
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
Y++ G L+ vtd+ g + tY+YD+ +r+ ++ t + G
gi|1624557 347 YSDGGELVKVTDALGHAE-TYGYDEQRRMNHR-----TLPTGLS 384
Kunitz_BPTI: domain 1 of 1, from 381 to 403: score 1.8, E = 4
CS STSECEEEEEETTTTEEEEEEECS
*->kgsilpRyyYnpstgqCepFiYgG<-*
+g +y Y+p++g+C++ + G
gi|1624557 381 TGLS-FHYVYDPESGRCVRSWGDG 403
WRC: domain 1 of 1, from 390 to 399: score 2.7, E = 7.5
*->daepgRCrRt<-*
d+e+gRC R+
gi|1624557 390 DPESGRCVRS 399
DUF1561: domain 1 of 1, from 392 to 397: score -2.2, E = 8.6
*->rSGRCa<-*
+SGRC+
gi|1624557 392 ESGRCV 397
PSP1: domain 1 of 1, from 435 to 446: score 1.7, E = 5.8
*->plksviRvADtde<-*
+++sv+R+A +++
gi|1624557 435 EDGSVVREA-SPD 446
RHS_repeat: domain 3 of 14, from 455 to 492: score 24.8, E = 3.5e-06
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
+Da+G L+ +++++g ++ t++ D++g+lt++ td G++
gi|1624557 455 FDADGLLLKTKNAAGDTL-TFTRDGRGNLTRI-----TDSIGRV 492
RHS_repeat: domain 4 of 14, from 516 to 553: score 25.1, E = 2.9e-06
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
YD ++rLt v+++sg+ + t++YD+ grl a+ + ++G +
gi|1624557 516 YDHRNRLTWVRYTSGAFL-TLTYDEQGRLAAV-----HGPDGLR 553
RHS_repeat: domain 5 of 14, from 558 to 595: score 20.2, E = 7.1e-05
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
YD++++ + ++p+++ + ++r+Da+gr + d+ G++
gi|1624557 558 YDEQHNAAEERTPRDGLR-RWRHDALGRPIVY-----VDPLGRV 595
Tup_N: domain 1 of 1, from 597 to 606: score 1.7, E = 7.6
*->KreLEsRggq<-*
+reL++ g++
gi|1624557 597 RRELDALGRP 606
RHS_repeat: domain 6 of 14, from 601 to 637: score 28.0, E = 4.4e-07
*->DanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
Da+Gr ta p+g+++ ++++Da+grlt++ td+ G++
gi|1624557 601 DALGRPTALHLPDGTSL-RFEHDALGRLTRR-----TDTLGRV 637
B-block_TFIIIC: domain 1 of 1, from 626 to 642: score 0.2, E = 5.9
*->aivrdtedeGrirfyRy<-*
+++r t+ Gr ++Ry
gi|1624557 626 RLTRRTDTLGRVETFRY 642
RHS_repeat: domain 7 of 14, from 642 to 679: score 8.8, E = 0.12
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
Y + ++vt p+g+ + +++D rl ++ +++G+t
gi|1624557 642 YTGLKSPVEVTQPDGAIW-SLSFDLNERLQQV-----KNPKGET 679
KAR9: domain 1 of 1, from 659 to 675: score -0.4, E = 2.3
*->WvprskhknlvhrLKeP<-*
W+ ++++++++ + K P
gi|1624557 659 WSLSFDLNERLQQVKNP 675
Troponin: domain 1 of 1, from 661 to 673: score 2.3, E = 5.2
CS -SSCHHHHHHHHHH
*->vsmDkLRanLKeVK<-*
+s+D L + L++VK
gi|1624557 661 LSFD-LNERLQQVK 673
RHS_repeat: domain 8 of 14, from 684 to 699: score 3.6, E = 3.7
*->YDanGrLtavtdpsgp<-*
YD++G+L + + ++g+
gi|1624557 684 YDRAGNLREYRSYDGR 699
RHS_repeat: domain 9 of 14, from 708 to 742: score 8.3, E = 0.17
*->nGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
nGrL v ++g+ + +r+D+agr+ a ++ G++
gi|1624557 708 NGRLARVDHADGTFR-ALRHDGAGRILAE-----ETPHGVV 742
Hormone_2: domain 1 of 1, from 716 to 721: score 4.6, E = 4.7
*->HaDGtF<-*
HaDGtF
gi|1624557 716 HADGTF 721
HYR: domain 1 of 1, from 748 to 761: score 4.4, E = 1.1
*->EettVtYtatDnaG<-*
E+ +V+Y+++D+aG
gi|1624557 748 EDLVVEYIFEDPAG 761
PBP_dimer: domain 1 of 1, from 766 to 780: score 1.1, E = 7.4
*->kyevDarGrviptls<-*
++e+D+ Grv+ ++
gi|1624557 766 RVERDPLGRVVAETQ 780
RHS_repeat: domain 10 of 14, from 769 to 805: score 22.5, E = 1.6e-05
*->YDanGrLtavtdpsgpvgqtYrYDaagrltaltlttstdasGtt<-*
D +Gr++a t ++g+ +Y+YDa +r ta+ + + G +
gi|1624557 769 RDPLGRVVAET-QNGRMI-RYEYDAQNRCTAR-----HLPTGHI 805
Oxidored_molyb: domain 1 of 1, from 805 to 828: score 4.3, E = 0.96
*->yvrnhdgvvPeygdvpeidladWrLeV<-*
+r++ ++e+g+v ++d++++r+e+
gi|1624557 805 ITRYT---YDEEGNVSSLDHDGYRVEI 828
RHS_repeat: domain 11 of 14, from 806 to 826: score 4.1, E = 2.6
*->gqtYrYDaagrltaltlttstdasGtt<-*
+ +Y+YD++g++ +l + + ++
gi|1624557 806 T-RYTYDEEGNVSSL-----DHDGYRV 826
Lys-AminoMut_A: domain 1 of 1, from 819 to 841: score 0.1, E = 5.8
CS S---HHHHHHHHHHHHHHHHHHH
*->LnLDfalVerARelArrIaadvq<-*
L+ D +Ve R+lA+ +++ v+
gi|1624557 819 LDHDGYRVEIQRDLAGSVVRKVF 841
S_layer_N: domain 1 of 1, from 819 to 828: score -0.1, E = 9.6
*->vefdGYeVkI<-*
++ dGY+V+I
gi|1624557 819 LDHDGYRVEI 828
Glyoxalase: domain 1 of 1, from 820 to 828: score 2.1, E = 3.5
CS TTTEEEEEE
*->DPdGnliEl<-*
D+dG+++E+
gi|1624557 820 DHDGYRVEI 828
DUF2394: domain 1 of 1, from 873 to 886: score 2.7, E = 5.4
*->rvYrldaaadGkLtpa<-*
r+Y++d a+G L+++
gi|1624557 873 RLYAYD--AAGALVER 886
RHS_repeat: domain 12 of 14, from 877 to 914: score 29.4, E = 1.8e-07
*->YDanGrLtavtdpsgpvgq.t.YrYDaagrltaltlttstdasGtt<
YDa+G L++ +++++ +Y+YD +g+l a+ +++G++
gi|1624557 877 YDAAGALVE---RNDRRWGiSrYSYDRLGMLLAA-----SSPKGRE 914
-*
gi|1624557 - -
RHS_repeat: domain 13 of 14, from 947 to 965: score 9.3, E = 0.089
*->YrYDaagrltaltlttstdasGtt<-*
Y YDaa+r+t+ t +G+t
gi|1624557 947 YAYDAANRRTRE-----TRSDGAT 965
RHS_repeat: domain 14 of 14, from 969 to 998: score 11.5, E = 0.021
*->YDanGrLtavtdpsgpvgqtYrYDaagrlta<-*
+D +G+L +v+ p+g+++ + YDa+ r+++
gi|1624557 969 WDCRGQLREVRRPDGTRV-LFAYDAFSRRVR 998
MerR: domain 1 of 1, from 972 to 988: score 3.2, E = 8.1
CS TTSSS-SCEETTTS-EEE
*->eGLllppprrtegGyRrY<-*
+G +l++ rr++g++ ++
gi|1624557 972 RG-QLREVRRPDGTRVLF 988
Ribosomal_L14: domain 1 of 1, from 976 to 988: score 1.2, E = 9.8
CS S-EE-TTSEEEEE
*->KelkRkDGsfirF<-*
+e++R+DG+++ F
gi|1624557 976 REVRRPDGTRVLF 988
DUF2313: domain 1 of 1, from 977 to 990: score 1.2, E = 4.5
*->erlkPAHTvviFaY<-*
e ++P +T v+FaY
gi|1624557 977 EVRRPDGTRVLFAY 990
RHS: domain 1 of 1, from 1066 to 1101: score 21.6, E = 3.8e-06
*->tDqiGtPLeLtdseGeivWqArYdaWGnvleEevsq<-*
tD++Gt eL+ +eGe++W+A + a G ++e ++
gi|1624557 1066 TDHVGTTTELIGPEGEVAWSAHHSAFGIITEAARPK 1101
BA14K: domain 1 of 1, from 1119 to 1142: score 3.5, E = 5.4
*->qhiawCsaRYRSYdPrdnTyqgyd<-*
+ + C+ RYR +dP + ++++ d
gi|1624557 1119 EETELCYVRYRYFDPKTARFLSPD 1142
DUF2203: domain 1 of 1, from 1129 to 1137: score 3.7, E = 1.3
*->ryFtldEAr<-*
ryF++++Ar
gi|1624557 1129 RYFDPKTAR 1137
efhand_Ca_insen: domain 1 of 1, from 1218 to 1226: score 1.2, E = 9.8
*->DtdTaEQViq<-*
t+T++Q++q
gi|1624557 1218 -THTPDQLLQ 1226
DUF2584: domain 1 of 1, from 1238 to 1246: score 1.5, E = 6
*->eLvSLnStN<-*
+L+ LnS N
gi|1624557 1238 QLITLNSCN 1246
Glyco_transf_28: domain 1 of 1, from 1272 to 1296: score 4.4, E = 1
CS HHHHHCTTTSEEEEECHHHHHHHHH
*->davigfGGyvalpaliaallagipi<-*
d+v+g+G+y+a p+++a + p+
gi|1624557 1272 DLVWGVGQYIAPPVGVANSVTWTPT 1296
DUF765: domain 1 of 1, from 1287 to 1314: score 2.3, E = 4.1
*->mAsstPAsPAPsDiLssvPqseRPPGRWt<-*
+A s P P ++ s+P RP G W
gi|1624557 1287 VANSVTWTPTPDELGKSMPDLTRP-GQWN 1314
//