hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 163701978.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|163701978|ref|ZP_02120823.1|
Accession: [none]
Description: hypothetical protein MnodDRAFT_4044 [Methylobacterium nodulans ORS 2060]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HemolysinCabind Hemolysin-type calcium-binding repeat 23.8 4.8e-06 2
Big_2 Bacterial Ig-like domain (group 2) 12.6 0.0058 2
NHL NHL repeat 8.2 0.48 2
Haemagg_act haemagglutination activity domain 3.8 1.3 1
CdCA1 Cadmium carbonic anhydrase repeat 2.5 1.3 1
DUF1834 Domain of unknown function (DUF1834) 2.4 1.6 1
SUN Beta-glucosidase (SUN family) 1.5 2.2 1
GTPase_binding GTPase binding 3.4 2.6 1
DUF2239 Uncharacterized protein conserved in 1.5 2.7 1
YadA YadA-like C-terminal region 2.9 2.7 4
FG-GAP FG-GAP repeat 4.3 2.9 1
DUF1924 Domain of unknown function (DUF1924) 2.6 4.1 1
Erythro_esteras Erythromycin esterase 0.1 5.7 1
FTP Fungalysin/Thermolysin Propeptide Mot 2.4 8.7 2
FMN_bind FMN-binding domain 1.3 8.9 1
Flagellin_N Bacterial flagellin N-terminus 1.3 9.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Erythro_esteras 1/1 1 43 [. 284 329 .. 0.1 5.7
CdCA1 1/1 55 66 .. 1 13 [. 2.5 1.3
Flagellin_N 1/1 72 103 .. 109 141 .] 1.3 9.4
DUF2239 1/1 95 103 .. 185 193 .] 1.5 2.7
SUN 1/1 294 302 .. 287 295 .] 1.5 2.2
DUF1924 1/1 296 303 .. 91 98 .] 2.6 4.1
HemolysinCabind 1/2 323 333 .. 1 11 [. 3.2 8.3
HemolysinCabind 2/2 345 362 .. 1 18 [] 20.6 4.6e-05
FG-GAP 1/1 418 435 .. 1 18 [. 4.3 2.9
YadA 1/4 486 490 .. 76 80 .] 1.0 12
DUF1834 1/1 522 542 .. 131 151 .. 2.4 1.6
YadA 2/4 582 587 .. 75 80 .] 0.7 15
Haemagg_act 1/1 598 614 .. 123 139 .] 3.8 1.3
Big_2 1/2 618 659 .. 24 74 .. 6.3 0.39
NHL 1/2 625 635 .. 19 30 .] 4.1 6.5
FTP 1/2 639 659 .. 31 51 .] 1.2 19
YadA 3/4 678 683 .. 75 80 .] 0.7 15
FMN_bind 1/1 684 703 .. 48 100 .. 1.3 8.9
Big_2 2/2 715 756 .. 24 74 .. 6.3 0.39
NHL 2/2 722 732 .. 19 30 .] 4.1 6.5
FTP 2/2 736 756 .. 31 51 .] 1.2 19
YadA 4/4 775 780 .. 75 80 .] 0.7 15
GTPase_binding 1/1 823 834 .. 60 71 .] 3.4 2.6
Alignments of top-scoring domains:
Erythro_esteras: domain 1 of 1, from 1 to 43: score 0.1, E = 5.7
*->mevktVrPalpgSyEallhaaglprflldlRraradgelrewLaep<
mevk+VrP +p+ E +++++ + +++d a + lr+ L+++
gi|1637019 1 MEVKAVRPVRPDAAE--CSRCAREVAFIDP-GLDAVEVLRAGLRRE 43
-*
gi|1637019 - -
CdCA1: domain 1 of 1, from 55 to 66: score 2.5, E = 1.3
*->itPqqIkaALegR<-*
P qI++AL+gR
gi|1637019 55 -APLQIAQALRGR 66
Flagellin_N: domain 1 of 1, from 72 to 103: score 1.3, E = 9.4
CS -TTTS-...EEEEEE-SSSTT-EEEEEE---ST
*->qklLdggttfknvsfqvganagetikvdlgsvs<-*
+++L+ g + ++ +f++ga+ +t+++ +++
gi|1637019 72 IHILAHG-SPGSINFAAGAVTADTVRDHADELA 103
DUF2239: domain 1 of 1, from 95 to 103: score 1.5, E = 2.7
*->VRdHAlaLA<-*
VRdHA +LA
gi|1637019 95 VRDHADELA 103
SUN: domain 1 of 1, from 294 to 302: score 1.5, E = 2.2
*->sGsAkFVfY<-*
+G+A+FV Y
gi|1637019 294 AGKAQFVAY 302
DUF1924: domain 1 of 1, from 296 to 303: score 2.6, E = 4.1
CS HHHHHHHH
*->KGDflayL<-*
K++f+ayL
gi|1637019 296 KAQFVAYL 303
HemolysinCabind: domain 1 of 2, from 323 to 333: score 3.2, E = 8.3
CS E--SSS-EEEE
*->yGGaGnDtLyG<-*
+G aG D++ G
gi|1637019 323 DGSAGKDVIQG 333
HemolysinCabind: domain 2 of 2, from 345 to 362: score 20.6, E = 4.6e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GGaG D+L Gg G D +
gi|1637019 345 QGGAGADVLQGGLGSDFF 362
FG-GAP: domain 1 of 1, from 418 to 435: score 4.3, E = 2.9
CS CCSCEEEC-TTSSSSSEE
*->fgssvaagDlnGDGrpDl<-*
++s+ + +D nGDG +Dl
gi|1637019 418 GTSAFVYADTNGDGTADL 435
YadA: domain 1 of 4, from 486 to 490: score 1.0, E = 12
*->vGYqW<-*
vGYqW
gi|1637019 486 VGYQW 490
DUF1834: domain 1 of 1, from 522 to 542: score 2.4, E = 1.6
*->avrnLfsgklrgqGvsVYale<-*
+v++ +++++++qG++VY+++
gi|1637019 522 RVKATYTDAQSQQGIVVYSAA 542
YadA: domain 2 of 4, from 582 to 587: score 0.7, E = 15
*->GvGYqW<-*
+v+YqW
gi|1637019 582 SVSYQW 587
Haemagg_act: domain 1 of 1, from 598 to 614: score 3.8, E = 1.3
CS SEEEEEEE-SEEEEETT
*->NvgglfvtTgaisikff<-*
+v g +++T+a+s+k +
gi|1637019 598 DVSGATASTLALSFKTA 614
Big_2: domain 1 of 2, from 618 to 659: score 6.3, E = 0.39
CS TSEEEEEEESTT....SBEEEEES-TTTEEEE....TTTEEEEE-SS
*->lkatvtpsdasnkdiTkkvtWsSsnpsvAtVsntnSgstGlVtalak
+ + ++d+ n ++v ++S +p+ A+V++ + +G + a++
gi|1637019 618 YRVVASYTDGDN----HTVSVFS-DPTSAVVDT---DRAGSIAAIS- 655
CS S-EE
Gtat<-*
G+at
gi|1637019 656 GSAT 659
NHL: domain 1 of 2, from 625 to 635: score 4.1, E = 6.5
CS EE-GGGTEEEEE
*->aDgsgNhrvqvf<-*
+D +Nh v vf
gi|1637019 625 TD-GDNHTVSVF 635
FTP: domain 1 of 2, from 639 to 659: score 1.2, E = 19
*->geliVhvskdGkvksvsGdfs<-*
++++V ++++G + ++sG++
gi|1637019 639 TSAVVDTDRAGSIAAISGSAT 659
YadA: domain 3 of 4, from 678 to 683: score 0.7, E = 15
*->GvGYqW<-*
+v+YqW
gi|1637019 678 SVSYQW 683
FMN_bind: domain 1 of 1, from 684 to 703: score 1.3, E = 8.9
*->qfvgkqsadglalggddgegrdlaivvkgnadnksasdkyDevDaiS
q++ ++++d + ++S
gi|1637019 684 QVKHAGDSD---------------------------------FSNVS 697
GATlTS<-*
GAT +S
gi|1637019 698 GATSSS 703
Big_2: domain 2 of 2, from 715 to 756: score 6.3, E = 0.39
CS TSEEEEEEESTT....SBEEEEES-TTTEEEE....TTTEEEEE-SS
*->lkatvtpsdasnkdiTkkvtWsSsnpsvAtVsntnSgstGlVtalak
+ + ++d+ n ++v ++S +p+ A+V++ + +G + a++
gi|1637019 715 YRVVASYTDGDN----HTVSVFS-DPTSAVVDT---DRAGSIAAIS- 752
CS S-EE
Gtat<-*
G+at
gi|1637019 753 GSAT 756
NHL: domain 2 of 2, from 722 to 732: score 4.1, E = 6.5
CS EE-GGGTEEEEE
*->aDgsgNhrvqvf<-*
+D +Nh v vf
gi|1637019 722 TD-GDNHTVSVF 732
FTP: domain 2 of 2, from 736 to 756: score 1.2, E = 19
*->geliVhvskdGkvksvsGdfs<-*
++++V ++++G + ++sG++
gi|1637019 736 TSAVVDTDRAGSIAAISGSAT 756
YadA: domain 4 of 4, from 775 to 780: score 0.7, E = 15
*->GvGYqW<-*
+v+YqW
gi|1637019 775 SVSYQW 780
GTPase_binding: domain 1 of 1, from 823 to 834: score 3.4, E = 2.6
*->LrrPtqhlgrvg<-*
++rPtq+ +r+g
gi|1637019 823 VQRPTQRWTRIG 834
//