hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            163750921.fa
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Query sequence: gi|163750921|ref|ZP_02158154.1|
Accession:      [none]
Description:    hypothetical protein KT99_09119 [Shewanella benthica KT99]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Cytochrom_C_2   Cytochrome C'                             3.4        1.3   1
DUF2151         Uncharacterized conserved protein (DU    -0.7        2.7   1
DUF1206         Domain of Unknown Function (DUF1206)      2.4          5   1
Arch_ATPase     Archaeal ATPase                           0.9        5.7   1
Translat_reg    Bacteriophage translational regulator     1.4        6.7   1
Pterin_bind     Pterin binding enzyme                     0.6        8.7   1
DUF2408         Protein of unknown function (DUF2408)    -0.8        9.1   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
DUF1206           1/1      95   105 ..    67    77 .]     2.4        5
DUF2151           1/1      97   107 ..   794   804 .]    -0.7      2.7
DUF2408           1/1     116   129 ..     1    14 [.    -0.8      9.1
Cytochrom_C_2     1/1     163   184 ..     1    23 [.     3.4      1.3
Pterin_bind       1/1     195   207 ..   218   230 .]     0.6      8.7
Arch_ATPase       1/1     202   212 ..     1    11 [.     0.9      5.7
Translat_reg      1/1     225   238 ..   107   122 .]     1.4      6.7

Alignments of top-scoring domains:
DUF1206: domain 1 of 1, from 95 to 105: score 2.4, E = 5
                   *->wslvkAlrrrf<-*
                      ++l++Al+++f
  gi|1637509    95    YMLYQALKAKF    105

DUF2151: domain 1 of 1, from 97 to 107: score -0.7, E = 2.7
                   *->LYpqLaeKded<-*
                      LY+ L++K+++
  gi|1637509    97    LYQALKAKFKQ    107

DUF2408: domain 1 of 1, from 116 to 129: score -0.8, E = 9.1
                   *->klkelspeLqpihe<-*
                      k+  l peL+p+++
  gi|1637509   116    KIVFLRPELEPLQQ    129

Cytochrom_C_2: domain 1 of 1, from 163 to 184: score 3.4, E = 1.3
                CS    HHHHHHHHHHHHHHHHHHHHHHH
                   *->edlieyRqslmklmggWamgalg<-*
                      +d+i + q++m+ +g+  +++ +
  gi|1637509   163    KDYINQHQAMMSEIGS-SLKKGA    184

Pterin_bind: domain 1 of 1, from 195 to 207: score 0.6, E = 8.7
                CS    EEECCGHHCCHHT
                   *->vGgSRKsfiglll<-*
                      +G+S+Ksf+++++
  gi|1637509   195    SGVSGKSFVNRVA    207

Arch_ATPase: domain 1 of 1, from 202 to 212: score 0.9, E = 5.7
                   *->FvDREkELkeL<-*
                      Fv+R  EL +L
  gi|1637509   202    FVNRVAELTQL    212

Translat_reg: domain 1 of 1, from 225 to 238: score 1.4, E = 6.7
                   *->KqKdeWkLkaKYtiGn<-*
                      Kq ++WkL   Y +Gn
  gi|1637509   225    KQGHNWKLE--YQVGN    238

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