hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 163792383.fa
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Query sequence: gi|163792383|ref|ZP_02186360.1|
Accession: [none]
Description: hypothetical protein BAL199_16088 [alpha proteobacterium BAL199]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HemolysinCabind Hemolysin-type calcium-binding repeat 410.7 2.4e-123 22
DUF1769 Protein of unknown function (DUF1769) 6.8 0.35 3
GWT1 GWT1 2.5 1 1
Hep_Hag Hep_Hag 6.0 1.7 1
DUF1239 Protein of unknown function (DUF1239) 3.0 2.3 1
KTI12 Chromatin associated protein KTI12 0.9 3.2 1
DUF1130 Protein of unknown function (DUF1130) 2.0 3.4 1
DUF1017 SLBB-domain like (DUF1017) 2.2 3.4 1
SUR7 SUR7 protein 1.5 5.1 1
Peptidase_M41 Peptidase family M41 1.3 5.4 1
Anp1 Anp1 -0.6 5.5 1
RtxA RtxA repeat 3.9 5.7 2
Cu-oxidase_3 Multicopper oxidase 2.0 5.7 1
Peptidase_M10 Matrixin -0.4 6.2 1
SelA L-seryl-tRNA selenium transferase 0.7 7.4 1
NC NC domain 2.0 7.4 1
DUF1565 Protein of unknown function (DUF1565) -0.8 8.2 1
SpoIIE Stage II sporulation protein E (SpoII 0.0 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SpoIIE 1/1 23 33 .. 194 204 .] 0.0 9.7
DUF1017 1/1 49 60 .. 170 182 .] 2.2 3.4
DUF1130 1/1 51 66 .. 108 123 .] 2.0 3.4
GWT1 1/1 56 65 .. 1 10 [. 2.5 1
KTI12 1/1 113 128 .. 316 331 .] 0.9 3.2
Cu-oxidase_3 1/1 144 158 .. 109 124 .] 2.0 5.7
Anp1 1/1 156 166 .. 310 319 .] -0.6 5.5
HemolysinCabind 1/22 190 207 .. 1 18 [] 18.3 0.00022
HemolysinCabind 2/22 208 225 .. 1 18 [] 23.1 7.6e-06
HemolysinCabind 3/22 226 243 .. 1 18 [] 19.8 7.9e-05
HemolysinCabind 4/22 244 259 .. 1 16 [. 14.9 0.0024
DUF1769 1/3 248 256 .. 1 9 [. 1.5 12
HemolysinCabind 5/22 262 279 .. 1 18 [] 25.0 2.1e-06
HemolysinCabind 6/22 280 297 .. 1 18 [] 23.6 5.7e-06
HemolysinCabind 7/22 298 315 .. 1 18 [] 23.3 6.7e-06
HemolysinCabind 8/22 316 333 .. 1 18 [] 16.1 0.001
Peptidase_M10 1/1 319 326 .. 168 175 .] -0.4 6.2
HemolysinCabind 9/22 334 351 .. 1 18 [] 20.3 5.7e-05
DUF1769 2/3 338 344 .. 1 7 [. 1.5 12
HemolysinCabind 10/22 352 369 .. 1 18 [] 20.6 4.4e-05
HemolysinCabind 11/22 370 387 .. 1 18 [] 17.8 0.00031
HemolysinCabind 12/22 388 405 .. 1 18 [] 25.5 1.5e-06
DUF1565 1/1 400 410 .. 1 14 [. -0.8 8.2
DUF1239 1/1 611 637 .. 137 163 .. 3.0 2.3
NC 1/1 620 631 .. 73 84 .] 2.0 7.4
SelA 1/1 629 639 .. 364 374 .] 0.7 7.4
SUR7 1/1 649 679 .. 1 31 [. 1.5 5.1
HemolysinCabind 13/22 660 677 .. 1 18 [] 2.5 14
HemolysinCabind 14/22 678 695 .. 1 18 [] 23.4 6.3e-06
HemolysinCabind 15/22 705 722 .. 1 18 [] 17.0 0.00057
HemolysinCabind 16/22 723 740 .. 1 18 [] 10.2 0.065
HemolysinCabind 17/22 741 758 .. 1 18 [] 27.5 3.7e-07
HemolysinCabind 18/22 759 776 .. 1 18 [] 9.5 0.11
DUF1769 3/3 772 779 .. 1 8 [. 3.8 2.6
HemolysinCabind 19/22 777 794 .. 1 18 [] 27.1 4.9e-07
HemolysinCabind 20/22 795 812 .. 1 18 [] 26.9 5.5e-07
HemolysinCabind 21/22 813 830 .. 1 18 [] 18.3 0.00022
RtxA 1/2 814 831 .. 2 19 .] 3.6 6.9
Peptidase_M41 1/1 816 829 .. 104 117 .. 1.3 5.4
HemolysinCabind 22/22 832 841 .. 9 18 .] 0.2 69
Hep_Hag 1/1 873 890 .. 11 28 .] 6.0 1.7
RtxA 2/2 884 892 .. 1 9 [. 0.3 69
Alignments of top-scoring domains:
SpoIIE: domain 1 of 1, from 23 to 33: score 0.0, E = 9.7
*->DDvtlLvlrvr<-*
DD++lL++ ++
gi|1637923 23 DDASLLIAGRQ 33
DUF1017: domain 1 of 1, from 49 to 60: score 2.2, E = 3.4
*->edIveLLrNRipl<-*
++I e+L+NR +
gi|1637923 49 QQIAEYLANR-HG 60
DUF1130: domain 1 of 1, from 51 to 66: score 2.0, E = 3.4
*->vadrallarGveVvHi<-*
+a+++ +++G++ +Hi
gi|1637923 51 IAEYLANRHGIASLHI 66
GWT1: domain 1 of 1, from 56 to 65: score 2.5, E = 1
*->ANREGLvSLl<-*
ANR G++SL+
gi|1637923 56 ANRHGIASLH 65
KTI12: domain 1 of 1, from 113 to 128: score 0.9, E = 3.2
*->nvdleriaplFvdyLN<-*
+v ++++ ++F++yL+
gi|1637923 113 SVAAGKLGRGFLEYLE 128
Cu-oxidase_3: domain 1 of 1, from 144 to 158: score 2.0, E = 5.7
CS HHTT--EEEEEE-HHH
*->ayaGlyGaiiIeppas<-*
a aGl G++ ++++++
gi|1637923 144 A-AGLGGGWTVRGRDG 158
Anp1: domain 1 of 1, from 156 to 166: score -0.6, E = 5.5
*->RdGamF.PaFp<-*
RdGa F+PaF+
gi|1637923 156 RDGAAFePAFA 166
HemolysinCabind: domain 1 of 22, from 190 to 207: score 18.3, E = 0.00022
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+aG+Dt++ +GnDt
gi|1637923 190 SGTAGDDTISALDGNDTV 207
HemolysinCabind: domain 2 of 22, from 208 to 225: score 23.1, E = 7.6e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +GnD LyG+aGnDtl
gi|1637923 208 SGLDGNDLLYGDAGNDTL 225
HemolysinCabind: domain 3 of 22, from 226 to 243: score 19.8, E = 7.9e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yGG+G DtLyGg GnD l
gi|1637923 226 YGGGGVDTLYGGVGNDFL 243
HemolysinCabind: domain 4 of 22, from 244 to 259: score 14.9, E = 0.0024
CS E--SSS-EEEEESSCG
*->yGGaGnDtLyGgaGnD<-*
yG GnD L+G +GnD
gi|1637923 244 YGETGNDLLFGEDGND 259
DUF1769: domain 1 of 3, from 248 to 256: score 1.5, E = 12
*->GddllFGND<-*
G+dllFG D
gi|1637923 248 GNDLLFGED 256
HemolysinCabind: domain 5 of 22, from 262 to 279: score 25.0, E = 2.1e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG G+DtLyGg+GnDtl
gi|1637923 262 SGGVGDDTLYGGNGNDTL 279
HemolysinCabind: domain 6 of 22, from 280 to 297: score 23.6, E = 5.7e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G G D+LyGg+GnD+
gi|1637923 280 IGSSGADRLYGGDGNDWM 297
HemolysinCabind: domain 7 of 22, from 298 to 315: score 23.3, E = 6.7e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG G+D LyGg+G+Dtl
gi|1637923 298 WGGRGDDLLYGGNGADTL 315
HemolysinCabind: domain 8 of 22, from 316 to 333: score 16.1, E = 0.001
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+G D+LyG a +D++
gi|1637923 316 SGGDGVDSLYGEADDDLI 333
Peptidase_M10: domain 1 of 1, from 319 to 326: score -0.4, E = 6.2
CS HHHHHHHT
RF xxxxxxxx
*->kGIQsLYG<-*
+G+ sLYG
gi|1637923 319 DGVDSLYG 326
HemolysinCabind: domain 9 of 22, from 334 to 351: score 20.3, E = 5.7e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G G+D+L+GgaGnDtl
gi|1637923 334 SGFSGDDILFGGAGNDTL 351
DUF1769: domain 2 of 3, from 338 to 344: score 1.5, E = 12
*->GddllFG<-*
Gdd+lFG
gi|1637923 338 GDDILFG 344
HemolysinCabind: domain 10 of 22, from 352 to 369: score 20.6, E = 4.4e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+a nDtL+Gg GnD l
gi|1637923 352 RGNAQNDTLSGGLGNDAL 369
HemolysinCabind: domain 11 of 22, from 370 to 387: score 17.8, E = 0.00031
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GGa +D+L+Gg+G+D+l
gi|1637923 370 SGGADDDVLSGGGGDDLL 387
HemolysinCabind: domain 12 of 22, from 388 to 405: score 25.5, E = 1.5e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yGG G DtL Gg+GnDt+
gi|1637923 388 YGGSGFDTLVGGSGNDTF 405
DUF1565: domain 1 of 1, from 400 to 410: score -0.8, E = 8.2
*->vsGnDssnpGTnks<-*
sGnD +++G+ +s
gi|1637923 400 -SGND-TFTGS-AS 410
DUF1239: domain 1 of 1, from 611 to 637: score 3.0, E = 2.3
*->asTdqpVtitgpnfvitGvGmkanlkt<-*
++Td+p++itg +++++ + +++++
gi|1637923 611 VTTDDPIVITGSPGSSQSEAFVIDMRS 637
NC: domain 1 of 1, from 620 to 631: score 2.0, E = 7.4
*->YGtprssQveka<-*
+G p+ssQ+e++
gi|1637923 620 TGSPGSSQSEAF 631
SelA: domain 1 of 1, from 629 to 639: score 0.7, E = 7.4
*->dalvLDlRtLf<-*
+a+v+D+R+++
gi|1637923 629 EAFVIDMRSIS 639
SUR7: domain 1 of 1, from 649 to 679: score 1.5, E = 5.1
*->lffliLdgasdsiplndfywleadtagilGl<-*
f++i+++a+ ++ ++++y++ +d a+++ l
gi|1637923 649 EFVSIIGSARVIGGSGNNYAVGDDSAQFISL 679
HemolysinCabind: domain 13 of 22, from 660 to 677: score 2.5, E = 14
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG Gn+ G++ + +
gi|1637923 660 IGGSGNNYAVGDDSAQFI 677
HemolysinCabind: domain 14 of 22, from 678 to 695: score 23.4, E = 6.3e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+ G+G+DtLyGg+GnDt+
gi|1637923 678 SLGEGDDTLYGGDGNDTI 695
HemolysinCabind: domain 15 of 22, from 705 to 722: score 17.0, E = 0.00057
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G++GnDt +Gg GnDt
gi|1637923 705 FGDGGNDTVNGGTGNDTV 722
HemolysinCabind: domain 16 of 22, from 723 to 740: score 10.2, E = 0.065
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG D+ yG++ +D+
gi|1637923 723 WGGTDADVVYGNQDADVV 740
HemolysinCabind: domain 17 of 22, from 741 to 758: score 27.5, E = 3.7e-07
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yG++GnDtL+Gg+GnDt
gi|1637923 741 YGNQGNDTLFGGQGNDTV 758
HemolysinCabind: domain 18 of 22, from 759 to 776: score 9.5, E = 0.11
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG D yG+ G+D+
gi|1637923 759 FGGRDADLAYGNLGDDVV 776
DUF1769: domain 3 of 3, from 772 to 779: score 3.8, E = 2.6
*->GddllFGN<-*
Gdd+++GN
gi|1637923 772 GDDVVYGN 779
HemolysinCabind: domain 19 of 22, from 777 to 794: score 27.1, E = 4.9e-07
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yG+ GnDtLyGg+GnD+l
gi|1637923 777 YGNLGNDTLYGGDGNDVL 794
HemolysinCabind: domain 20 of 22, from 795 to 812: score 26.9, E = 5.5e-07
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yGGaG+Dt+ GgaGnDt+
gi|1637923 795 YGGAGDDTMIGGAGNDTF 812
HemolysinCabind: domain 21 of 22, from 813 to 830: score 18.3, E = 0.00022
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GG GnD ++ gaGnD++
gi|1637923 813 QGGLGNDLISTGAGNDLI 830
RtxA: domain 1 of 2, from 814 to 831: score 3.6, E = 6.9
*->aGgaNvitkvGdggdlaf<-*
+G +N + ++G+g+dl++
gi|1637923 814 GGLGNDLISTGAGNDLIA 831
Peptidase_M41: domain 1 of 1, from 816 to 829: score 1.3, E = 5.4
*->FGddeVTTGAsnDL<-*
+G+d ++TGA+nDL
gi|1637923 816 LGNDLISTGAGNDL 829
HemolysinCabind: domain 22 of 22, from 832 to 841: score 0.2, E = 69
CS EEEESSCGEE
*->LyGgaGnDtl<-*
++ g+G+Dt
gi|1637923 832 ISAGNGADTV 841
Hep_Hag: domain 1 of 1, from 873 to 890: score 6.0, E = 1.7
CS TT-EE-STTEEEESTTTE
*->snakAsgensvAlGgnal<-*
s ++A+g+ +AlGg+++
gi|1637923 873 STNNADGNVVIALGGGNT 890
RtxA: domain 2 of 2, from 884 to 892: score 0.3, E = 69
*->GaGgaNvit<-*
++Gg+N +t
gi|1637923 884 ALGGGNTLT 892
//