hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 163792384.fa
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Query sequence: gi|163792384|ref|ZP_02186361.1|
Accession: [none]
Description: Hemolysin-type calcium-binding toxin [alpha proteobacterium BAL199]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HemolysinCabind Hemolysin-type calcium-binding repeat 270.3 8.9e-81 15
HtaA Htaa 4.5 0.42 1
PKD PKD domain 4.6 0.69 1
DUF1769 Protein of unknown function (DUF1769) 5.0 1.2 3
DUF1684 Protein of unknown function (DUF1684) 2.8 2.2 1
DUF1239 Protein of unknown function (DUF1239) 2.7 2.8 1
OsmC OsmC-like protein 2.6 4 1
PEP-utilizers PEP-utilising enzyme, mobile domain 3.0 4 1
DUF2249 Uncharacterized conserved protein (DU 2.2 4.3 1
DS Deoxyhypusine synthase 0.2 4.9 1
VLPT Variable length PCR target protein (V 2.7 4.9 1
SUR7 SUR7 protein 1.5 5.1 1
CBM_3 Cellulose binding domain 2.5 5.3 1
NiFeSe_Hases Nickel-dependent hydrogenase -1.2 5.4 1
Orexin Prepro-orexin 0.6 5.6 1
CoA_binding CoA binding domain 2.2 6.1 1
SCPU Spore Coat Protein U domain 2.4 6.5 1
MarC MarC family integral membrane protein 0.7 6.7 1
Asp_Glu_race Asp/Glu/Hydantoin racemase 1.2 7.4 1
SelA L-seryl-tRNA selenium transferase 0.7 7.4 1
Peptidase_M23 Peptidase family M23 0.4 8.5 1
DUF2134 Predicted membrane protein (DUF2134) 1.2 8.6 1
DUF473 Protein of unknown function (DUF473) 1.3 8.8 1
PEPcase Phosphoenolpyruvate carboxylase -2.7 9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Orexin 1/1 5 26 .. 108 131 .] 0.6 5.6
NiFeSe_Hases 1/1 11 16 .. 1 6 [. -1.2 5.4
Asp_Glu_race 1/1 45 77 .. 180 215 .. 1.2 7.4
DUF473 1/1 54 64 .. 1 11 [. 1.3 8.8
Peptidase_M23 1/1 116 128 .. 100 111 .] 0.4 8.5
DS 1/1 134 148 .. 317 330 .] 0.2 4.9
MarC 1/1 141 158 .. 194 211 .] 0.7 6.7
HemolysinCabind 1/15 173 185 .. 6 18 .] 9.7 0.088
CoA_binding 1/1 206 213 .. 97 107 .] 2.2 6.1
DUF2134 1/1 211 252 .. 1 62 [. 1.2 8.6
PKD 1/1 216 242 .. 1 37 [. 4.6 0.69
PEP-utilizers 1/1 223 236 .. 78 92 .] 3.0 4
HemolysinCabind 2/15 253 263 .. 8 18 .] 2.6 12
HemolysinCabind 3/15 264 281 .. 1 18 [] 26.8 5.9e-07
HemolysinCabind 4/15 282 299 .. 1 18 [] 25.5 1.5e-06
HemolysinCabind 5/15 300 317 .. 1 18 [] 23.6 5.5e-06
HemolysinCabind 6/15 318 335 .. 1 18 [] 25.3 1.7e-06
HtaA 1/1 345 377 .. 132 167 .. 4.5 0.42
OsmC 1/1 396 420 .. 1 26 [. 2.6 4
DUF1684 1/1 406 436 .. 60 93 .. 2.8 2.2
PEPcase 1/1 446 455 .. 951 960 .] -2.7 9
DUF2249 1/1 521 530 .. 1 10 [. 2.2 4.3
DUF1239 1/1 534 560 .. 137 163 .. 2.7 2.8
VLPT 1/1 542 570 .. 1 29 [] 2.7 4.9
SelA 1/1 552 562 .. 364 374 .] 0.7 7.4
SUR7 1/1 572 602 .. 1 31 [. 1.5 5.1
HemolysinCabind 7/15 583 600 .. 1 18 [] 2.5 14
HemolysinCabind 8/15 601 618 .. 1 18 [] 23.4 6.3e-06
HemolysinCabind 9/15 628 645 .. 1 18 [] 14.5 0.0032
HemolysinCabind 10/15 646 663 .. 1 18 [] 9.2 0.13
DUF1769 1/3 660 667 .. 1 9 [. 0.0 32
HemolysinCabind 11/15 664 681 .. 1 18 [] 26.8 5.8e-07
DUF1769 2/3 677 683 .. 1 7 [. 1.2 15
HemolysinCabind 12/15 682 699 .. 1 18 [] 15.5 0.0016
DUF1769 3/3 695 702 .. 1 8 [. 3.8 2.6
HemolysinCabind 13/15 700 717 .. 1 18 [] 25.2 1.8e-06
HemolysinCabind 14/15 718 735 .. 1 18 [] 25.6 1.3e-06
HemolysinCabind 15/15 736 753 .. 1 18 [] 14.0 0.0044
SCPU 1/1 739 769 .. 1 36 [. 2.4 6.5
CBM_3 1/1 773 807 .. 55 92 .] 2.5 5.3
Alignments of top-scoring domains:
Orexin: domain 1 of 1, from 5 to 26: score 0.6, E = 5.6
*->rlCPGRRClaAaAsalAPrGrsrv<-*
+l PGRR l A+ lA Gr +v
gi|1637923 5 HLVPGRRGLEQIATHLA--GRRGV 26
NiFeSe_Hases: domain 1 of 1, from 11 to 16: score -1.2, E = 5.4
CS -HHHHH
*->RGLEvI<-*
RGLE+I
gi|1637923 11 RGLEQI 16
Asp_Glu_race: domain 1 of 1, from 45 to 77: score 1.2, E = 7.4
CS TCCCCTC.CCHHHHHHHHHCCCCCHTT-SCEEE-.S
*->EegklggveaaleellkellkplkedgaDtiiLGaC<-*
E+ +l++ ++++ +l+ ++ +l+ ++a+++ G C
gi|1637923 45 ERVDLPA-LVMRRVALAGIADALA-PDAEVLLYG-C 77
DUF473: domain 1 of 1, from 54 to 64: score 1.3, E = 8.8
*->MkclALTGIsr<-*
M+ +AL+GI++
gi|1637923 54 MRRVALAGIAD 64
Peptidase_M23: domain 1 of 1, from 116 to 128: score 0.4, E = 8.5
CS EEEE EGGGEE--
*->FEir.knGkpvdP<-*
+ +r++nG +vdP
gi|1637923 116 WTLRgRNGAAVDP 128
DS: domain 1 of 1, from 134 to 148: score 0.2, E = 4.9
CS HHHHHH HHHHHTGG
*->ATivFP.llvAetla<-*
A ++FP+llvA++++
gi|1637923 134 ARAAFPgLLVAYAMD 148
MarC: domain 1 of 1, from 141 to 158: score 0.7, E = 6.7
*->lLvaiavQmivdGikgif<-*
lLva a+ ++++Gi g +
gi|1637923 141 LLVAYAMDIFGNGITGTV 158
HemolysinCabind: domain 1 of 15, from 173 to 185: score 9.7, E = 0.088
CS S-EEEEESSCGEE
*->nDtLyGgaGnDtl<-*
nDtL+G +G Dtl
gi|1637923 173 NDTLNGAGGTDTL 185
CoA_binding: domain 1 of 1, from 206 to 213: score 2.2, E = 6.1
CS EEE-SSS..--
*->IvniTevrLgv<-*
IvniT+ gv
gi|1637923 206 IVNITA---GV 213
DUF2134: domain 1 of 1, from 211 to 252: score 1.2, E = 8.6
*->AAAqrlsdgsaaaanssaaaaaaAaaaaarngfgggdlalslsvecG
A++q++s +++ + aA ++++ n s++ ++
gi|1637923 211 AGVQDISTNDG---------NVAAGETLTVNA--------STNSSSV 240
ywnatdaaadspprf<-*
+wn aa + +f
gi|1637923 241 TWNG---AAETDGVF 252
PKD: domain 1 of 1, from 216 to 242: score 4.6, E = 0.69
CS EESS.....SSSEBTTEEEEEEECT.B.TT.SSECEE
*->vsasaveegpsvvalgetVtFtassSydpdpGspvsy<-*
+s++ +++va+get t++as + s v++
gi|1637923 216 ISTN-----DGNVAAGETLTVNAST----N-SSSVTW 242
PEP-utilizers: domain 1 of 1, from 223 to 236: score 3.0, E = 4
CS ESTTEEEEE.CTSEE
*->lkdGdiitvCDGstG<-*
+ G+++tv ++st+
gi|1637923 223 VAAGETLTV-NASTN 236
HemolysinCabind: domain 2 of 15, from 253 to 263: score 2.6, E = 12
CS EEEEESSCGEE
*->tLyGgaGnDtl<-*
+++Gg+G+D l
gi|1637923 253 SMTGGSGADSL 263
HemolysinCabind: domain 3 of 15, from 264 to 281: score 26.8, E = 5.9e-07
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GGaG Dt++G++GnDtl
gi|1637923 264 VGGAGADTISGNSGNDTL 281
HemolysinCabind: domain 4 of 15, from 282 to 299: score 25.5, E = 1.5e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G aGnD+L+Gg GnD+l
gi|1637923 282 RGEAGNDRLFGGTGNDQL 299
HemolysinCabind: domain 5 of 15, from 300 to 317: score 23.6, E = 5.5e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GGaG DtL+GgaGnD+
gi|1637923 300 SGGAGTDTLSGGAGNDLM 317
HemolysinCabind: domain 6 of 15, from 318 to 335: score 25.3, E = 1.7e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG G DtL GgaGnDt+
gi|1637923 318 SGGSGFDTLVGGAGNDTF 335
HtaA: domain 1 of 1, from 345 to 377: score 4.5, E = 0.42
*->vtkgdfvpfakaelatiefksagdlttedvsgtatt<-*
+t++df+++++++++++++ s+ ++t+++ t++t
gi|1637923 345 DTISDFATGDSIVVTGVDLSSLNGTTASS---TLAT 377
OsmC: domain 1 of 1, from 396 to 420: score 2.6, E = 4
CS EEECCCT.EEEEEEHHHHHTS-SSS-
*->vksesGgllelildaPpelgGkgegp<-*
++ ++G+ +++l aP + G+g+g+
gi|1637923 396 ASFSGGN-TTITLVAPVVDNGGGGGT 420
DUF1684: domain 1 of 1, from 406 to 436: score 2.8, E = 2.2
*->rLrvfredeeykgaLfvpFrDaTsGkGeTYgaGR<-*
+L++ ++ + ++g++ v+ D Ts++ T+g++R
gi|1637923 406 TLVAPVV-DNGGGGGTVVVNDTTSTD--TTGGAR 436
PEPcase: domain 1 of 1, from 446 to 455: score -2.7, E = 9
*->GiAAGmqntG<-*
G AA +qntG
gi|1637923 446 GSAAVVQNTG 455
DUF2249: domain 1 of 1, from 521 to 530: score 2.2, E = 4.3
*->lDVRtipPre<-*
lDVRti P +
gi|1637923 521 LDVRTIVPTQ 530
DUF1239: domain 1 of 1, from 534 to 560: score 2.7, E = 2.8
*->asTdqpVtitgpnfvitGvGmkanlkt<-*
++Td+p++itg +++++ + +++++
gi|1637923 534 VTTDDPIVITGSTGSSQSEAFVIDMRS 560
VLPT: domain 1 of 1, from 542 to 570: score 2.7, E = 4.9
*->LqqssdsDlHesssvELpdpskEevqles<-*
+ s s e++ +++ + s ++ql++
gi|1637923 542 ITGSTGSSQSEAFVIDMRSISGKVLQLDN 570
SelA: domain 1 of 1, from 552 to 562: score 0.7, E = 7.4
*->dalvLDlRtLf<-*
+a+v+D+R+++
gi|1637923 552 EAFVIDMRSIS 562
SUR7: domain 1 of 1, from 572 to 602: score 1.5, E = 5.1
*->lffliLdgasdsiplndfywleadtagilGl<-*
f++i+++a+ ++ ++++y++ +d a+++ l
gi|1637923 572 EFVSIIGSARVIGGSGNNYAVGDDSAQFISL 602
HemolysinCabind: domain 7 of 15, from 583 to 600: score 2.5, E = 14
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG Gn+ G++ + +
gi|1637923 583 IGGSGNNYAVGDDSAQFI 600
HemolysinCabind: domain 8 of 15, from 601 to 618: score 23.4, E = 6.3e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+ G+G+DtLyGg+GnDt+
gi|1637923 601 SLGEGDDTLYGGDGNDTI 618
HemolysinCabind: domain 9 of 15, from 628 to 645: score 14.5, E = 0.0032
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +G Dt +Gg G+Dt
gi|1637923 628 FGEGGADTVNGGTGADTV 645
HemolysinCabind: domain 10 of 15, from 646 to 663: score 9.2, E = 0.13
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG D+ yG++ +D+
gi|1637923 646 WGGTDADVAYGNQDDDVV 663
DUF1769: domain 1 of 3, from 660 to 667: score 0.0, E = 32
*->GddllFGND<-*
dd+++GN+
gi|1637923 660 -DDVVYGNQ 667
HemolysinCabind: domain 11 of 15, from 664 to 681: score 26.8, E = 5.8e-07
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yG++GnDtL+Gg+GnD+
gi|1637923 664 YGNQGNDTLFGGQGNDVV 681
DUF1769: domain 2 of 3, from 677 to 683: score 1.2, E = 15
*->GddllFG<-*
G+d++FG
gi|1637923 677 GNDVVFG 683
HemolysinCabind: domain 12 of 15, from 682 to 699: score 15.5, E = 0.0016
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+ D+ yG+ G+D+
gi|1637923 682 FGGQDADIVYGNLGDDVV 699
DUF1769: domain 3 of 3, from 695 to 702: score 3.8, E = 2.6
*->GddllFGN<-*
Gdd+++GN
gi|1637923 695 GDDVVYGN 702
HemolysinCabind: domain 13 of 15, from 700 to 717: score 25.2, E = 1.8e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yG+ G+DtLyGgaGnD+l
gi|1637923 700 YGNLGDDTLYGGAGNDLL 717
HemolysinCabind: domain 14 of 15, from 718 to 735: score 25.6, E = 1.3e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yGGaGnDtL Gg GnDt+
gi|1637923 718 YGGAGNDTLIGGVGNDTF 735
HemolysinCabind: domain 15 of 15, from 736 to 753: score 14.0, E = 0.0044
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GG GnD + g GnD++
gi|1637923 736 QGGLGNDLFSTGTGNDVI 753
SCPU: domain 1 of 1, from 739 to 769: score 2.4, E = 6.5
*->lpYqLYqDsgrtevwgsGqkdvgsatlldtlglgta<-*
l ++L+++ +++ v+ v+ ++++dt++++++
gi|1637923 739 LGNDLFSTGTGNDVII-----VSASSGADTVSDFDG 769
CBM_3: domain 1 of 1, from 773 to 807: score 2.5, E = 5.3
CS CCEEEETEEEECGCCEEEEEEEEEEEETTGCEEEEEEE
*->dwaqvggsYsnynsnvtgsFvklsppdagnadyYvEig<-*
d +qv sn+n++ + +F l + ++nad vEi
gi|1637923 773 DRVQVA---SNINGGSIDTFAELQAASTNNADGNVEIA 807
//