hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 165924836.fa
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Query sequence: gi|165924836|ref|ZP_02220668.1|
Accession: [none]
Description: putative phage minor structural protein [Yersinia pestis biovar Orientalis str. F1991016]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FG-GAP FG-GAP repeat 41.7 3.4e-11 4
HemolysinCabind Hemolysin-type calcium-binding repeat 28.8 1.4e-07 3
DUF885 Bacterial protein of unknown function 3.7 0.4 1
DUF1970 Domain of unknown function (DUF1970) 3.0 0.49 1
Glyco_hydro_26 Glycosyl hydrolase family 26 4.1 0.53 1
MAM1 Monopolin complex protein MAM1 4.0 0.59 1
Gtr1_RagA Gtr1/RagA G protein conserved region 4.2 0.66 1
ATP-synt ATP synthase 2.6 0.66 1
RecO Recombination protein O 3.6 0.84 1
SDH_beta Serine dehydratase beta chain 4.2 0.84 1
zf-DBF DBF zinc finger 5.6 1 1
Phage_Gp15 Bacteriophage Gp15 protein 1.9 1 1
DUF1248 Protein of unknown function (DUF1248) 3.0 1.1 1
KNOX2 KNOX2 domain 5.3 1.1 1
DUF1108 Protein of unknown function (DUF1108) 0.9 1.1 1
Cw-hydrolase Cell wall-associated hydrolase 4.0 1.2 1
STAG STAG domain 3.7 1.3 2
CIA30 Complex I intermediate-associated pro 3.1 1.3 1
Orthopox_F7 Orthopoxvirus F7 protein 3.0 1.4 1
DUF975 Protein of unknown function (DUF975) 2.7 1.4 1
Glucosaminidase Mannosyl-glycoprotein endo-beta-N-ace 3.7 1.5 1
DUF1814 Domain of unknown function (DUF1814) 2.5 1.7 1
Pox_ser-thr_kin Poxvirus serine/threonine protein kin 2.3 1.8 1
eIF-4B Plant specific eukaryotic initiation -1.7 1.9 1
DUF1926 Domain of unknown function (DUF1926) 2.4 1.9 1
PepSY_TM PepSY-associated TM helix 5.8 2 1
Nitr_red_assoc Conserved nitrate reductase-associate 1.7 2 1
ERO1 Endoplasmic Reticulum Oxidoreductin 1 1.4 2.3 1
UBA_2 Ubiquitin associated domain (UBA) 2.9 2.8 1
DUF2072 Zn-ribbon containing protein (DUF2072 1.6 2.8 1
DUF867 Protein of unknown function (DUF867) 2.2 3.1 1
DUF2002 Protein of unknown function (DUF2002) 1.9 3.1 1
T-box T-box 1.1 3.4 1
DUF1195 Protein of unknown function (DUF1195) 1.7 3.5 1
Nup153 Nucleoporin Nup153-like 0.4 3.7 1
PC_rep Proteasome/cyclosome repeat 3.6 3.7 1
BRK BRK domain 3.6 3.8 1
Toprim_N DNA primase catalytic core, N-termina 2.7 3.8 1
DUF1972 Domain of unknown function (DUF1972) 1.6 3.9 1
Sas10_Utp3_C Sas10 C-terminal domain 3.5 3.9 1
Mtr2 Nuclear pore RNA shuttling protein Mt 1.2 4 1
WaaY Lipopolysaccharide core biosynthesis 1.6 4.1 1
UPF0147 Uncharacterised protein family (UPF01 3.7 4.2 1
TMP-TENI Thiamine monophosphate synthase/TENI 1.6 4.3 1
FerA FerA (NUC095) domain 3.7 4.7 1
DUF1113 Protein of unknown function (DUF1113) 1.5 4.9 1
CUT CUT domain 2.6 4.9 1
CaM_bdg_C0 Calmodulin-binding domain C0 of NMDA 2.5 5 1
RE_NgoPII NgoPII restriction endonuclease 1.5 5 1
Ninjurin Ninjurin 1.1 5.1 1
Mad3_BUB1_II Mad3/BUB1 homology region 2 2.6 5.2 1
VHS VHS domain 2.0 5.3 1
DUF1997 Protein of unknown function (DUF1997) 1.4 5.3 1
PSP1 PSP1 C-terminal conserved region 1.8 5.4 1
DUF2328 Uncharacterized protein conserved in 0.4 5.4 1
EST1_DNA_bind Est1 DNA/RNA binding domain 2.1 5.5 2
DUF2213 Uncharacterized protein conserved in 1.4 5.5 1
VDRIP Vitamin-D-receptor interacting protei -0.6 5.7 1
Herpes_PAP Herpesvirus polymerase accessory prot -1.0 5.7 1
Shigella_OspC Shigella flexneri OspC protein -0.1 5.7 1
Antimicrobial16 Double glycine cleavage site bacterio 2.4 5.8 1
GntP_permease GntP family permease 0.3 5.8 1
Formyl_trans_C Formyl transferase, C-terminal domain 2.0 5.8 1
Phage_sheath_1 Phage tail sheath protein -0.9 6.1 1
Cas_Csm6 CRISPR-associated protein (Cas_Csm6) 0.1 6.2 1
DUF1767 Domain of unknown function (DUF1767) 1.8 6.3 1
Ax_dynein_light Axonemal dynein light chain 1.3 6.4 1
Lipoprotein_17 Lipoprotein associated domain 2.5 6.4 1
CFEM CFEM domain 2.1 6.5 1
PKI cAMP-dependent protein kinase inhibit 1.4 6.8 1
Gp49 Phage derived protein Gp49-like (DUF8 2.7 6.9 1
essB Predicted membrane protein essB 0.7 7 1
HTS Homoserine O-succinyltransferase -1.1 7.1 1
FlgD Flagellar hook capping protein 1.0 7.2 1
GnsAB GnsA/GnsB family 1.9 7.4 1
OstA_C Organic solvent tolerance protein -0.2 7.4 1
DUF1002 Protein of unknown function (DUF1002) 1.0 7.6 1
DUF1451 Protein of unknown function (DUF1451) 1.3 7.8 1
RYDR_ITPR RIH domain 0.5 7.8 1
Peptidase_S55 SpoIVB peptidase S55 0.8 7.9 1
TYW3 Methyltransferase TYW3 0.6 8 1
Queuosine_synth Queuosine biosynthesis protein 0.3 8 1
Peptidase_U57 YabG peptidase U57 0.2 8.4 1
Mqo Malate:quinone oxidoreductase (Mqo) -0.6 8.5 1
UspB Universal stress protein B (UspB) 1.6 8.5 1
Phage_integr_N Phage integrase, N-terminal SAM-like 1.6 8.6 1
ATG11 Autophagy-related protein 11 0.4 8.8 1
U3_assoc_6 U3 small nucleolar RNA-associated pro 1.7 8.8 1
SPC25 Microsomal signal peptidase 25 kDa su 0.3 8.9 1
DUF2599 Protein of unknown function (DUF2599) 0.0 9 1
TmoB Toluene-4-monooxygenase system protei 0.8 9.1 1
DUF1322 Protein of unknown function (DUF1322) 1.2 9.1 1
Crp Bacterial regulatory proteins, crp fa 2.6 9.1 1
DED Death effector domain 1.5 9.4 1
aPHC Alkaline phytoceramidase (aPHC) -0.6 9.4 1
SIS SIS domain 1.6 9.6 1
VWA von Willebrand factor type A domain -0.2 9.6 1
Supt5 Supt5 repeat 2.4 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Mad3_BUB1_II 1/1 8 32 .. 72 99 .] 2.6 5.2
TYW3 1/1 31 46 .. 211 226 .] 0.6 8
VDRIP 1/1 31 46 .. 1 18 [. -0.6 5.7
Cas_Csm6 1/1 81 101 .. 393 413 .] 0.1 6.2
CaM_bdg_C0 1/1 134 141 .. 22 29 .] 2.5 5
CFEM 1/1 190 199 .. 61 70 .] 2.1 6.5
Crp 1/1 230 240 .. 23 33 .] 2.6 9.1
DUF1997 1/1 283 298 .. 175 189 .] 1.4 5.3
Supt5 1/1 302 313 .. 41 52 .] 2.4 9.9
Pox_ser-thr_kin 1/1 311 343 .. 37 70 .. 2.3 1.8
HTS 1/1 314 328 .. 1 15 [. -1.1 7.1
Ax_dynein_light 1/1 319 341 .. 169 191 .] 1.3 6.4
KNOX2 1/1 330 343 .. 43 56 .] 5.3 1.1
ERO1 1/1 332 346 .. 1 21 [. 1.4 2.3
STAG 1/2 351 365 .. 116 130 .] 3.0 2
MAM1 1/1 380 393 .. 400 413 .] 4.0 0.59
DUF975 1/1 462 476 .. 1 18 [. 2.7 1.4
VWA 1/1 463 501 .. 152 196 .] -0.2 9.6
WaaY 1/1 524 541 .. 1 18 [. 1.6 4.1
Queuosine_synth 1/1 528 537 .. 1 10 [. 0.3 8
TMP-TENI 1/1 553 566 .. 1 14 [. 1.6 4.3
Gtr1_RagA 1/1 555 583 .. 215 238 .] 4.2 0.66
Peptidase_S55 1/1 604 623 .. 109 128 .. 0.8 7.9
zf-DBF 1/1 685 699 .. 35 49 .] 5.6 1
DED 1/1 706 719 .. 1 14 [. 1.5 9.4
DUF1970 1/1 708 726 .. 91 109 .. 3.0 0.49
essB 1/1 708 724 .. 348 364 .] 0.7 7
VHS 1/1 708 738 .. 120 153 .] 2.0 5.3
DUF1002 1/1 710 728 .. 230 248 .] 1.0 7.6
DUF1322 1/1 710 731 .. 1 22 [. 1.2 9.1
Phage_Gp15 1/1 719 733 .. 173 187 .] 1.9 1
UBA_2 1/1 723 734 .. 44 55 .. 2.9 2.8
DUF1972 1/1 810 815 .. 186 191 .] 1.6 3.9
Glucosaminidase 1/1 834 851 .. 132 149 .] 3.7 1.5
DUF1451 1/1 956 983 .. 1 28 [. 1.3 7.8
ATP-synt 1/1 961 971 .. 1 13 [. 2.6 0.66
FerA 1/1 968 982 .. 17 32 .. 3.7 4.7
DUF1926 1/1 1005 1024 .. 32 51 .. 2.4 1.9
Mqo 1/1 1025 1040 .. 211 227 .. -0.6 8.5
SPC25 1/1 1054 1070 .. 1 18 [. 0.3 8.9
T-box 1/1 1137 1146 .. 172 181 .. 1.1 3.4
Formyl_trans_C 1/1 1145 1155 .. 1 11 [. 2.0 5.8
Phage_sheath_1 1/1 1179 1194 .. 681 696 .] -0.9 6.1
Phage_integr_N 1/1 1185 1195 .. 1 11 [. 1.6 8.6
Sas10_Utp3_C 1/1 1233 1244 .. 67 78 .] 3.5 3.9
aPHC 1/1 1280 1287 .. 1 8 [. -0.6 9.4
DUF2213 1/1 1288 1298 .. 1 11 [. 1.4 5.5
STAG 2/2 1289 1312 .. 105 130 .] 0.7 9.3
ATG11 1/1 1304 1325 .. 1 22 [. 0.4 8.8
DUF1113 1/1 1311 1336 .. 225 252 .] 1.5 4.9
RE_NgoPII 1/1 1380 1400 .. 251 273 .] 1.5 5
DUF1195 1/1 1406 1445 .. 1 45 [. 1.7 3.5
Nup153 1/1 1417 1433 .. 539 555 .] 0.4 3.7
GnsAB 1/1 1466 1480 .. 1 15 [. 1.9 7.4
eIF-4B 1/1 1483 1492 .. 1 12 [. -1.7 1.9
DUF867 1/1 1581 1595 .. 1 15 [. 2.2 3.1
GntP_permease 1/1 1603 1623 .. 444 465 .] 0.3 5.8
PC_rep 1/1 1609 1619 .. 1 11 [. 3.6 3.7
DUF2328 1/1 1617 1639 .. 166 188 .] 0.4 5.4
PepSY_TM 1/1 1622 1645 .. 1 34 [] 5.8 2
UPF0147 1/1 1646 1658 .. 75 87 .] 3.7 4.2
Orthopox_F7 1/1 1686 1701 .. 67 82 .] 3.0 1.4
Cw-hydrolase 1/1 1696 1734 .. 1 39 [. 4.0 1.2
Herpes_PAP 1/1 1803 1813 .. 106 116 .. -1.0 5.7
Nitr_red_assoc 1/1 1805 1815 .. 136 146 .] 1.7 2
PKI 1/1 1815 1828 .. 1 14 [. 1.4 6.8
FG-GAP 1/4 1820 1845 .. 1 36 [] 8.8 0.14
Antimicrobial16 1/1 1892 1907 .. 27 42 .] 2.4 5.8
FG-GAP 2/4 1906 1936 .. 1 36 [] 9.4 0.096
TmoB 1/1 1908 1924 .. 1 19 [. 0.8 9.1
Gp49 1/1 1917 1929 .. 1 13 [. 2.7 6.9
FG-GAP 3/4 1976 2001 .. 5 36 .] 12.6 0.011
FG-GAP 4/4 2030 2057 .. 1 36 [] 10.9 0.033
DUF2072 1/1 2065 2079 .. 137 151 .] 1.6 2.8
FlgD 1/1 2067 2093 .. 124 155 .] 1.0 7.2
SIS 1/1 2154 2167 .. 1 14 [. 1.6 9.6
HemolysinCabind 1/3 2192 2202 .. 8 18 .] 7.6 0.4
DUF1767 1/1 2212 2227 .. 90 106 .] 1.8 6.3
EST1_DNA_bind 1/2 2239 2255 .. 59 75 .] 1.0 13
DUF2002 1/1 2260 2272 .. 104 116 .] 1.9 3.1
HemolysinCabind 2/3 2263 2280 .. 1 18 [] 14.9 0.0023
U3_assoc_6 1/1 2296 2311 .. 73 88 .] 1.7 8.8
Lipoprotein_17 1/1 2328 2343 .. 1 16 [. 2.5 6.4
DUF1248 1/1 2341 2351 .. 1 11 [. 3.0 1.1
OstA_C 1/1 2345 2372 .. 416 446 .] -0.2 7.4
Ninjurin 1/1 2362 2380 .. 138 156 .. 1.1 5.1
Shigella_OspC 1/1 2367 2385 .. 1 20 [. -0.1 5.7
Mtr2 1/1 2439 2448 .. 1 10 [. 1.2 4
RYDR_ITPR 1/1 2547 2573 .. 198 229 .] 0.5 7.8
UspB 1/1 2574 2587 .. 60 73 .. 1.6 8.5
HemolysinCabind 3/3 2663 2679 .. 1 18 [] 6.3 0.96
SDH_beta 1/1 2680 2696 .. 143 159 .] 4.2 0.84
BRK 1/1 2802 2822 .. 26 50 .] 3.6 3.8
DUF885 1/1 2841 2853 .. 568 580 .] 3.7 0.4
DUF2599 1/1 2866 2873 .. 1 9 [. 0.0 9
CUT 1/1 2872 2886 .. 6 20 .. 2.6 4.9
Toprim_N 1/1 2889 2924 .. 47 81 .. 2.7 3.8
PSP1 1/1 2916 2929 .. 83 96 .] 1.8 5.4
DUF1108 1/1 2945 2952 .. 79 86 .] 0.9 1.1
CIA30 1/1 2958 2969 .. 199 210 .] 3.1 1.3
Peptidase_U57 1/1 2973 2984 .. 147 158 .. 0.2 8.4
RecO 1/1 2990 3023 .. 226 259 .] 3.6 0.84
DUF1814 1/1 2992 3070 .. 238 299 .] 2.5 1.7
Glyco_hydro_26 1/1 3045 3057 .. 347 359 .] 4.1 0.53
EST1_DNA_bind 2/2 3047 3060 .. 57 71 .. 1.1 12
Alignments of top-scoring domains:
Mad3_BUB1_II: domain 1 of 1, from 8 to 32: score 2.6, E = 5.2
*->KSSlsRnvyKVSLGYkeqqnkvKRHtre<-*
K Sls +++ VS Y +++++ K e
gi|1659248 8 KLSLSQRLSIVSETYDRVNKNNK---KE 32
TYW3: domain 1 of 1, from 31 to 46: score 0.6, E = 8
*->keKLkRLedrleklkk<-*
keKLk +d +e +kk
gi|1659248 31 KEKLKYSYDDIEMIKK 46
VDRIP: domain 1 of 1, from 31 to 46: score -0.6, E = 5.7
*->STkerLLeslDDlElivK<-*
ke+L s DD+E+i K
gi|1659248 31 --KEKLKYSYDDIEMIKK 46
Cas_Csm6: domain 1 of 1, from 81 to 101: score 0.1, E = 6.2
*->leieeedyNyYdrkNkEiikl<-*
l i+ + +N Y+r N+ ii
gi|1659248 81 LAIDAALFNDYERFNELIIYI 101
CaM_bdg_C0: domain 1 of 1, from 134 to 141: score 2.5, E = 5
*->DkWRgNIe<-*
D+WRg ++
gi|1659248 134 DVWRGDLL 141
CFEM: domain 1 of 1, from 190 to 199: score 2.1, E = 6.5
*->visaasslCs<-*
+is+ass+C+
gi|1659248 190 MISYASSFCA 199
Crp: domain 1 of 1, from 230 to 240: score 2.6, E = 9.1
*->lLtrLrekgLI<-*
+L L++kgLI
gi|1659248 230 VLRALQKKGLI 240
DUF1997: domain 1 of 1, from 283 to 298: score 1.4, E = 5.3
*->ltrqLleD.Fhawiae<-*
l+++Ll D +++w +e
gi|1659248 283 LQEKLLVDiYQQWLDE 298
Supt5: domain 1 of 1, from 302 to 313: score 2.4, E = 9.9
*->PdlwkVkckige<-*
P l++V+++i++
gi|1659248 302 PSLLAVRKEIIN 313
Pox_ser-thr_kin: domain 1 of 1, from 311 to 343: score 2.3, E = 1.8
*->vfsqidlnqnWsPsIkllryFknfsketldriae<-*
++ id+ + +P++ llryF ++ e ld i+e
gi|1659248 311 IINTIDIDRH-APEVELLRYFLRKIHEQLDEITE 343
HTS: domain 1 of 1, from 314 to 328: score -1.1, E = 7.1
*->PIkIPddLPAveiLe<-*
+I I+++ P+ve+L+
gi|1659248 314 TIDIDRHAPEVELLR 328
Ax_dynein_light: domain 1 of 1, from 319 to 341: score 1.3, E = 6.4
*->rHadEiafLKkqnqqlkaqLeqi<-*
rHa E++ L++ +++ +qL+ i
gi|1659248 319 RHAPEVELLRYFLRKIHEQLDEI 341
KNOX2: domain 1 of 1, from 330 to 343: score 5.3, E = 1.1
*->FLnkIEtQLqnLck<-*
FL+kI+ QL++++
gi|1659248 330 FLRKIHEQLDEITE 343
ERO1: domain 1 of 1, from 332 to 346: score 1.4, E = 2.3
CS HCCHHHHHHHHCSCCCCEEEE
*->ekIrplLqsLtktdFFRyfKV<-*
+kI+++L+++t+ fKV
gi|1659248 332 RKIHEQLDEITE------FKV 346
STAG: domain 1 of 2, from 351 to 365: score 3.0, E = 2
*->eRvdsLnskLgirke<-*
eR+ds+++kL++ +e
gi|1659248 351 ERIDSIKKKLAVGSE 365
MAM1: domain 1 of 1, from 380 to 393: score 4.0, E = 0.59
*->sRKlfdEqllkrkk<-*
+RK++ E+ll++++
gi|1659248 380 ERKIILESLLQKES 393
DUF975: domain 1 of 1, from 462 to 476: score 2.7, E = 1.4
*->MeqNikvdysrsElKskA<-*
M ikvd +r +lK++A
gi|1659248 462 M---IKVDANRNQLKQMA 476
VWA: domain 1 of 1, from 463 to 501: score -0.2, E = 9.6
CS EEESSSCCHHHHHHHS-SSTCHHHEEEESSCCHHHHH..HHHHHH
*->vGvGgdvdeaeLrliasepcseghvfyvedfdalwlplqdlqeql<-
+ v d+++++L+++a+ f+++++ +++ ++++++
gi|1659248 463 IKV--DANRNQLKQMATLERFLLANFTPRNTPQDL----KIIDNV 501
CS
*
gi|1659248 - -
WaaY: domain 1 of 1, from 524 to 541: score 1.6, E = 4.1
*->MItekkikglsvFvkdNd<-*
MI + k ++ F k Nd
gi|1659248 524 MIEKVKLSEFDYFLKSND 541
Queuosine_synth: domain 1 of 1, from 528 to 537: score 0.3, E = 8
*->MklsdFDYeL<-*
kls+FDY L
gi|1659248 528 VKLSEFDYFL 537
TMP-TENI: domain 1 of 1, from 553 to 566: score 1.6, E = 4.3
*->LYlvTdsqldedll<-*
LYl++d+++++d +
gi|1659248 553 LYLISDPEDNRDVI 566
Gtr1_RagA: domain 1 of 1, from 555 to 583: score 4.2, E = 0.66
*->vreDgneksgli.....lyNiknarkaie<-*
+++D+++ ++i +++++yN k+ + +ie
gi|1659248 555 LISDPEDNRDVIikpndDYNLKSIKDFIE 583
Peptidase_S55: domain 1 of 1, from 604 to 623: score 0.8, E = 7.9
*->NKEFlvknisnkaipValrn<-*
NKE ++++ + +++ Va+r+
gi|1659248 604 NKECIFAHDEGETYQVAYRD 623
zf-DBF: domain 1 of 1, from 685 to 699: score 5.6, E = 1
*->dnykalDdLiaqlaf<-*
+n+ ++D+L+ ++++
gi|1659248 685 ENFLDIDSLLKNSTH 699
DED: domain 1 of 1, from 706 to 719: score 1.5, E = 9.4
CS HHHHHHHHHCTSCH
*->yrvlLleisenLds<-*
yr+lL +is+++ +
gi|1659248 706 YRKLLNSISNDINK 719
DUF1970: domain 1 of 1, from 708 to 726: score 3.0, E = 0.49
*->KLtdsitsqLnnYAesLnD<-*
KL +si+ +n Y esLn+
gi|1659248 708 KLLNSISNDINKYMESLNE 726
essB: domain 1 of 1, from 708 to 724: score 0.7, E = 7
*->ekLdelekeldeYeker<-*
++L+++ ++++Y++++
gi|1659248 708 KLLNSISNDINKYMESL 724
VHS: domain 1 of 1, from 708 to 738: score 2.0, E = 5.3
CS HHHHHHHHH-.......TT-HHHHHHHHHHHHTT
*->eliqeWadafCKhdknkpdlkyisdvyklLKrkG<-*
+l+ + ++++ +k+ ++l+ i+d+y+lL+++
gi|1659248 708 KLLNSISNDI---NKYMESLNEIKDSYHLLPFDV 738
DUF1002: domain 1 of 1, from 710 to 728: score 1.0, E = 7.6
*->lnilnnDygafkkqLnslk<-*
ln ++nD++++ ++Ln +k
gi|1659248 710 LNSISNDINKYMESLNEIK 728
DUF1322: domain 1 of 1, from 710 to 731: score 1.2, E = 9.1
*->MsKRnRDiDKAiAsLaEiakkY<-*
++ Di K + sL+Ei+ Y
gi|1659248 710 LNSISNDINKYMESLNEIKDSY 731
Phage_Gp15: domain 1 of 1, from 719 to 733: score 1.9, E = 1
*->kYldsmrklqakYsL<-*
kY +s+ + ++ Y L
gi|1659248 719 KYMESLNEIKDSYHL 733
UBA_2: domain 1 of 1, from 723 to 734: score 2.9, E = 2.8
*->slNEIkDAYlLv<-*
slNEIkD Y L+
gi|1659248 723 SLNEIKDSYHLL 734
DUF1972: domain 1 of 1, from 810 to 815: score 1.6, E = 3.9
*->IAYGTD<-*
IAYGT+
gi|1659248 810 IAYGTQ 815
Glucosaminidase: domain 1 of 1, from 834 to 851: score 3.7, E = 1.5
*->TDpaYAdklaniieqyyl<-*
TD++Y ++an+ie y+l
gi|1659248 834 TDGVYSFSVANVIEIYKL 851
DUF1451: domain 1 of 1, from 956 to 983: score 1.3, E = 7.8
*->llerlterlklsekeLkkaveqakeylv<-*
++e l + +++ k++++++e+ +ylv
gi|1659248 956 VVELLLKDVRNKIKSVDQLIESYSQYLV 983
ATP-synt: domain 1 of 1, from 961 to 971: score 2.6, E = 0.66
CS --HHHHHHHHHHH
*->AsLKeIrdRIkSV<-*
LK++r++IkSV
gi|1659248 961 --LKDVRNKIKSV 971
FerA: domain 1 of 1, from 968 to 982: score 3.7, E = 4.7
*->lklLDQlIeDcssfpL<-*
+k++DQlIe+ s+ +L
gi|1659248 968 IKSVDQLIESYSQ-YL 982
DUF1926: domain 1 of 1, from 1005 to 1024: score 2.4, E = 1.9
CS EEETTTTEETT--------G
*->lDskslahNyaDvLaRrwEh<-*
+D++s+ N++D++++r+E+
gi|1659248 1005 FDTYSKFENFLDIIRQRPEL 1024
Mqo: domain 1 of 1, from 1025 to 1040: score -0.6, E = 8.5
*->RnsDGtWtVtvkdlnng<-*
RnsD+ W+++v+++ +g
gi|1659248 1025 RNSDN-WQLVVANNATG 1040
SPC25: domain 1 of 1, from 1054 to 1070: score 0.3, E = 8.9
*->dkpVKviNkwDgpavKna<-*
VKv N wD pa+ n+
gi|1659248 1054 PDIVKV-NEWDLPAIANI 1070
T-box: domain 1 of 1, from 1137 to 1146: score 1.1, E = 3.4
*->QNeeITkLKI<-*
+Ne +TkLKI
gi|1659248 1137 HNELVTKLKI 1146
Formyl_trans_C: domain 1 of 1, from 1145 to 1155: score 2.0, E = 5.8
*->kitkedgrIDW<-*
ki +e g+I W
gi|1659248 1145 KIQPENGKIRW 1155
Phage_sheath_1: domain 1 of 1, from 1179 to 1194: score -0.9, E = 6.1
*->EyitFrfviTstylvd<-*
E +t r+ ++s+yl++
gi|1659248 1179 EQLTARLNQFSDYLQT 1194
Phage_integr_N: domain 1 of 1, from 1185 to 1195: score 1.6, E = 8.6
CS HHHHHHHHHHT
*->leqFleyLsle<-*
l+qF++yL+ e
gi|1659248 1185 LNQFSDYLQTE 1195
Sas10_Utp3_C: domain 1 of 1, from 1233 to 1244: score 3.5, E = 3.9
*->GIkknvvKSvKl<-*
GI++nv+ S+K
gi|1659248 1233 GIRTNVSASTKA 1244
aPHC: domain 1 of 1, from 1280 to 1287: score -0.6, E = 9.4
*->pgrwgeqt<-*
++rwge+t
gi|1659248 1280 WNRWGEIT 1287
DUF2213: domain 1 of 1, from 1288 to 1298: score 1.4, E = 5.5
*->stRsitadGfL<-*
++R+++++G+L
gi|1659248 1288 TERKKDINGRL 1298
STAG: domain 2 of 2, from 1289 to 1312: score 0.7, E = 9.3
*->EkkKsrdnraneRvdsLnskLgirke<-*
E+kK ++r +dsL+ kL i+ +
gi|1659248 1289 ERKKDINGR-LNNIDSLLDKL-ITRQ 1312
ATG11: domain 1 of 1, from 1304 to 1325: score 0.4, E = 8.8
*->fedaVikrfkDvetLakkLqKe<-*
+ d+ i+r +v++L+kk+q++
gi|1659248 1304 LLDKLITRQLSVNQLNKKQQRK 1325
DUF1113: domain 1 of 1, from 1311 to 1336: score 1.5, E = 4.9
*->kelllfllnfnqrRllknsFpklkyslk<-*
++l+ ++ln+ q+R l+++Fp l k
gi|1659248 1311 RQLSVNQLNKKQQRKLAEIFPQLT--DK 1336
RE_NgoPII: domain 1 of 1, from 1380 to 1400: score 1.5, E = 5
*->tDkleilaedNkkleikDvrIKn<-*
tD+ +i + d + DvrIK+
gi|1659248 1380 TDRWRITETDG--NTLQDVRIKS 1400
DUF1195: domain 1 of 1, from 1406 to 1445: score 1.7, E = 3.5
*->mkaahhhhdsdalPatttsipasgtsaangkketgysalFGKGRY<-
+ a + h+ ++ P +ts+p +++n k+ t+ +FG+ +Y
gi|1659248 1406 TDLATYPHSITSDPDLKTSAPEL--KTSNPKARTA---IFGRFGY 1445
*
gi|1659248 - -
Nup153: domain 1 of 1, from 1417 to 1433: score 0.4, E = 3.7
*->SsPspkreatqktansP<-*
S P +k++a++++ + P
gi|1659248 1417 SDPDLKTSAPELKTSNP 1433
GnsAB: domain 1 of 1, from 1466 to 1480: score 1.9, E = 7.4
*->MniEelkkkaEeeIa<-*
M+ +l++k EeeI+
gi|1659248 1466 MSNGDLTEKQEEEIQ 1480
eIF-4B: domain 1 of 1, from 1483 to 1492: score -1.7, E = 1.9
*->MsKpWGGiGiGA<-*
++ +WGGi GA
gi|1659248 1483 LAMAWGGI--GA 1492
DUF867: domain 1 of 1, from 1581 to 1595: score 2.2, E = 3.1
*->YssFeELkenetegk<-*
Y+ F+ L+ ++++++
gi|1659248 1581 YHAFSQLATETDPHV 1595
GntP_permease: domain 1 of 1, from 1603 to 1623: score 0.3, E = 5.8
*->TvleTIlSvvGLifvLiLlsLv<-*
+v +TI++++GL++ + + +++
gi|1659248 1603 GVFSTINATIGLGVAF-AMAMG 1623
PC_rep: domain 1 of 1, from 1609 to 1619: score 3.6, E = 3.7
*->gAilaLGliha<-*
+A+++LG+++a
gi|1659248 1609 NATIGLGVAFA 1619
DUF2328: domain 1 of 1, from 1617 to 1639: score 0.4, E = 5.4
*->lLAreaGgtisveiteeavvlsa<-*
+ A ++Ggt + +++++++ l++
gi|1659248 1617 AFAMAMGGTAATAAGPAGIALAF 1639
PepSY_TM: domain 1 of 1, from 1622 to 1645: score 5.8, E = 2
*->lgdlHrgrfggvallglllglllllllltGlvlw<-*
+g+ ++ ++g+++++l++t+++++
gi|1659248 1622 MGG----------TAATAAGPAGIALAFTMIIVG 1645
UPF0147: domain 1 of 1, from 1646 to 1658: score 3.7, E = 4.2
*->dIWeiiSeLErik<-*
dI++ +S+ Eri+
gi|1659248 1646 DIYSAVSQIERIR 1658
Orthopox_F7: domain 1 of 1, from 1686 to 1701: score 3.0, E = 1.4
*->LDiKRRYRHaiEsvYF<-*
LD + RY ++EsvY
gi|1659248 1686 LDNQIRYNQTMESVYQ 1701
Cw-hydrolase: domain 1 of 1, from 1696 to 1734: score 4.0, E = 1.2
*->mlsalilselsypAllLaeqqvhqrfvhpgPLvLkaapl<-*
m s+ + + y+All +q v+ f g vLka p+
gi|1659248 1696 MESVYQRQRDYYEALLASKQGVDTLFYSRGEAVLKAIPF 1734
Herpes_PAP: domain 1 of 1, from 1803 to 1813: score -1.0, E = 5.7
CS EEHHHHHHHHH
*->vqaKNLqQALs<-*
+q KNL+QA+s
gi|1659248 1803 LQNKNLHQAFS 1813
Nitr_red_assoc: domain 1 of 1, from 1805 to 1815: score 1.7, E = 2
*->NhNFlpAlqEF<-*
N+N+ A++E+
gi|1659248 1805 NKNLHQAFSEL 1815
PKI: domain 1 of 1, from 1815 to 1828: score 1.4, E = 6.8
*->tDVEStyadFisSg<-*
D+ Sty+ Fi S+
gi|1659248 1815 LDIDSTYSPFILSA 1828
FG-GAP: domain 1 of 4, from 1820 to 1845: score 8.8, E = 0.14
CS CCSCEEEC -TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvyll<-*
++s+ + D++++G++D++v +++ +
gi|1659248 1820 TYSPFILSaDVDRNGLNDFIV-------INeK-----Y 1845
Antimicrobial16: domain 1 of 1, from 1892 to 1907: score 2.4, E = 5.8
*->WEelLyeliliKfkit<-*
WE l + + + Kf+
gi|1659248 1892 WEKLFHAIEVDKFNEV 1907
FG-GAP: domain 2 of 4, from 1906 to 1936: score 9.4, E = 0.096
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+ +++gD+nGD +lv+ +++d+ ++y++
gi|1659248 1906 EVVFPVLGDFNGDNVFELVI-------FHdDkMTTYHY 1936
TmoB: domain 1 of 1, from 1908 to 1924: score 0.8, E = 9.1
CS --EEEEEEEETT-SBEEEE
*->MAlFPiisnFegDFVlQLV<-*
FP+ + F gD V LV
gi|1659248 1908 --VFPVLGDFNGDNVFELV 1924
Gp49: domain 1 of 1, from 1917 to 1929: score 2.7, E = 6.9
*->GeGvfELRidygp<-*
G+ vfEL i +++
gi|1659248 1917 GDNVFELVIFHDD 1929
FG-GAP: domain 3 of 4, from 1976 to 2001: score 12.6, E = 0.011
CS EEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->vaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+++gD+n+DG++D+++ +++g +l
gi|1659248 1976 SLVGDINNDGFDDILL-------LNkSGDMLHL 2001
FG-GAP: domain 4 of 4, from 2030 to 2057: score 10.9, E = 0.033
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+ s++ ++Dln DG Dlv+ + +d + ++
gi|1659248 2030 HRSQLQLTDLNKDGGLDLVI-------ILnD--GIYY 2057
DUF2072: domain 1 of 1, from 2065 to 2079: score 1.6, E = 2.8
*->EGtYviDLpSalkkk<-*
+G Y+ D pS+++k
gi|1659248 2065 DGEYHFDTPSMVNKI 2079
FlgD: domain 1 of 1, from 2067 to 2093: score 1.0, E = 7.2
*->evgLpsaAdevtvtikDaaGqvvnvelVrtid<-*
e+ ++ ++ ++tik+++G+ Vr +
gi|1659248 2067 EYHFDTPSMVNKITIKNEGGDS-----VRYQQ 2093
SIS: domain 1 of 1, from 2154 to 2167: score 1.6, E = 9.6
CS HHHHSEEEEEE-CH
*->klakakrIyliGaG<-*
++k+k+I++iG+G
gi|1659248 2154 GYHKKKNIFTIGSG 2167
HemolysinCabind: domain 1 of 3, from 2192 to 2202: score 7.6, E = 0.4
CS EEEEESSCGEE
*->tLyGgaGnDtl<-*
+L+Gg+GnDt
gi|1659248 2192 ILSGGEGNDTV 2202
DUF1767: domain 1 of 1, from 2212 to 2227: score 1.8, E = 6.3
*->vnsirDIsqPlynqlLs<-*
++si+DIs +y+q+ +
gi|1659248 2212 IDSIIDISNGYYSQV-N 2227
EST1_DNA_bind: domain 1 of 2, from 2239 to 2255: score 1.0, E = 13
*->DYdkifssedipDrLvG<-*
D++ i++ e++ D ++G
gi|1659248 2239 DFENILGHENVNDTIIG 2255
DUF2002: domain 1 of 1, from 2260 to 2272: score 1.9, E = 3.1
*->ryLnrlFGDEKtd<-*
+yLn++ GD+K
gi|1659248 2260 NYLNGMGGDDKIW 2272
HemolysinCabind: domain 2 of 3, from 2263 to 2280: score 14.9, E = 0.0023
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +G+D + G++GnD+l
gi|1659248 2263 NGMGGDDKIWGNGGNDLL 2280
U3_assoc_6: domain 1 of 1, from 2296 to 2311: score 1.7, E = 8.8
*->kkfknsisdysiqrrI<-*
+++ +s+++ s+q rI
gi|1659248 2296 YHILKSTHEKSLQIRI 2311
Lipoprotein_17: domain 1 of 1, from 2328 to 2343: score 2.5, E = 6.4
*->eLeeeinkIssielke<-*
Le ++n+I+siel +
gi|1659248 2328 FLEHKLNQIKSIELDN 2343
DUF1248: domain 1 of 1, from 2341 to 2351: score 3.0, E = 1.1
*->rddVDvviNPd<-*
+d++Dv+iN++
gi|1659248 2341 LDNIDVLININ 2351
OstA_C: domain 1 of 1, from 2345 to 2372: score -0.2, E = 7.4
*->ddpdyntatnsgqdkisqiglsaqwplarnW<-*
d +++++++n++ + qi+l++ +++++n
gi|1659248 2345 DVLININNDNGF---MTQIRLVGVYNINNNQ 2372
Ninjurin: domain 1 of 1, from 2362 to 2380: score 1.1, E = 5.1
*->figrLnlnrvedqrrlnrl<-*
+ g +n+n++++q ln++
gi|1659248 2362 LVGVYNINNNQKQQVLNFT 2380
Shigella_OspC: domain 1 of 1, from 2367 to 2385: score -0.1, E = 5.7
*->vEisnHqkklPLnkkHHtvD<-*
i n qk+ Ln + tvD
gi|1659248 2367 -NINNNQKQQVLNFTIQTVD 2385
Mtr2: domain 1 of 1, from 2439 to 2448: score 1.2, E = 4
CS EECCTT....
*->ngqtQqQVTH<-*
ng +QqQVTH
gi|1659248 2439 NGYQQQQVTH 2448
RYDR_ITPR: domain 1 of 1, from 2547 to 2573: score 0.5, E = 7.8
CS XXXXXXXXXXX.....XXXXXXXXXXXXXXXX
*->lickevlnpGesVEENaDlLiqtnlraseasl<-*
l+c +v++++ DlL+++++ ++
gi|1659248 2547 LLC-DVIVERS----DDDLLLRYRDQPEKHQS 2573
UspB: domain 1 of 1, from 2574 to 2587: score 1.6, E = 8.5
*->vRLfhYIksqeYlh<-*
+RL++Y + ++Y h
gi|1659248 2574 IRLVNYMNDERYRH 2587
HemolysinCabind: domain 3 of 3, from 2663 to 2679: score 6.3, E = 0.96
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +G L Gg+G+Dt+
gi|1659248 2663 RGHEGT-MLKGGGGDDTY 2679
SDH_beta: domain 1 of 1, from 2680 to 2696: score 4.2, E = 0.84
*->YySiGGGfIvdeehfGl<-*
YyS G G+I + +++Gl
gi|1659248 2680 YYSAGSGAINIADTSGL 2696
BRK: domain 1 of 1, from 2802 to 2822: score 3.6, E = 3.8
*->klkdLerWLqenPgYevdlafiPrs<-*
+l+++++W+ nP Y+v+ + +
gi|1659248 2802 QLRTIKAWVTKNPIYDVA----DLD 2822
DUF885: domain 1 of 1, from 2841 to 2853: score 3.7, E = 0.4
*->PLdvLEqkvdrwI<-*
PL++ Eqk+d+++
gi|1659248 2841 PLPLIEQKIDAFF 2853
DUF2599: domain 1 of 1, from 2866 to 2873: score 0.0, E = 9
*->IdhatWaqw<-*
+h+tW+q+
gi|1659248 2866 -EHVTWIQR 2873
CUT: domain 1 of 1, from 2872 to 2886: score 2.6, E = 4.9
CS XXX---SHHHHHHHH
*->mneeldTaeIarrVk<-*
+ ee dT++Ia++Vk
gi|1659248 2872 QREEFDTVDIAKWVK 2886
Toprim_N: domain 1 of 1, from 2889 to 2924: score 2.7, E = 3.8
CS HHHHHT-HHHHHTTT-EE-SST..T--EET TTTEE
*->fLkkkgfdeelLleaGLlsknenggkfyDr.FrnRi<-*
+L++++ + lL+++GLl+++ +k D++F+nRi
gi|1659248 2889 HLRSQNEINYLLEQLGLLKESPLSDKALDFtFKNRI 2924
PSP1: domain 1 of 1, from 2916 to 2929: score 1.8, E = 5.4
*->LakvfktRIELRQI<-*
L ++fk RI L+Q
gi|1659248 2916 LDFTFKNRIDLAQA 2929
DUF1108: domain 1 of 1, from 2945 to 2952: score 0.9, E = 1.1
*->LINLVMkW<-*
LINL Mk
gi|1659248 2945 LINLAMKY 2952
CIA30: domain 1 of 1, from 2958 to 2969: score 3.1, E = 1.3
*->GpFeLeidsIka<-*
G+FeL+i I++
gi|1659248 2958 GHFELLISNIQV 2969
Peptidase_U57: domain 1 of 1, from 2973 to 2984: score 0.2, E = 8.4
*->vGvhvsEkEqPE<-*
+Gv+vsE EqP+
gi|1659248 2973 YGVVVSESEQPL 2984
RecO: domain 1 of 1, from 2990 to 3023: score 3.6, E = 0.84
*->akLkplldskleesslvERlyelsrsflprrelL<-*
+ L +++ +k +++ v Rl e + sf++ +lL
gi|1659248 2990 IDLRQYFNQKNLTKDHVGRLAEHDMSFDELTLLL 3023
DUF1814: domain 1 of 1, from 2992 to 3070: score 2.5, E = 1.7
*->ikrtflerllalhkflfysrkdedfdgil.aeaa.gllllapwlefl
++ f +++l++++ +++++d fd+ + ++ + ++a+++++
gi|1659248 2992 LRQYFNQKNLTKDHVGRLAEHDMSFDELTlLLDKnIPIEQAFTQRLQ 3038
kei.la..............ltedyeeflesl<-*
++++++ ++++ ++++ + +d++ ++e +
gi|1659248 3039 TQLgPLklfndervfnkgdvFDQDISQLAEAM 3070
Glyco_hydro_26: domain 1 of 1, from 3045 to 3057: score 4.1, E = 0.53
CS H..........ST
*->alynsswVlnkDE<-*
+l+n+++V nk+
gi|1659248 3045 KLFNDERVFNKGD 3057
EST1_DNA_bind: domain 2 of 2, from 3047 to 3060: score 1.1, E = 12
*->FNDYdkifssedipD<-*
FND + +f+++d+ D
gi|1659248 3047 FND-ERVFNKGDVFD 3060
//