hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 167468166.fa
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Query sequence: gi|167468166|ref|ZP_02332870.1|
Accession: [none]
Description: virulence determinant [Yersinia pestis FV-1]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FG-GAP FG-GAP repeat 41.7 3.4e-11 4
HemolysinCabind Hemolysin-type calcium-binding repeat 28.8 1.4e-07 3
DUF885 Bacterial protein of unknown function 3.7 0.4 1
DUF1970 Domain of unknown function (DUF1970) 3.0 0.49 1
Glyco_hydro_26 Glycosyl hydrolase family 26 4.1 0.53 1
MAM1 Monopolin complex protein MAM1 4.0 0.59 1
Gtr1_RagA Gtr1/RagA G protein conserved region 4.2 0.66 1
ATP-synt ATP synthase 2.6 0.66 1
RecO Recombination protein O 3.6 0.84 1
SDH_beta Serine dehydratase beta chain 4.2 0.84 1
zf-DBF DBF zinc finger 5.6 1 1
Phage_Gp15 Bacteriophage Gp15 protein 1.9 1 1
DUF1248 Protein of unknown function (DUF1248) 3.0 1.1 1
KNOX2 KNOX2 domain 5.3 1.1 1
DUF1108 Protein of unknown function (DUF1108) 0.9 1.1 1
Cw-hydrolase Cell wall-associated hydrolase 4.0 1.2 1
STAG STAG domain 3.7 1.3 2
CIA30 Complex I intermediate-associated pro 3.1 1.3 1
Orthopox_F7 Orthopoxvirus F7 protein 3.0 1.4 1
DUF975 Protein of unknown function (DUF975) 2.7 1.4 1
Glucosaminidase Mannosyl-glycoprotein endo-beta-N-ace 3.7 1.5 1
DUF1814 Domain of unknown function (DUF1814) 2.5 1.7 1
Pox_ser-thr_kin Poxvirus serine/threonine protein kin 2.3 1.8 1
eIF-4B Plant specific eukaryotic initiation -1.7 1.9 1
DUF1926 Domain of unknown function (DUF1926) 2.4 1.9 1
PepSY_TM PepSY-associated TM helix 5.8 2 1
Nitr_red_assoc Conserved nitrate reductase-associate 1.7 2 1
ERO1 Endoplasmic Reticulum Oxidoreductin 1 1.4 2.3 1
UBA_2 Ubiquitin associated domain (UBA) 2.9 2.8 1
DUF2072 Zn-ribbon containing protein (DUF2072 1.6 2.8 1
DUF867 Protein of unknown function (DUF867) 2.2 3.1 1
DUF2002 Protein of unknown function (DUF2002) 1.9 3.1 1
T-box T-box 1.1 3.4 1
DUF1195 Protein of unknown function (DUF1195) 1.7 3.5 1
Nup153 Nucleoporin Nup153-like 0.4 3.7 1
PC_rep Proteasome/cyclosome repeat 3.6 3.7 1
BRK BRK domain 3.6 3.8 1
Toprim_N DNA primase catalytic core, N-termina 2.7 3.8 1
DUF1972 Domain of unknown function (DUF1972) 1.6 3.9 1
Sas10_Utp3_C Sas10 C-terminal domain 3.5 3.9 1
Mtr2 Nuclear pore RNA shuttling protein Mt 1.2 4 1
WaaY Lipopolysaccharide core biosynthesis 1.6 4.1 1
UPF0147 Uncharacterised protein family (UPF01 3.7 4.2 1
TMP-TENI Thiamine monophosphate synthase/TENI 1.6 4.3 1
FerA FerA (NUC095) domain 3.7 4.7 1
DUF1113 Protein of unknown function (DUF1113) 1.5 4.9 1
CUT CUT domain 2.6 4.9 1
CaM_bdg_C0 Calmodulin-binding domain C0 of NMDA 2.5 5 1
RE_NgoPII NgoPII restriction endonuclease 1.5 5 1
Ninjurin Ninjurin 1.1 5.1 1
VHS VHS domain 2.0 5.3 1
DUF1997 Protein of unknown function (DUF1997) 1.4 5.3 1
PSP1 PSP1 C-terminal conserved region 1.8 5.4 1
DUF2328 Uncharacterized protein conserved in 0.4 5.4 1
EST1_DNA_bind Est1 DNA/RNA binding domain 2.1 5.5 2
DUF2213 Uncharacterized protein conserved in 1.4 5.5 1
Herpes_PAP Herpesvirus polymerase accessory prot -1.0 5.7 1
Shigella_OspC Shigella flexneri OspC protein -0.1 5.7 1
Antimicrobial16 Double glycine cleavage site bacterio 2.4 5.8 1
GntP_permease GntP family permease 0.3 5.8 1
Formyl_trans_C Formyl transferase, C-terminal domain 2.0 5.8 1
Phage_sheath_1 Phage tail sheath protein -0.9 6.1 1
DUF1767 Domain of unknown function (DUF1767) 1.8 6.3 1
Ax_dynein_light Axonemal dynein light chain 1.3 6.4 1
Lipoprotein_17 Lipoprotein associated domain 2.5 6.4 1
CFEM CFEM domain 2.1 6.5 1
PKI cAMP-dependent protein kinase inhibit 1.4 6.8 1
Gp49 Phage derived protein Gp49-like (DUF8 2.7 6.9 1
essB Predicted membrane protein essB 0.7 7 1
HTS Homoserine O-succinyltransferase -1.1 7.1 1
FlgD Flagellar hook capping protein 1.0 7.2 1
GnsAB GnsA/GnsB family 1.9 7.4 1
OstA_C Organic solvent tolerance protein -0.2 7.4 1
DUF1002 Protein of unknown function (DUF1002) 1.0 7.6 1
DUF1451 Protein of unknown function (DUF1451) 1.3 7.8 1
RYDR_ITPR RIH domain 0.5 7.8 1
Peptidase_S55 SpoIVB peptidase S55 0.8 7.9 1
Queuosine_synth Queuosine biosynthesis protein 0.3 8 1
Peptidase_U57 YabG peptidase U57 0.2 8.4 1
Mqo Malate:quinone oxidoreductase (Mqo) -0.6 8.5 1
UspB Universal stress protein B (UspB) 1.6 8.5 1
Phage_integr_N Phage integrase, N-terminal SAM-like 1.6 8.6 1
ATG11 Autophagy-related protein 11 0.4 8.8 1
U3_assoc_6 U3 small nucleolar RNA-associated pro 1.7 8.8 1
SPC25 Microsomal signal peptidase 25 kDa su 0.3 8.9 1
DUF2599 Protein of unknown function (DUF2599) 0.0 9 1
TmoB Toluene-4-monooxygenase system protei 0.8 9.1 1
DUF1322 Protein of unknown function (DUF1322) 1.2 9.1 1
Crp Bacterial regulatory proteins, crp fa 2.6 9.1 1
DED Death effector domain 1.5 9.4 1
aPHC Alkaline phytoceramidase (aPHC) -0.6 9.4 1
SIS SIS domain 1.6 9.6 1
VWA von Willebrand factor type A domain -0.2 9.6 1
Supt5 Supt5 repeat 2.4 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CaM_bdg_C0 1/1 14 21 .. 22 29 .] 2.5 5
CFEM 1/1 70 79 .. 61 70 .] 2.1 6.5
Crp 1/1 110 120 .. 23 33 .] 2.6 9.1
DUF1997 1/1 163 178 .. 175 189 .] 1.4 5.3
Supt5 1/1 182 193 .. 41 52 .] 2.4 9.9
Pox_ser-thr_kin 1/1 191 223 .. 37 70 .. 2.3 1.8
HTS 1/1 194 208 .. 1 15 [. -1.1 7.1
Ax_dynein_light 1/1 199 221 .. 169 191 .] 1.3 6.4
KNOX2 1/1 210 223 .. 43 56 .] 5.3 1.1
ERO1 1/1 212 226 .. 1 21 [. 1.4 2.3
STAG 1/2 231 245 .. 116 130 .] 3.0 2
MAM1 1/1 260 273 .. 400 413 .] 4.0 0.59
DUF975 1/1 342 356 .. 1 18 [. 2.7 1.4
VWA 1/1 343 381 .. 152 196 .] -0.2 9.6
WaaY 1/1 404 421 .. 1 18 [. 1.6 4.1
Queuosine_synth 1/1 408 417 .. 1 10 [. 0.3 8
TMP-TENI 1/1 433 446 .. 1 14 [. 1.6 4.3
Gtr1_RagA 1/1 435 463 .. 215 238 .] 4.2 0.66
Peptidase_S55 1/1 484 503 .. 109 128 .. 0.8 7.9
zf-DBF 1/1 565 579 .. 35 49 .] 5.6 1
DED 1/1 586 599 .. 1 14 [. 1.5 9.4
DUF1970 1/1 588 606 .. 91 109 .. 3.0 0.49
essB 1/1 588 604 .. 348 364 .] 0.7 7
VHS 1/1 588 618 .. 120 153 .] 2.0 5.3
DUF1002 1/1 590 608 .. 230 248 .] 1.0 7.6
DUF1322 1/1 590 611 .. 1 22 [. 1.2 9.1
Phage_Gp15 1/1 599 613 .. 173 187 .] 1.9 1
UBA_2 1/1 603 614 .. 44 55 .. 2.9 2.8
DUF1972 1/1 690 695 .. 186 191 .] 1.6 3.9
Glucosaminidase 1/1 714 731 .. 132 149 .] 3.7 1.5
DUF1451 1/1 836 863 .. 1 28 [. 1.3 7.8
ATP-synt 1/1 841 851 .. 1 13 [. 2.6 0.66
FerA 1/1 848 862 .. 17 32 .. 3.7 4.7
DUF1926 1/1 885 904 .. 32 51 .. 2.4 1.9
Mqo 1/1 905 920 .. 211 227 .. -0.6 8.5
SPC25 1/1 934 950 .. 1 18 [. 0.3 8.9
T-box 1/1 1017 1026 .. 172 181 .. 1.1 3.4
Formyl_trans_C 1/1 1025 1035 .. 1 11 [. 2.0 5.8
Phage_sheath_1 1/1 1059 1074 .. 681 696 .] -0.9 6.1
Phage_integr_N 1/1 1065 1075 .. 1 11 [. 1.6 8.6
Sas10_Utp3_C 1/1 1113 1124 .. 67 78 .] 3.5 3.9
aPHC 1/1 1160 1167 .. 1 8 [. -0.6 9.4
DUF2213 1/1 1168 1178 .. 1 11 [. 1.4 5.5
STAG 2/2 1169 1192 .. 105 130 .] 0.7 9.3
ATG11 1/1 1184 1205 .. 1 22 [. 0.4 8.8
DUF1113 1/1 1191 1216 .. 225 252 .] 1.5 4.9
RE_NgoPII 1/1 1260 1280 .. 251 273 .] 1.5 5
DUF1195 1/1 1286 1325 .. 1 45 [. 1.7 3.5
Nup153 1/1 1297 1313 .. 539 555 .] 0.4 3.7
GnsAB 1/1 1346 1360 .. 1 15 [. 1.9 7.4
eIF-4B 1/1 1363 1372 .. 1 12 [. -1.7 1.9
DUF867 1/1 1461 1475 .. 1 15 [. 2.2 3.1
GntP_permease 1/1 1483 1503 .. 444 465 .] 0.3 5.8
PC_rep 1/1 1489 1499 .. 1 11 [. 3.6 3.7
DUF2328 1/1 1497 1519 .. 166 188 .] 0.4 5.4
PepSY_TM 1/1 1502 1525 .. 1 34 [] 5.8 2
UPF0147 1/1 1526 1538 .. 75 87 .] 3.7 4.2
Orthopox_F7 1/1 1566 1581 .. 67 82 .] 3.0 1.4
Cw-hydrolase 1/1 1576 1614 .. 1 39 [. 4.0 1.2
Herpes_PAP 1/1 1683 1693 .. 106 116 .. -1.0 5.7
Nitr_red_assoc 1/1 1685 1695 .. 136 146 .] 1.7 2
PKI 1/1 1695 1708 .. 1 14 [. 1.4 6.8
FG-GAP 1/4 1700 1725 .. 1 36 [] 8.8 0.14
Antimicrobial16 1/1 1772 1787 .. 27 42 .] 2.4 5.8
FG-GAP 2/4 1786 1816 .. 1 36 [] 9.4 0.096
TmoB 1/1 1788 1804 .. 1 19 [. 0.8 9.1
Gp49 1/1 1797 1809 .. 1 13 [. 2.7 6.9
FG-GAP 3/4 1856 1881 .. 5 36 .] 12.6 0.011
FG-GAP 4/4 1910 1937 .. 1 36 [] 10.9 0.033
DUF2072 1/1 1945 1959 .. 137 151 .] 1.6 2.8
FlgD 1/1 1947 1973 .. 124 155 .] 1.0 7.2
SIS 1/1 2034 2047 .. 1 14 [. 1.6 9.6
HemolysinCabind 1/3 2072 2082 .. 8 18 .] 7.6 0.4
DUF1767 1/1 2092 2107 .. 90 106 .] 1.8 6.3
EST1_DNA_bind 1/2 2119 2135 .. 59 75 .] 1.0 13
DUF2002 1/1 2140 2152 .. 104 116 .] 1.9 3.1
HemolysinCabind 2/3 2143 2160 .. 1 18 [] 14.9 0.0023
U3_assoc_6 1/1 2176 2191 .. 73 88 .] 1.7 8.8
Lipoprotein_17 1/1 2208 2223 .. 1 16 [. 2.5 6.4
DUF1248 1/1 2221 2231 .. 1 11 [. 3.0 1.1
OstA_C 1/1 2225 2252 .. 416 446 .] -0.2 7.4
Ninjurin 1/1 2242 2260 .. 138 156 .. 1.1 5.1
Shigella_OspC 1/1 2247 2265 .. 1 20 [. -0.1 5.7
Mtr2 1/1 2319 2328 .. 1 10 [. 1.2 4
RYDR_ITPR 1/1 2427 2453 .. 198 229 .] 0.5 7.8
UspB 1/1 2454 2467 .. 60 73 .. 1.6 8.5
HemolysinCabind 3/3 2543 2559 .. 1 18 [] 6.3 0.96
SDH_beta 1/1 2560 2576 .. 143 159 .] 4.2 0.84
BRK 1/1 2682 2702 .. 26 50 .] 3.6 3.8
DUF885 1/1 2721 2733 .. 568 580 .] 3.7 0.4
DUF2599 1/1 2746 2753 .. 1 9 [. 0.0 9
CUT 1/1 2752 2766 .. 6 20 .. 2.6 4.9
Toprim_N 1/1 2769 2804 .. 47 81 .. 2.7 3.8
PSP1 1/1 2796 2809 .. 83 96 .] 1.8 5.4
DUF1108 1/1 2825 2832 .. 79 86 .] 0.9 1.1
CIA30 1/1 2838 2849 .. 199 210 .] 3.1 1.3
Peptidase_U57 1/1 2853 2864 .. 147 158 .. 0.2 8.4
RecO 1/1 2870 2903 .. 226 259 .] 3.6 0.84
DUF1814 1/1 2872 2950 .. 238 299 .] 2.5 1.7
Glyco_hydro_26 1/1 2925 2937 .. 347 359 .] 4.1 0.53
EST1_DNA_bind 2/2 2927 2940 .. 57 71 .. 1.1 12
Alignments of top-scoring domains:
CaM_bdg_C0: domain 1 of 1, from 14 to 21: score 2.5, E = 5
*->DkWRgNIe<-*
D+WRg ++
gi|1674681 14 DVWRGDLL 21
CFEM: domain 1 of 1, from 70 to 79: score 2.1, E = 6.5
*->visaasslCs<-*
+is+ass+C+
gi|1674681 70 MISYASSFCA 79
Crp: domain 1 of 1, from 110 to 120: score 2.6, E = 9.1
*->lLtrLrekgLI<-*
+L L++kgLI
gi|1674681 110 VLRALQKKGLI 120
DUF1997: domain 1 of 1, from 163 to 178: score 1.4, E = 5.3
*->ltrqLleD.Fhawiae<-*
l+++Ll D +++w +e
gi|1674681 163 LQEKLLVDiYQQWLDE 178
Supt5: domain 1 of 1, from 182 to 193: score 2.4, E = 9.9
*->PdlwkVkckige<-*
P l++V+++i++
gi|1674681 182 PSLLAVRKEIIN 193
Pox_ser-thr_kin: domain 1 of 1, from 191 to 223: score 2.3, E = 1.8
*->vfsqidlnqnWsPsIkllryFknfsketldriae<-*
++ id+ + +P++ llryF ++ e ld i+e
gi|1674681 191 IINTIDIDRH-APEVELLRYFLRKIHEQLDEITE 223
HTS: domain 1 of 1, from 194 to 208: score -1.1, E = 7.1
*->PIkIPddLPAveiLe<-*
+I I+++ P+ve+L+
gi|1674681 194 TIDIDRHAPEVELLR 208
Ax_dynein_light: domain 1 of 1, from 199 to 221: score 1.3, E = 6.4
*->rHadEiafLKkqnqqlkaqLeqi<-*
rHa E++ L++ +++ +qL+ i
gi|1674681 199 RHAPEVELLRYFLRKIHEQLDEI 221
KNOX2: domain 1 of 1, from 210 to 223: score 5.3, E = 1.1
*->FLnkIEtQLqnLck<-*
FL+kI+ QL++++
gi|1674681 210 FLRKIHEQLDEITE 223
ERO1: domain 1 of 1, from 212 to 226: score 1.4, E = 2.3
CS HCCHHHHHHHHCSCCCCEEEE
*->ekIrplLqsLtktdFFRyfKV<-*
+kI+++L+++t+ fKV
gi|1674681 212 RKIHEQLDEITE------FKV 226
STAG: domain 1 of 2, from 231 to 245: score 3.0, E = 2
*->eRvdsLnskLgirke<-*
eR+ds+++kL++ +e
gi|1674681 231 ERIDSIKKKLAVGSE 245
MAM1: domain 1 of 1, from 260 to 273: score 4.0, E = 0.59
*->sRKlfdEqllkrkk<-*
+RK++ E+ll++++
gi|1674681 260 ERKIILESLLQKES 273
DUF975: domain 1 of 1, from 342 to 356: score 2.7, E = 1.4
*->MeqNikvdysrsElKskA<-*
M ikvd +r +lK++A
gi|1674681 342 M---IKVDANRNQLKQMA 356
VWA: domain 1 of 1, from 343 to 381: score -0.2, E = 9.6
CS EEESSSCCHHHHHHHS-SSTCHHHEEEESSCCHHHHH..HHHHHH
*->vGvGgdvdeaeLrliasepcseghvfyvedfdalwlplqdlqeql<-
+ v d+++++L+++a+ f+++++ +++ ++++++
gi|1674681 343 IKV--DANRNQLKQMATLERFLLANFTPRNTPQDL----KIIDNV 381
CS
*
gi|1674681 - -
WaaY: domain 1 of 1, from 404 to 421: score 1.6, E = 4.1
*->MItekkikglsvFvkdNd<-*
MI + k ++ F k Nd
gi|1674681 404 MIEKVKLSEFDYFLKSND 421
Queuosine_synth: domain 1 of 1, from 408 to 417: score 0.3, E = 8
*->MklsdFDYeL<-*
kls+FDY L
gi|1674681 408 VKLSEFDYFL 417
TMP-TENI: domain 1 of 1, from 433 to 446: score 1.6, E = 4.3
*->LYlvTdsqldedll<-*
LYl++d+++++d +
gi|1674681 433 LYLISDPEDNRDVI 446
Gtr1_RagA: domain 1 of 1, from 435 to 463: score 4.2, E = 0.66
*->vreDgneksgli.....lyNiknarkaie<-*
+++D+++ ++i +++++yN k+ + +ie
gi|1674681 435 LISDPEDNRDVIikpndDYNLKSIKDFIE 463
Peptidase_S55: domain 1 of 1, from 484 to 503: score 0.8, E = 7.9
*->NKEFlvknisnkaipValrn<-*
NKE ++++ + +++ Va+r+
gi|1674681 484 NKECIFAHDEGETYQVAYRD 503
zf-DBF: domain 1 of 1, from 565 to 579: score 5.6, E = 1
*->dnykalDdLiaqlaf<-*
+n+ ++D+L+ ++++
gi|1674681 565 ENFLDIDSLLKNSTH 579
DED: domain 1 of 1, from 586 to 599: score 1.5, E = 9.4
CS HHHHHHHHHCTSCH
*->yrvlLleisenLds<-*
yr+lL +is+++ +
gi|1674681 586 YRKLLNSISNDINK 599
DUF1970: domain 1 of 1, from 588 to 606: score 3.0, E = 0.49
*->KLtdsitsqLnnYAesLnD<-*
KL +si+ +n Y esLn+
gi|1674681 588 KLLNSISNDINKYMESLNE 606
essB: domain 1 of 1, from 588 to 604: score 0.7, E = 7
*->ekLdelekeldeYeker<-*
++L+++ ++++Y++++
gi|1674681 588 KLLNSISNDINKYMESL 604
VHS: domain 1 of 1, from 588 to 618: score 2.0, E = 5.3
CS HHHHHHHHH-.......TT-HHHHHHHHHHHHTT
*->eliqeWadafCKhdknkpdlkyisdvyklLKrkG<-*
+l+ + ++++ +k+ ++l+ i+d+y+lL+++
gi|1674681 588 KLLNSISNDI---NKYMESLNEIKDSYHLLPFDV 618
DUF1002: domain 1 of 1, from 590 to 608: score 1.0, E = 7.6
*->lnilnnDygafkkqLnslk<-*
ln ++nD++++ ++Ln +k
gi|1674681 590 LNSISNDINKYMESLNEIK 608
DUF1322: domain 1 of 1, from 590 to 611: score 1.2, E = 9.1
*->MsKRnRDiDKAiAsLaEiakkY<-*
++ Di K + sL+Ei+ Y
gi|1674681 590 LNSISNDINKYMESLNEIKDSY 611
Phage_Gp15: domain 1 of 1, from 599 to 613: score 1.9, E = 1
*->kYldsmrklqakYsL<-*
kY +s+ + ++ Y L
gi|1674681 599 KYMESLNEIKDSYHL 613
UBA_2: domain 1 of 1, from 603 to 614: score 2.9, E = 2.8
*->slNEIkDAYlLv<-*
slNEIkD Y L+
gi|1674681 603 SLNEIKDSYHLL 614
DUF1972: domain 1 of 1, from 690 to 695: score 1.6, E = 3.9
*->IAYGTD<-*
IAYGT+
gi|1674681 690 IAYGTQ 695
Glucosaminidase: domain 1 of 1, from 714 to 731: score 3.7, E = 1.5
*->TDpaYAdklaniieqyyl<-*
TD++Y ++an+ie y+l
gi|1674681 714 TDGVYSFSVANVIEIYKL 731
DUF1451: domain 1 of 1, from 836 to 863: score 1.3, E = 7.8
*->llerlterlklsekeLkkaveqakeylv<-*
++e l + +++ k++++++e+ +ylv
gi|1674681 836 VVELLLKDVRNKIKSVDQLIESYSQYLV 863
ATP-synt: domain 1 of 1, from 841 to 851: score 2.6, E = 0.66
CS --HHHHHHHHHHH
*->AsLKeIrdRIkSV<-*
LK++r++IkSV
gi|1674681 841 --LKDVRNKIKSV 851
FerA: domain 1 of 1, from 848 to 862: score 3.7, E = 4.7
*->lklLDQlIeDcssfpL<-*
+k++DQlIe+ s+ +L
gi|1674681 848 IKSVDQLIESYSQ-YL 862
DUF1926: domain 1 of 1, from 885 to 904: score 2.4, E = 1.9
CS EEETTTTEETT--------G
*->lDskslahNyaDvLaRrwEh<-*
+D++s+ N++D++++r+E+
gi|1674681 885 FDTYSKFENFLDIIRQRPEL 904
Mqo: domain 1 of 1, from 905 to 920: score -0.6, E = 8.5
*->RnsDGtWtVtvkdlnng<-*
RnsD+ W+++v+++ +g
gi|1674681 905 RNSDN-WQLVVANNATG 920
SPC25: domain 1 of 1, from 934 to 950: score 0.3, E = 8.9
*->dkpVKviNkwDgpavKna<-*
VKv N wD pa+ n+
gi|1674681 934 PDIVKV-NEWDLPAIANI 950
T-box: domain 1 of 1, from 1017 to 1026: score 1.1, E = 3.4
*->QNeeITkLKI<-*
+Ne +TkLKI
gi|1674681 1017 HNELVTKLKI 1026
Formyl_trans_C: domain 1 of 1, from 1025 to 1035: score 2.0, E = 5.8
*->kitkedgrIDW<-*
ki +e g+I W
gi|1674681 1025 KIQPENGKIRW 1035
Phage_sheath_1: domain 1 of 1, from 1059 to 1074: score -0.9, E = 6.1
*->EyitFrfviTstylvd<-*
E +t r+ ++s+yl++
gi|1674681 1059 EQLTARLNQFSDYLQT 1074
Phage_integr_N: domain 1 of 1, from 1065 to 1075: score 1.6, E = 8.6
CS HHHHHHHHHHT
*->leqFleyLsle<-*
l+qF++yL+ e
gi|1674681 1065 LNQFSDYLQTE 1075
Sas10_Utp3_C: domain 1 of 1, from 1113 to 1124: score 3.5, E = 3.9
*->GIkknvvKSvKl<-*
GI++nv+ S+K
gi|1674681 1113 GIRTNVSASTKA 1124
aPHC: domain 1 of 1, from 1160 to 1167: score -0.6, E = 9.4
*->pgrwgeqt<-*
++rwge+t
gi|1674681 1160 WNRWGEIT 1167
DUF2213: domain 1 of 1, from 1168 to 1178: score 1.4, E = 5.5
*->stRsitadGfL<-*
++R+++++G+L
gi|1674681 1168 TERKKDINGRL 1178
STAG: domain 2 of 2, from 1169 to 1192: score 0.7, E = 9.3
*->EkkKsrdnraneRvdsLnskLgirke<-*
E+kK ++r +dsL+ kL i+ +
gi|1674681 1169 ERKKDINGR-LNNIDSLLDKL-ITRQ 1192
ATG11: domain 1 of 1, from 1184 to 1205: score 0.4, E = 8.8
*->fedaVikrfkDvetLakkLqKe<-*
+ d+ i+r +v++L+kk+q++
gi|1674681 1184 LLDKLITRQLSVNQLNKKQQRK 1205
DUF1113: domain 1 of 1, from 1191 to 1216: score 1.5, E = 4.9
*->kelllfllnfnqrRllknsFpklkyslk<-*
++l+ ++ln+ q+R l+++Fp l k
gi|1674681 1191 RQLSVNQLNKKQQRKLAEIFPQLT--DK 1216
RE_NgoPII: domain 1 of 1, from 1260 to 1280: score 1.5, E = 5
*->tDkleilaedNkkleikDvrIKn<-*
tD+ +i + d + DvrIK+
gi|1674681 1260 TDRWRITETDG--NTLQDVRIKS 1280
DUF1195: domain 1 of 1, from 1286 to 1325: score 1.7, E = 3.5
*->mkaahhhhdsdalPatttsipasgtsaangkketgysalFGKGRY<-
+ a + h+ ++ P +ts+p +++n k+ t+ +FG+ +Y
gi|1674681 1286 TDLATYPHSITSDPDLKTSAPEL--KTSNPKARTA---IFGRFGY 1325
*
gi|1674681 - -
Nup153: domain 1 of 1, from 1297 to 1313: score 0.4, E = 3.7
*->SsPspkreatqktansP<-*
S P +k++a++++ + P
gi|1674681 1297 SDPDLKTSAPELKTSNP 1313
GnsAB: domain 1 of 1, from 1346 to 1360: score 1.9, E = 7.4
*->MniEelkkkaEeeIa<-*
M+ +l++k EeeI+
gi|1674681 1346 MSNGDLTEKQEEEIQ 1360
eIF-4B: domain 1 of 1, from 1363 to 1372: score -1.7, E = 1.9
*->MsKpWGGiGiGA<-*
++ +WGGi GA
gi|1674681 1363 LAMAWGGI--GA 1372
DUF867: domain 1 of 1, from 1461 to 1475: score 2.2, E = 3.1
*->YssFeELkenetegk<-*
Y+ F+ L+ ++++++
gi|1674681 1461 YHAFSQLATETDPHV 1475
GntP_permease: domain 1 of 1, from 1483 to 1503: score 0.3, E = 5.8
*->TvleTIlSvvGLifvLiLlsLv<-*
+v +TI++++GL++ + + +++
gi|1674681 1483 GVFSTINATIGLGVAF-AMAMG 1503
PC_rep: domain 1 of 1, from 1489 to 1499: score 3.6, E = 3.7
*->gAilaLGliha<-*
+A+++LG+++a
gi|1674681 1489 NATIGLGVAFA 1499
DUF2328: domain 1 of 1, from 1497 to 1519: score 0.4, E = 5.4
*->lLAreaGgtisveiteeavvlsa<-*
+ A ++Ggt + +++++++ l++
gi|1674681 1497 AFAMAMGGTAATAAGPAGIALAF 1519
PepSY_TM: domain 1 of 1, from 1502 to 1525: score 5.8, E = 2
*->lgdlHrgrfggvallglllglllllllltGlvlw<-*
+g+ ++ ++g+++++l++t+++++
gi|1674681 1502 MGG----------TAATAAGPAGIALAFTMIIVG 1525
UPF0147: domain 1 of 1, from 1526 to 1538: score 3.7, E = 4.2
*->dIWeiiSeLErik<-*
dI++ +S+ Eri+
gi|1674681 1526 DIYSAVSQIERIR 1538
Orthopox_F7: domain 1 of 1, from 1566 to 1581: score 3.0, E = 1.4
*->LDiKRRYRHaiEsvYF<-*
LD + RY ++EsvY
gi|1674681 1566 LDNQIRYNQTMESVYQ 1581
Cw-hydrolase: domain 1 of 1, from 1576 to 1614: score 4.0, E = 1.2
*->mlsalilselsypAllLaeqqvhqrfvhpgPLvLkaapl<-*
m s+ + + y+All +q v+ f g vLka p+
gi|1674681 1576 MESVYQRQRDYYEALLASKQGVDTLFYSRGEAVLKAIPF 1614
Herpes_PAP: domain 1 of 1, from 1683 to 1693: score -1.0, E = 5.7
CS EEHHHHHHHHH
*->vqaKNLqQALs<-*
+q KNL+QA+s
gi|1674681 1683 LQNKNLHQAFS 1693
Nitr_red_assoc: domain 1 of 1, from 1685 to 1695: score 1.7, E = 2
*->NhNFlpAlqEF<-*
N+N+ A++E+
gi|1674681 1685 NKNLHQAFSEL 1695
PKI: domain 1 of 1, from 1695 to 1708: score 1.4, E = 6.8
*->tDVEStyadFisSg<-*
D+ Sty+ Fi S+
gi|1674681 1695 LDIDSTYSPFILSA 1708
FG-GAP: domain 1 of 4, from 1700 to 1725: score 8.8, E = 0.14
CS CCSCEEEC -TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvyll<-*
++s+ + D++++G++D++v +++ +
gi|1674681 1700 TYSPFILSaDVDRNGLNDFIV-------INeK-----Y 1725
Antimicrobial16: domain 1 of 1, from 1772 to 1787: score 2.4, E = 5.8
*->WEelLyeliliKfkit<-*
WE l + + + Kf+
gi|1674681 1772 WEKLFHAIEVDKFNEV 1787
FG-GAP: domain 2 of 4, from 1786 to 1816: score 9.4, E = 0.096
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+ +++gD+nGD +lv+ +++d+ ++y++
gi|1674681 1786 EVVFPVLGDFNGDNVFELVI-------FHdDkMTTYHY 1816
TmoB: domain 1 of 1, from 1788 to 1804: score 0.8, E = 9.1
CS --EEEEEEEETT-SBEEEE
*->MAlFPiisnFegDFVlQLV<-*
FP+ + F gD V LV
gi|1674681 1788 --VFPVLGDFNGDNVFELV 1804
Gp49: domain 1 of 1, from 1797 to 1809: score 2.7, E = 6.9
*->GeGvfELRidygp<-*
G+ vfEL i +++
gi|1674681 1797 GDNVFELVIFHDD 1809
FG-GAP: domain 3 of 4, from 1856 to 1881: score 12.6, E = 0.011
CS EEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->vaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+++gD+n+DG++D+++ +++g +l
gi|1674681 1856 SLVGDINNDGFDDILL-------LNkSGDMLHL 1881
FG-GAP: domain 4 of 4, from 1910 to 1937: score 10.9, E = 0.033
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+ s++ ++Dln DG Dlv+ + +d + ++
gi|1674681 1910 HRSQLQLTDLNKDGGLDLVI-------ILnD--GIYY 1937
DUF2072: domain 1 of 1, from 1945 to 1959: score 1.6, E = 2.8
*->EGtYviDLpSalkkk<-*
+G Y+ D pS+++k
gi|1674681 1945 DGEYHFDTPSMVNKI 1959
FlgD: domain 1 of 1, from 1947 to 1973: score 1.0, E = 7.2
*->evgLpsaAdevtvtikDaaGqvvnvelVrtid<-*
e+ ++ ++ ++tik+++G+ Vr +
gi|1674681 1947 EYHFDTPSMVNKITIKNEGGDS-----VRYQQ 1973
SIS: domain 1 of 1, from 2034 to 2047: score 1.6, E = 9.6
CS HHHHSEEEEEE-CH
*->klakakrIyliGaG<-*
++k+k+I++iG+G
gi|1674681 2034 GYHKKKNIFTIGSG 2047
HemolysinCabind: domain 1 of 3, from 2072 to 2082: score 7.6, E = 0.4
CS EEEEESSCGEE
*->tLyGgaGnDtl<-*
+L+Gg+GnDt
gi|1674681 2072 ILSGGEGNDTV 2082
DUF1767: domain 1 of 1, from 2092 to 2107: score 1.8, E = 6.3
*->vnsirDIsqPlynqlLs<-*
++si+DIs +y+q+ +
gi|1674681 2092 IDSIIDISNGYYSQV-N 2107
EST1_DNA_bind: domain 1 of 2, from 2119 to 2135: score 1.0, E = 13
*->DYdkifssedipDrLvG<-*
D++ i++ e++ D ++G
gi|1674681 2119 DFENILGHENVNDTIIG 2135
DUF2002: domain 1 of 1, from 2140 to 2152: score 1.9, E = 3.1
*->ryLnrlFGDEKtd<-*
+yLn++ GD+K
gi|1674681 2140 NYLNGMGGDDKIW 2152
HemolysinCabind: domain 2 of 3, from 2143 to 2160: score 14.9, E = 0.0023
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +G+D + G++GnD+l
gi|1674681 2143 NGMGGDDKIWGNGGNDLL 2160
U3_assoc_6: domain 1 of 1, from 2176 to 2191: score 1.7, E = 8.8
*->kkfknsisdysiqrrI<-*
+++ +s+++ s+q rI
gi|1674681 2176 YHILKSTHEKSLQIRI 2191
Lipoprotein_17: domain 1 of 1, from 2208 to 2223: score 2.5, E = 6.4
*->eLeeeinkIssielke<-*
Le ++n+I+siel +
gi|1674681 2208 FLEHKLNQIKSIELDN 2223
DUF1248: domain 1 of 1, from 2221 to 2231: score 3.0, E = 1.1
*->rddVDvviNPd<-*
+d++Dv+iN++
gi|1674681 2221 LDNIDVLININ 2231
OstA_C: domain 1 of 1, from 2225 to 2252: score -0.2, E = 7.4
*->ddpdyntatnsgqdkisqiglsaqwplarnW<-*
d +++++++n++ + qi+l++ +++++n
gi|1674681 2225 DVLININNDNGF---MTQIRLVGVYNINNNQ 2252
Ninjurin: domain 1 of 1, from 2242 to 2260: score 1.1, E = 5.1
*->figrLnlnrvedqrrlnrl<-*
+ g +n+n++++q ln++
gi|1674681 2242 LVGVYNINNNQKQQVLNFT 2260
Shigella_OspC: domain 1 of 1, from 2247 to 2265: score -0.1, E = 5.7
*->vEisnHqkklPLnkkHHtvD<-*
i n qk+ Ln + tvD
gi|1674681 2247 -NINNNQKQQVLNFTIQTVD 2265
Mtr2: domain 1 of 1, from 2319 to 2328: score 1.2, E = 4
CS EECCTT....
*->ngqtQqQVTH<-*
ng +QqQVTH
gi|1674681 2319 NGYQQQQVTH 2328
RYDR_ITPR: domain 1 of 1, from 2427 to 2453: score 0.5, E = 7.8
CS XXXXXXXXXXX.....XXXXXXXXXXXXXXXX
*->lickevlnpGesVEENaDlLiqtnlraseasl<-*
l+c +v++++ DlL+++++ ++
gi|1674681 2427 LLC-DVIVERS----DDDLLLRYRDQPEKHQS 2453
UspB: domain 1 of 1, from 2454 to 2467: score 1.6, E = 8.5
*->vRLfhYIksqeYlh<-*
+RL++Y + ++Y h
gi|1674681 2454 IRLVNYMNDERYRH 2467
HemolysinCabind: domain 3 of 3, from 2543 to 2559: score 6.3, E = 0.96
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +G L Gg+G+Dt+
gi|1674681 2543 RGHEGT-MLKGGGGDDTY 2559
SDH_beta: domain 1 of 1, from 2560 to 2576: score 4.2, E = 0.84
*->YySiGGGfIvdeehfGl<-*
YyS G G+I + +++Gl
gi|1674681 2560 YYSAGSGAINIADTSGL 2576
BRK: domain 1 of 1, from 2682 to 2702: score 3.6, E = 3.8
*->klkdLerWLqenPgYevdlafiPrs<-*
+l+++++W+ nP Y+v+ + +
gi|1674681 2682 QLRTIKAWVTKNPIYDVA----DLD 2702
DUF885: domain 1 of 1, from 2721 to 2733: score 3.7, E = 0.4
*->PLdvLEqkvdrwI<-*
PL++ Eqk+d+++
gi|1674681 2721 PLPLIEQKIDAFF 2733
DUF2599: domain 1 of 1, from 2746 to 2753: score 0.0, E = 9
*->IdhatWaqw<-*
+h+tW+q+
gi|1674681 2746 -EHVTWIQR 2753
CUT: domain 1 of 1, from 2752 to 2766: score 2.6, E = 4.9
CS XXX---SHHHHHHHH
*->mneeldTaeIarrVk<-*
+ ee dT++Ia++Vk
gi|1674681 2752 QREEFDTVDIAKWVK 2766
Toprim_N: domain 1 of 1, from 2769 to 2804: score 2.7, E = 3.8
CS HHHHHT-HHHHHTTT-EE-SST..T--EET TTTEE
*->fLkkkgfdeelLleaGLlsknenggkfyDr.FrnRi<-*
+L++++ + lL+++GLl+++ +k D++F+nRi
gi|1674681 2769 HLRSQNEINYLLEQLGLLKESPLSDKALDFtFKNRI 2804
PSP1: domain 1 of 1, from 2796 to 2809: score 1.8, E = 5.4
*->LakvfktRIELRQI<-*
L ++fk RI L+Q
gi|1674681 2796 LDFTFKNRIDLAQA 2809
DUF1108: domain 1 of 1, from 2825 to 2832: score 0.9, E = 1.1
*->LINLVMkW<-*
LINL Mk
gi|1674681 2825 LINLAMKY 2832
CIA30: domain 1 of 1, from 2838 to 2849: score 3.1, E = 1.3
*->GpFeLeidsIka<-*
G+FeL+i I++
gi|1674681 2838 GHFELLISNIQV 2849
Peptidase_U57: domain 1 of 1, from 2853 to 2864: score 0.2, E = 8.4
*->vGvhvsEkEqPE<-*
+Gv+vsE EqP+
gi|1674681 2853 YGVVVSESEQPL 2864
RecO: domain 1 of 1, from 2870 to 2903: score 3.6, E = 0.84
*->akLkplldskleesslvERlyelsrsflprrelL<-*
+ L +++ +k +++ v Rl e + sf++ +lL
gi|1674681 2870 IDLRQYFNQKNLTKDHVGRLAEHDMSFDELTLLL 2903
DUF1814: domain 1 of 1, from 2872 to 2950: score 2.5, E = 1.7
*->ikrtflerllalhkflfysrkdedfdgil.aeaa.gllllapwlefl
++ f +++l++++ +++++d fd+ + ++ + ++a+++++
gi|1674681 2872 LRQYFNQKNLTKDHVGRLAEHDMSFDELTlLLDKnIPIEQAFTQRLQ 2918
kei.la..............ltedyeeflesl<-*
++++++ ++++ ++++ + +d++ ++e +
gi|1674681 2919 TQLgPLklfndervfnkgdvFDQDISQLAEAM 2950
Glyco_hydro_26: domain 1 of 1, from 2925 to 2937: score 4.1, E = 0.53
CS H..........ST
*->alynsswVlnkDE<-*
+l+n+++V nk+
gi|1674681 2925 KLFNDERVFNKGD 2937
EST1_DNA_bind: domain 2 of 2, from 2927 to 2940: score 1.1, E = 12
*->FNDYdkifssedipD<-*
FND + +f+++d+ D
gi|1674681 2927 FND-ERVFNKGDVFD 2940
//