hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 167516882.fa
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Query sequence: gi|167516882|ref|XP_001742782.1|
Accession: [none]
Description: predicted protein [Monosiga brevicollis MX1]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SurA_N SurA N-terminal domain 4.7 0.52 1
SPW SPW repeat 5.4 1 1
DUF402 Protein of unknown function (DUF402) 5.5 1.2 1
TBC TBC domain 2.7 2.1 1
VacA Vacuolating cyotoxin -1.8 2.2 1
Bile_Hydr_Trans Acyl-CoA thioester hydrolase / Bile a 1.5 7.3 1
Ribosomal_S6e Ribosomal protein S6e 1.1 8.2 1
Caldesmon Caldesmon -2.5 8.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Caldesmon 1/1 95 114 .. 61 80 .. -2.5 8.8
Bile_Hydr_Trans 1/1 96 113 .. 1 18 [. 1.5 7.3
SurA_N 1/1 108 117 .. 128 137 .] 4.7 0.52
TBC 1/1 113 133 .. 199 219 .] 2.7 2.1
DUF402 1/1 134 151 .. 59 76 .] 5.5 1.2
Ribosomal_S6e 1/1 146 154 .. 119 127 .] 1.1 8.2
VacA 1/1 200 224 .. 1 25 [. -1.8 2.2
SPW 1/1 209 224 .. 38 53 .] 5.4 1
Alignments of top-scoring domains:
Caldesmon: domain 1 of 1, from 95 to 114: score -2.5, E = 8.8
*->evtekvEvnAqnsvaeEEaK<-*
+vt+kv + A n v +EE K
gi|1675168 95 QVTQKVAITAENCVTDEEVK 114
Bile_Hydr_Trans: domain 1 of 1, from 96 to 113: score 1.5, E = 7.3
*->vDEpvrIrVsGLaPgqpV<-*
v ++v+I++++++ +++V
gi|1675168 96 VTQKVAITAENCVTDEEV 113
SurA_N: domain 1 of 1, from 108 to 117: score 4.7, E = 0.52
*->VsdqEVdnfL<-*
V+d EV nfL
gi|1675168 108 VTDEEVKNFL 117
TBC: domain 1 of 1, from 113 to 133: score 2.7, E = 2.1
*->vllfrvaLAvLkilkeqiLda<-*
v +f++ LA L + + +iL +
gi|1675168 113 VKNFLCGLAKLTSERIDILGC 133
DUF402: domain 1 of 1, from 134 to 151: score 5.5, E = 1.2
*->DvvvrpdgevellDeDEL<-*
Dv +p g+ l D +EL
gi|1675168 134 DVAASPEGKKMLKDIEEL 151
Ribosomal_S6e: domain 1 of 1, from 146 to 154: score 1.1, E = 8.2
*->kdIpgLtdd<-*
kdI++Lt++
gi|1675168 146 KDIEELTGT 154
VacA: domain 1 of 1, from 200 to 224: score -1.8, E = 2.2
CS XXXXX-HHHHHHHHHHHHHHHHHHH
*->AFFttviiPAivGGiAtGaAvGtvs<-*
A+ iPA+vG +A G A G s
gi|1675168 200 AWKGEAPIPAVVGVMAMGFASGAAS 224
SPW: domain 1 of 1, from 209 to 224: score 5.4, E = 1
*->aavalLalgFasaleR<-*
a+v++ a+gFas ++
gi|1675168 209 AVVGVMAMGFASGAAS 224
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