hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            167625477.fa
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Query sequence: gi|167625477|ref|YP_001675771.1|
Accession:      [none]
Description:    hypothetical protein Shal_3571 [Shewanella halifaxensis HAW-EB4]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Nucleoporin     Non-repetitive/WGA-negative nucleopor    -0.1        2.6   1
DUF1852         Domain of unknown function (DUF1852)      0.0          4   1
UPF0125         Uncharacterised protein family (UPF01     2.4        4.7   1
DUF1183         Protein of unknown function (DUF1183)    -2.7        7.3   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
DUF1183           1/1      47    64 ..     1    18 [.    -2.7      7.3
Nucleoporin       1/1     135   156 ..     1    22 [.    -0.1      2.6
DUF1852           1/1     149   170 ..   303   324 .]     0.0        4
UPF0125           1/1     203   215 ..     1    13 [.     2.4      4.7

Alignments of top-scoring domains:
DUF1183: domain 1 of 1, from 47 to 64: score -2.7, E = 7.3
                   *->lslLLfLlLvvpvalswg<-*
                       +lLL+LlL+v  al+++
  gi|1676254    47    WLLLLCLLLFVNDALAGE    64

Nucleoporin: domain 1 of 1, from 135 to 156: score -0.1, E = 2.6
                   *->ktSglalsepLelAgklidrll<-*
                       + + a+s +  lAg+ id+++
  gi|1676254   135    TIIAKASSSAIYLAGRWIDKHY    156

DUF1852: domain 1 of 1, from 149 to 170: score 0.0, E = 4
                   *->gkfaeehFikPykavLeqwsae<-*
                      g++ ++h++  ++a L q+s++
  gi|1676254   149    GRWIDKHYLVEHQASLGQFSSQ    170

UPF0125: domain 1 of 1, from 203 to 215: score 2.4, E = 4.7
                   *->ikVeVVYAlPerQ<-*
                      +++ V Y +P++Q
  gi|1676254   203    MNIDVIYMKPHQQ    215

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