hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 168699676.fa
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Query sequence: gi|168699676|ref|ZP_02731953.1|
Accession: [none]
Description: Na-Ca exchanger/integrin-beta4 [Gemmata obscuriglobus UQM 2246]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FG-GAP FG-GAP repeat 60.4 1.2e-16 4
Cadherin Cadherin domain 12.4 0.0076 2
CARDB CARDB 12.9 0.0079 1
PKD PKD domain 8.6 0.042 3
DUF1573 Protein of unknown function (DUF1573) 7.4 0.39 1
HYR HYR domain 5.7 0.45 1
Chal_sti_synt_N Chalcone and stilbene synthases, N-te 3.1 0.59 1
CcdA Post-segregation antitoxin CcdA 5.7 0.66 1
Big_3 Bacterial Ig-like domain (group 3) 6.2 0.85 1
AHS2 Allophanate hydrolase subunit 2 2.5 1.4 1
Planc_extracel Planctomycete extracellular 3.7 1.8 1
He_PIG Putative Ig domain 4.3 1.9 1
DUF736 Protein of unknown function (DUF736) 4.3 1.9 1
Haemagg_act haemagglutination activity domain 3.2 2.1 1
HyaE Hydrogenase-1 expression protein HyaE 2.4 2.2 1
SseC Secretion system effector C (SseC) li 0.8 2.2 1
PepX_C X-Pro dipeptidyl-peptidase C-terminal 2.5 2.3 1
DUF869 Plant protein of unknown function (DU 0.2 3.5 1
DUF2401 Putative secretory protein (DUF2401) 1.8 4 1
Sperm_act_pep Sperm-activating peptides 5.0 4.2 1
Glt_symporter Sodium/glutamate symporter 1.1 4.7 1
XisH XisH protein 1.4 5 1
DUF1835 Domain of unknown function (DUF1835) 2.3 5 1
ATP-synt ATP synthase -0.3 5.3 1
DUF807 Coxiella burnetii protein of unknown 1.1 5.4 1
Beta_propel Beta propeller domain -0.4 5.4 1
DUF1997 Protein of unknown function (DUF1997) 1.3 5.8 1
DUF2604 Protein of Unknown function (DUF2604) 1.3 6.6 1
PTS-HPr PTS HPr component phosphorylation sit 2.0 6.7 1
PfkB pfkB family carbohydrate kinase 0.5 6.8 1
Talin_middle Talin, middle domain 0.3 6.8 1
Pentapeptide_2 Pentapeptide repeats (8 copies) 2.6 6.9 3
MutL_C MutL C terminal dimerisation domain 1.0 7.1 1
MAS20 MAS20 protein import receptor 0.9 7.1 1
DUF915 Alpha/beta hydrolase of unknown funct 0.2 7.2 1
FlgD Flagellar hook capping protein 0.8 8.7 1
DUF998 Protein of unknown function (DUF998) 1.5 8.9 1
Ribosomal_S19e Ribosomal protein S19e 0.8 9.1 1
Mur_ligase Mur ligase family, catalytic domain 1.4 9.1 1
SRP19 SRP19 protein 1.8 9.4 1
YbbR YbbR-like protein 1.4 9.8 1
RtxA RtxA repeat 3.1 9.8 1
DUF1779 Protein of unknown function (DUF1779) -1.6 9.9 1
Plug TonB-dependent Receptor Plug Domain 1.2 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Planc_extracel 1/1 31 41 .. 18 28 .] 3.7 1.8
Glt_symporter 1/1 47 53 .. 372 378 .] 1.1 4.7
HyaE 1/1 56 90 .. 1 36 [. 2.4 2.2
DUF1779 1/1 69 79 .. 1 11 [. -1.6 9.9
PTS-HPr 1/1 95 109 .. 73 87 .] 2.0 6.7
DUF2401 1/1 109 125 .. 1 19 [. 1.8 4
Sperm_act_pep 1/1 125 134 .. 1 10 [] 5.0 4.2
CcdA 1/1 139 148 .. 63 72 .] 5.7 0.66
DUF1997 1/1 171 184 .. 176 189 .] 1.3 5.8
ATP-synt 1/1 192 198 .. 316 322 .] -0.3 5.3
DUF1573 1/1 231 240 .. 1 10 [. 7.4 0.39
DUF1835 1/1 238 266 .. 6 34 .. 2.3 5
DUF807 1/1 276 289 .. 40 53 .. 1.1 5.4
AHS2 1/1 402 411 .. 1 10 [. 2.5 1.4
Plug 1/1 488 502 .. 89 104 .] 1.2 10
MAS20 1/1 497 522 .. 161 184 .] 0.9 7.1
Haemagg_act 1/1 499 514 .. 124 139 .] 3.2 2.1
Pentapeptide_2 1/3 545 562 .. 23 40 .] 2.0 10
Talin_middle 1/1 553 565 .. 152 164 .] 0.3 6.8
Pentapeptide_2 2/3 577 592 .. 1 16 [. 0.5 28
RtxA 1/1 578 597 .. 1 19 [] 3.1 9.8
PfkB 1/1 673 692 .. 307 326 .] 0.5 6.8
Mur_ligase 1/1 696 713 .. 1 18 [. 1.4 9.1
DUF915 1/1 709 727 .. 195 213 .. 0.2 7.2
Pentapeptide_2 3/3 764 779 .. 1 16 [. 0.1 35
DUF736 1/1 941 958 .. 1 18 [. 4.3 1.9
PKD 1/3 970 991 .. 71 92 .] 3.2 1.9
DUF2604 1/1 991 998 .. 1 10 [. 1.3 6.6
DUF998 1/1 1053 1069 .. 146 162 .] 1.5 8.9
DUF869 1/1 1084 1096 .. 886 898 .] 0.2 3.5
HYR 1/1 1098 1117 .. 66 86 .] 5.7 0.45
PKD 2/3 1100 1117 .. 75 92 .] 0.9 9.5
Cadherin 1/2 1102 1118 .. 82 107 .] 5.1 0.98
SseC 1/1 1159 1195 .. 1 44 [. 0.8 2.2
PepX_C 1/1 1186 1213 .. 275 316 .] 2.5 2.3
Beta_propel 1/1 1198 1219 .. 710 731 .] -0.4 5.4
CARDB 1/1 1206 1241 .. 52 93 .. 12.9 0.0079
YbbR 1/1 1219 1245 .. 62 93 .] 1.4 9.8
Cadherin 2/2 1266 1310 .. 8 62 .. 7.4 0.21
He_PIG 1/1 1312 1334 .. 35 61 .] 4.3 1.9
Big_3 1/1 1317 1345 .. 45 70 .] 6.2 0.85
PKD 3/3 1320 1345 .. 67 92 .] 4.5 0.76
FlgD 1/1 1373 1383 .. 140 155 .] 0.8 8.7
FG-GAP 1/4 1389 1417 .. 1 34 [. 8.0 0.25
FG-GAP 2/4 1442 1474 .. 1 36 [] 18.0 0.0003
Chal_sti_synt_N 1/1 1453 1465 .. 215 227 .] 3.1 0.59
FG-GAP 3/4 1494 1526 .. 1 36 [] 21.9 2.1e-05
SRP19 1/1 1544 1561 .. 66 83 .. 1.8 9.4
FG-GAP 4/4 1546 1578 .. 1 36 [] 12.6 0.011
Ribosomal_S19e 1/1 1550 1558 .. 1 9 [. 0.8 9.1
MutL_C 1/1 1567 1581 .. 137 151 .] 1.0 7.1
XisH 1/1 1578 1587 .. 128 137 .] 1.4 5
Alignments of top-scoring domains:
Planc_extracel: domain 1 of 1, from 31 to 41: score 3.7, E = 1.8
*->rlEsLEsRrLL<-*
r+E LE R +L
gi|1686996 31 RIEVLEARTVL 41
Glt_symporter: domain 1 of 1, from 47 to 53: score 1.1, E = 4.7
*->VTerFGp<-*
+T++FGp
gi|1686996 47 ITSHFGP 53
HyaE: domain 1 of 1, from 56 to 90: score 2.4, E = 2.2
*->LiqRLltrfGwpvVDNaatlD.dflaaAdeepgdgVL<-*
++R t++++ vVD ++ D flaa + +g +VL
gi|1686996 56 -AERVATQHELVVVD-PHVADwQFLAASAKTQGRAVL 90
DUF1779: domain 1 of 1, from 69 to 79: score -1.6, E = 9.9
*->DvsveeWtvhA<-*
D +v +W+++A
gi|1686996 69 DPHVADWQFLA 79
PTS-HPr: domain 1 of 1, from 95 to 109: score 2.0, E = 6.7
CS HHHHHHHHHHHHHHT
*->eeeAlaAlvdliake<-*
e++++a +++++a++
gi|1686996 95 EQDGIAQVGAALAAG 109
DUF2401: domain 1 of 1, from 109 to 125: score 1.8, E = 4
*->sgdWnRvaYYtAssgtadN<-*
++dW v++++ g+ad+
gi|1686996 109 GSDWTGVHFFS--HGSADG 125
Sperm_act_pep: domain 1 of 1, from 125 to 134: score 5.0, E = 4.2
*->GFsLgGgGVg<-*
GF+LgG+ ++
gi|1686996 125 GFQLGGSQID 134
CcdA: domain 1 of 1, from 139 to 148: score 5.7, E = 0.66
*->GsFaDEyRdf<-*
Gs+aDE R +
gi|1686996 139 GSYADEVRQW 148
DUF1997: domain 1 of 1, from 171 to 184: score 1.3, E = 5.8
*->trqLleDFhawiae<-*
+r+Ll DF+aw +
gi|1686996 171 GRSLLDDFRAWTGA 184
ATP-synt: domain 1 of 1, from 192 to 198: score -0.3, E = 5.3
CS HHHHHT-
*->VsGAaAL<-*
V+GAaAL
gi|1686996 192 VTGAAAL 198
DUF1573: domain 1 of 1, from 231 to 240: score 7.4, E = 0.39
*->tFeFkNtGda<-*
tF+++NtGd+
gi|1686996 231 TFTVTNTGDS 240
DUF1835: domain 1 of 1, from 238 to 266: score 2.3, E = 5
*->geSaagsLkqaLkQrGlpeeekVislpDd<-*
g+S agsL+qa ++++ +e +i ++ +
gi|1686996 238 GDSGAGSLRQAIADANAADEADTIEFNLS 266
DUF807: domain 1 of 1, from 276 to 289: score 1.1, E = 5.4
*->TGeYTItfLSarnv<-*
TG+ TIt+ Sa +v
gi|1686996 276 TGKWTITLASALDV 289
AHS2: domain 1 of 1, from 402 to 411: score 2.5, E = 1.4
*->hlGVppSGAM<-*
+ GV++SGAM
gi|1686996 402 QNGVSVSGAM 411
Plug: domain 1 of 1, from 488 to 502: score 1.2, E = 10
CS .SCHTTTTSSTGSSEE
*->DGpssalyGagalgGv<-*
DG+ sa+ G + +gGv
gi|1686996 488 DGSVSASSG-NHIGGV 502
MAS20: domain 1 of 1, from 497 to 522: score 0.9, E = 7.1
*->nyvkGVvvaklerd..avaeanvilD<-*
n ++GVvv+ + +a+++ nvi
gi|1686996 497 NHIGGVVVSSANNAigAASAGNVISG 522
Haemagg_act: domain 1 of 1, from 499 to 514: score 3.2, E = 2.1
CS EEEEEEE-SEEEEETT
*->vgglfvtTgaisikff<-*
+gg++v+++++ i ++
gi|1686996 499 IGGVVVSSANNAIGAA 514
Pentapeptide_2: domain 1 of 3, from 545 to 562: score 2.0, E = 10
*->iGsfNlGngNtGdgNsGd<-*
iG + G+ tG+gN+++
gi|1686996 545 IGTDTAGSAATGFGNASG 562
Talin_middle: domain 1 of 1, from 553 to 565: score 0.3, E = 6.8
*->AAgrVGeASghlL<-*
AA+ G ASg lL
gi|1686996 553 AATGFGNASGVLL 565
Pentapeptide_2: domain 2 of 3, from 577 to 592: score 0.5, E = 28
*->gNtGslNiGSGNlGsg<-*
+ +G++N+ SG++G g
gi|1686996 577 AAAGAGNVVSGHSGNG 592
RtxA: domain 1 of 1, from 578 to 597: score 3.1, E = 9.8
*->GaGgaNvit.kvGdggdlaf<-*
+aG++Nv+ +++G+g d++
gi|1686996 578 AAGAGNVVSgHSGNGVDMNN 597
PfkB: domain 1 of 1, from 673 to 692: score 0.5, E = 6.8
CS HHHHHHHHTSSSSGGGSSSH
*->navAalvvqkkGaisslptl<-*
na++ ++v+ Ga+ s++tl
gi|1686996 673 NAAGTAAVSNGGAGISIDTL 692
Mur_ligase: domain 1 of 1, from 696 to 713: score 1.4, E = 9.1
CS EEEEESTTSHHHHHHHHH
*->eihfigidsrgmspgalF<-*
+ ++++i++++ ++g l+
gi|1686996 696 RSTGLTIGGTTAGAGNLI 713
DUF915: domain 1 of 1, from 709 to 727: score 0.2, E = 7.2
*->aGdlengkqsDGiVpwaSS<-*
aG+l +g++sDGi + a+S
gi|1686996 709 AGNLISGNNSDGILVQADS 727
Pentapeptide_2: domain 3 of 3, from 764 to 779: score 0.1, E = 35
*->gNtGslNiGSGNlGsg<-*
+ +G+ N+ SGNlG g
gi|1686996 764 TTAGARNVISGNLGEG 779
DUF736: domain 1 of 1, from 941 to 958: score 4.3, E = 1.9
*->aqIGtFtrtddGgftGri<-*
+ IG +t++++G f+G++
gi|1686996 941 TYIGFLTTDASGNFSGSL 958
PKD: domain 1 of 3, from 970 to 991: score 3.2, E = 1.9
CS EEEEEEEETTCEEEEEEEEEEE
*->tVtLtvsngvgsasattttvtV<-*
+Vt t++++ g++s t++ V
gi|1686996 970 SVTATATDAGGNTSEFGTNFDV 991
DUF2604: domain 1 of 1, from 991 to 998: score 1.3, E = 6.6
*->VVVNGqPvdV<-*
VNG+Pv V
gi|1686996 991 --VNGEPVAV 998
DUF998: domain 1 of 1, from 1053 to 1069: score 1.5, E = 8.9
*->pGlAipEligiiviliw<-*
+G+A+++++g +vi +
gi|1686996 1053 VGVAVAGTYGSVVINAD 1069
DUF869: domain 1 of 1, from 1084 to 1096: score 0.2, E = 3.5
*->qSLapqeefllds<-*
q+L++++++l+d+
gi|1686996 1084 QALRTSSDTLTDT 1096
HYR: domain 1 of 1, from 1098 to 1117: score 5.7, E = 0.45
*->tYtatDnaGNeAdsCtFtVtV<-*
tYt tD G + + ++tVt+
gi|1686996 1098 TYTITDGGGLTS-TAQLTVTI 1117
PKD: domain 2 of 3, from 1100 to 1117: score 0.9, E = 9.5
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
t ++g g++s+ ++tvt+
gi|1686996 1100 TITDGGGLTSTAQLTVTI 1117
Cadherin: domain 1 of 2, from 1102 to 1118: score 5.1, E = 0.98
CS ---.........S---EEEE--EEE-
*->tDadpllasgggpplsstatvtitVl<-*
tD++ +l+sta++t+t+
gi|1686996 1102 TDGG---------GLTSTAQLTVTIH 1118
SseC: domain 1 of 1, from 1159 to 1195: score 0.8, E = 2.2
*->mNsDitsersGlpyHHLsnvsvaasGtlGilqrpvastledlqv<-*
+ + t ++G++ ++ v++s +G++++pva + ++l v
gi|1686996 1159 VDNGDTFTVTGVT----AG--VVGS-ASGAVGSPVAGAYGSLTV 1195
PepX_C: domain 1 of 1, from 1186 to 1213: score 2.5, E = 2.3
CS EES-BBTTS----SSSCCCGCGGGG.EEEEEEESCCC..EEE
*->isssdfphtdrnpgtgtltldlaksvatntvhtggehpSyLl<-*
+++++ t+r gt ++t+d a +++
gi|1686996 1186 VAGAYGSLTVRADGTFVYTVDNASA--------------SVQ 1213
Beta_propel: domain 1 of 1, from 1198 to 1219: score -0.4, E = 5.4
*->igDtLYtiSdseirvsdlntle<-*
+g ++Yt++++ +v+ l+ +
gi|1686996 1198 DGTFVYTVDNASASVQALRAGN 1219
CARDB: domain 1 of 1, from 1206 to 1241: score 12.9, E = 0.0079
*->s.gtvtVGdipsLaaGesttvsfswtpersiteGnyttlkvvv<-*
++++++V +L aG+s+t +f++t++ G+ t +++ v
gi|1686996 1206 DnASASV---QALRAGNSVTDTFTYTAA---DLGDLT-VTAQV 1241
YbbR: domain 1 of 1, from 1219 to 1245: score 1.4, E = 9.8
*->hsvsvtvsllapdgnvevevnvtiPstvtVti<-*
+sv+ t++ a+d++ + ++vtVti
gi|1686996 1219 NSVTDTFTYTAADLGDLTV-----TAQVTVTI 1245
Cadherin: domain 2 of 2, from 1266 to 1310: score 7.4, E = 0.21
CS S...S---EEEEE---S..-TTTT----------SS----B-TTSSE
*->napvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFrIdpdtGd
na+ Gt v++v+A aD + + + Y+++ +g F+Id+ +G+
gi|1686996 1266 NAVAGTVVGQVAAPIAD----AGATVGYALVTSA-NGLFTIDS-SGQ 1306
CS EE..E---
negiistt<-*
i ++
gi|1686996 1307 ----IAVA 1310
He_PIG: domain 1 of 1, from 1312 to 1334: score 4.3, E = 1.9
*->GritGtPtptvqpGsytftvtatdgsg<-*
G+++G+ ++ pG+y+ tv t + g
gi|1686996 1312 GAVFGS--QN--PGAYNLTVRTTGSNG 1334
Big_3: domain 1 of 1, from 1317 to 1345: score 6.2, E = 0.85
*->tskpGtytVTytYkGq...pvtatftVtV<-*
++ pG+y++T++ G ++++ +t+t V
gi|1686996 1317 SQNPGAYNLTVRTTGSngtARDQTITLGV 1345
PKD: domain 3 of 3, from 1320 to 1345: score 4.5, E = 0.76
CS SEEEEEEEEEEETTCEEEEEEEEEEE
*->pGtYtVtLtvsngvgsasattttvtV<-*
pG Y++t++ + ++g+a +t+t+ V
gi|1686996 1320 PGAYNLTVRTTGSNGTARDQTITLGV 1345
FlgD: domain 1 of 1, from 1373 to 1383: score 0.8, E = 8.7
*->DaaGqvvnvelVrtid<-*
++aGq+ Vrt+
gi|1686996 1373 NSAGQL-----VRTVA 1383
FG-GAP: domain 1 of 4, from 1389 to 1417: score 8.0, E = 0.25
CS CCSCEEEC -TTSSSSSEEEEEETCCCSCC TSEEE
*->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvy<-*
+ +va+++D +GDG++Dl+v g+++g ++
gi|1686996 1389 GSFQVAIVpDRTGDGIDDLLV-------GAgSGIGS 1417
FG-GAP: domain 2 of 4, from 1442 to 1474: score 18.0, E = 0.0003
CS CCSCEEEC-TTSSSSSEEEEEE TCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvga.Pgadggt.dgsvyll<-*
+g sva gD++GDG +D+++ga+P g++ v ++
gi|1686996 1442 GGVSVACGDVTGDGVADFIIGAgP----GAgP-HVKVF 1474
Chal_sti_synt_N: domain 1 of 1, from 1453 to 1465: score 3.1, E = 0.59
CS --EEEEEEEESS-
*->GDGAaAvIvGsDP<-*
GDG a I+G++P
gi|1686996 1453 GDGVADFIIGAGP 1465
FG-GAP: domain 3 of 4, from 1494 to 1526: score 21.9, E = 2.1e-05
CS CCSCEEEC-TTSSSSSEEEEEE TCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvga.Pgadggt.dgsvyll<-*
+g sva+gD+++DG++D+v++a+P gt v ++
gi|1686996 1494 GGVSVAVGDVTRDGFADIVTAAgP----GTaP-HVKVF 1526
SRP19: domain 1 of 1, from 1544 to 1561: score 1.8, E = 9.4
CS ..-EEEES--.....S..
*->frGRVrVelkDDnvdGLP<-*
f G VrV +D n+dGLP
gi|1686996 1544 FFGGVRVSIRDVNADGLP 1561
FG-GAP: domain 4 of 4, from 1546 to 1578: score 12.6, E = 0.011
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d..gsvyll<-*
+g v++ D+n DG+pD+++ ++t ++++ v ++
gi|1686996 1546 GGVRVSIRDVNADGLPDIIT------EATvAgrTHVKAF 1578
Ribosomal_S19e: domain 1 of 1, from 1550 to 1558: score 0.8, E = 9.1
*->vTVKDVdah<-*
v+ +DV+a+
gi|1686996 1550 VSIRDVNAD 1558
MutL_C: domain 1 of 1, from 1567 to 1581: score 1.0, E = 7.1
*->atmAChgavragrrL<-*
at A + v+a ++L
gi|1686996 1567 ATVAGRTHVKAFDTL 1581
XisH: domain 1 of 1, from 1578 to 1587: score 1.4, E = 5
*->yDpekEeIlQ<-*
+D++++eI Q
gi|1686996 1578 FDTLTGEIIQ 1587
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