hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 168708861.fa
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Query sequence: gi|168708861|ref|ZP_02741138.1|
Accession: [none]
Description: toxin B [Clostridium difficile QCD-63q42]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CW_binding_1 Putative cell wall binding repeat 152.5 2.3e-47 16
Gly_transf_sug Glycosyltransferase sugar-binding reg 32.1 4.5e-09 1
Ham1p_like Ham1 family 9.1 0.026 1
DUF1779 Protein of unknown function (DUF1779) 4.4 0.068 1
Nrf1_DNA-bind NLS-binding and DNA-binding and dimer 4.7 0.3 1
Sec66 Preprotein translocase subunit Sec66 4.0 0.59 1
Glyco_transf_64 Glycosyl transferase family 64 domain 4.4 0.61 1
DUF807 Coxiella burnetii protein of unknown 4.2 0.64 1
Pox_G5 Poxvirus G5 protein 0.9 0.74 1
UPF0254 Uncharacterised protein family (UPF02 4.1 0.79 1
Mo25 Mo25-like 2.7 0.95 1
DUF2415 Uncharacterised protein domain (DUF24 6.0 1.1 1
DUF1874 Domain of unknown function (DUF1874) 4.7 1.1 1
DUF533 Protein of unknown function (DUF533) 3.5 1.2 1
Baculo_Y142 Baculovirus Y142 protein 0.9 1.7 1
RRN3 RNA polymerase I specific transcripti 1.3 1.8 1
Not1 CCR4-Not complex component, Not1 2.3 1.9 1
UbiD 3-octaprenyl-4-hydroxybenzoate carbox 1.4 1.9 1
Surp Surp module 4.6 2.3 1
B5 tRNA synthetase B5 domain 3.2 2.5 1
DUF246 Plant protein family 1.5 2.5 1
Oscp1 Organic solute transport protein 1 2.5 2.9 1
Thr_dehydrat_C C-terminal regulatory domain of Threo 3.0 2.9 1
DUF1803 Domain of unknown function (DUF1803) 2.8 3 1
Matrix Viral matrix protein 1.3 3.1 1
Clp_N Clp amino terminal domain 3.8 3.2 1
SelB-wing_2 Elongation factor SelB, winged helix 4.3 3.7 1
LRR_1 Leucine Rich Repeat 4.2 3.8 2
Phage_Cox Regulatory phage protein cox 2.3 3.9 1
DUF1992 Domain of unknown function (DUF1992) 3.5 4.2 1
RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6 -0.5 4.3 1
DUF965 Bacterial protein of unknown function 1.6 4.3 1
Enterotoxin_a Heat-labile enterotoxin alpha chain 1.0 4.4 1
DUF972 Protein of unknown function (DUF972) 2.0 4.5 1
Ins_allergen_rp Insect allergen related repeat 3.2 4.7 1
Endonuc-FokI_C Restriction endonuclease FokI, C term 0.4 4.8 1
B3 B3 DNA binding domain 2.0 4.9 1
Peptidase_M28 Peptidase family M28 0.9 4.9 1
Porin_2 Porin subfamily 0.6 4.9 1
DUF1679 Protein of unknown function (DUF1679) 0.8 5.2 1
XFP D-xylulose 5-phosphate/D-fructose 6-p 1.1 5.3 1
Slx4 Slx4 endonuclease -0.9 5.5 1
Prenylcys_lyase Prenylcysteine lyase -0.4 5.5 1
DUF1672 Protein of unknown function (DUF1672) 0.1 5.5 1
MBD Methyl-CpG binding domain 1.9 5.6 1
Lact_bio_phlase Lacto-N-biose phosphorylase -0.8 5.8 1
Peptidase_M9 Collagenase 0.0 5.8 1
Cohesin Cohesin domain 1.8 5.8 1
DUF2124 Uncharacterized protein conserved in 1.4 5.8 1
DUF2555 Protein of unknown function (DUF2555) 2.2 6.1 1
S4 S4 domain 3.5 6.3 1
DUF270 Protein of unknown function, DUF270 -3.7 6.5 1
RnaseA Pancreatic ribonuclease 0.5 7 1
Thiol_cytolysin Thiol-activated cytolysin -0.2 7.1 1
DUF2215 Uncharacterized conserved protein (DU 0.7 7.2 1
Neugrin Neugrin -0.3 7.2 1
PalH PalH/RIM21 -0.3 7.3 1
DUF2226 Uncharacterized protein conserved in -0.8 7.4 1
ERF ERF superfamily 0.8 7.5 1
Pro_CA Carbonic anhydrase 1.3 7.5 1
APG12 Ubiquitin-like autophagy protein Apg1 0.9 7.5 1
ComK ComK protein 0.6 7.6 1
DUF648 Family of unknown function (DUF648) -0.5 7.6 1
Peptidase_U49 Peptidase U49 0.4 7.9 1
SAE2 DNA repair protein SAE2/CtIP 1.6 8.1 1
Ssl1 Ssl1-like -2.7 8.3 1
Invas_SpaK Invasion protein B family 2.1 8.4 1
Vac_Fusion Chordopoxvirus fusion protein -0.3 8.4 1
DUF2102 Uncharacterized protein conserved in 1.3 8.8 1
PDEase_I 3'5'-cyclic nucleotide phosphodiester -0.9 8.9 1
Peptidase_M24 metallopeptidase family M24 0.1 9.3 1
Orbi_VP6 Orbivirus helicase VP6 -1.7 9.3 1
Pox_A14 Poxvirus virion envelope protein A14 1.9 9.4 1
Flu_PB2 Influenza RNA-dependent RNA polymeras -1.5 9.5 1
Cyclin Cyclin -0.1 9.5 1
UPF0560 Uncharacterised protein family UPF056 -2.1 9.5 1
A2M Alpha-2-macroglobulin family 0.6 9.6 1
MED6 MED6 mediator sub complex component 0.6 9.8 1
IFN-gamma Interferon gamma 0.2 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SelB-wing_2 1/1 27 35 .. 1 9 [. 4.3 3.7
Thr_dehydrat_C 1/1 33 47 .. 79 93 .] 3.0 2.9
Nrf1_DNA-bind 1/1 53 78 .. 189 214 .] 4.7 0.3
UPF0254 1/1 65 80 .. 151 166 .] 4.1 0.79
Ham1p_like 1/1 68 79 .. 192 203 .] 9.1 0.026
LRR_1 1/2 80 101 .. 1 25 [] 2.9 9.3
Prenylcys_lyase 1/1 130 142 .. 1 13 [. -0.4 5.5
DUF2226 1/1 136 159 .. 1 26 [. -0.8 7.4
Invas_SpaK 1/1 149 161 .. 69 81 .] 2.1 8.4
ERF 1/1 150 175 .. 1 34 [. 0.8 7.5
Sec66 1/1 169 202 .. 154 189 .] 4.0 0.59
DUF1679 1/1 201 213 .. 414 426 .] 0.8 5.2
DUF965 1/1 201 211 .. 69 79 .] 1.6 4.3
Gly_transf_sug 1/1 234 291 .. 1 67 [. 32.1 4.5e-09
DUF2215 1/1 239 258 .. 277 297 .] 0.7 7.2
Baculo_Y142 1/1 324 342 .. 30 48 .. 0.9 1.7
DUF972 1/1 354 367 .. 1 14 [. 2.0 4.5
IFN-gamma 1/1 387 405 .. 1 19 [. 0.2 9.9
Vac_Fusion 1/1 399 414 .. 16 31 .. -0.3 8.4
XFP 1/1 447 455 .. 1 9 [. 1.1 5.3
DUF270 1/1 453 457 .. 1 5 [. -3.7 6.5
DUF2415 1/1 480 501 .. 16 35 .. 6.0 1.1
DUF2555 1/1 503 519 .. 1 17 [. 2.2 6.1
Mo25 1/1 558 571 .. 376 389 .] 2.7 0.95
Pro_CA 1/1 620 632 .. 191 203 .] 1.3 7.5
Clp_N 1/1 664 680 .. 37 53 .] 3.8 3.2
Enterotoxin_a 1/1 736 754 .. 247 265 .] 1.0 4.4
PalH 1/1 772 785 .. 417 431 .] -0.3 7.3
Pox_A14 1/1 809 816 .. 88 95 .] 1.9 9.4
DUF1992 1/1 834 844 .. 1 11 [. 3.5 4.2
Flu_PB2 1/1 839 851 .. 1 14 [. -1.5 9.5
Phage_Cox 1/1 851 869 .. 1 20 [. 2.3 3.9
DUF2102 1/1 855 870 .. 89 104 .] 1.3 8.8
Not1 1/1 873 892 .. 1 20 [. 2.3 1.9
B3 1/1 874 904 .. 74 104 .] 2.0 4.9
Lact_bio_phlase 1/1 877 896 .. 597 624 .. -0.8 5.8
DUF1803 1/1 906 920 .. 121 139 .] 2.8 3
Matrix 1/1 918 934 .. 339 355 .] 1.3 3.1
UPF0560 1/1 983 990 .. 1 8 [. -2.1 9.5
Cyclin 1/1 1009 1028 .. 1 20 [. -0.1 9.5
Ins_allergen_rp 1/1 1015 1024 .. 1 10 [. 3.2 4.7
DUF533 1/1 1053 1065 .. 196 208 .] 3.5 1.2
Glyco_transf_64 1/1 1124 1150 .. 83 108 .. 4.4 0.61
Peptidase_M28 1/1 1178 1194 .. 206 221 .] 0.9 4.9
UbiD 1/1 1217 1229 .. 436 448 .] 1.4 1.9
Neugrin 1/1 1220 1233 .. 1 14 [. -0.3 7.2
Ssl1 1/1 1228 1242 .. 1 15 [. -2.7 8.3
PDEase_I 1/1 1241 1258 .. 239 257 .] -0.9 8.9
Peptidase_U49 1/1 1252 1268 .. 219 241 .] 0.4 7.9
Thiol_cytolysin 1/1 1276 1286 .. 458 468 .] -0.2 7.1
DUF1779 1/1 1301 1307 .. 205 211 .] 4.4 0.068
S4 1/1 1355 1368 .. 35 48 .] 3.5 6.3
Endonuc-FokI_C 1/1 1374 1391 .. 180 197 .] 0.4 4.8
DUF2124 1/1 1412 1420 .. 149 158 .] 1.4 5.8
LRR_1 2/2 1432 1453 .. 1 25 [] 1.4 24
Cohesin 1/1 1503 1526 .. 139 164 .] 1.8 5.8
Peptidase_M24 1/1 1518 1529 .. 279 290 .] 0.1 9.3
A2M 1/1 1531 1542 .. 90 101 .] 0.6 9.6
RnaseA 1/1 1555 1561 .. 123 129 .] 0.5 7
Porin_2 1/1 1588 1594 .. 1 8 [. 0.6 4.9
DUF807 1/1 1605 1619 .. 1 15 [. 4.2 0.64
Surp 1/1 1620 1638 .. 29 47 .] 4.6 2.3
RRN3 1/1 1631 1645 .. 655 669 .] 1.3 1.8
ComK 1/1 1642 1666 .. 1 25 [. 0.6 7.6
B5 1/1 1715 1735 .. 1 21 [. 3.2 2.5
Orbi_VP6 1/1 1750 1774 .. 7 31 .. -1.7 9.3
APG12 1/1 1752 1770 .. 1 25 [. 0.9 7.5
DUF1874 1/1 1804 1816 .. 110 122 .] 4.7 1.1
DUF648 1/1 1827 1848 .. 381 402 .] -0.5 7.6
CW_binding_1 1/16 1833 1847 .. 1 15 [. 4.8 2
CW_binding_1 2/16 1854 1868 .. 1 15 [. 11.3 0.018
CW_binding_1 3/16 1881 1894 .. 6 19 .] 8.3 0.16
SAE2 1/1 1936 1953 .. 1 18 [. 1.6 8.1
DUF246 1/1 1937 1951 .. 354 368 .] 1.5 2.5
CW_binding_1 4/16 1946 1965 .. 1 19 [] 2.7 9.5
MBD 1/1 1957 1975 .. 52 69 .. 1.9 5.6
CW_binding_1 5/16 1967 1985 .. 1 19 [] 18.3 0.0001
CW_binding_1 6/16 1987 2005 .. 1 19 [] 21.3 1.2e-05
CW_binding_1 7/16 2007 2025 .. 1 19 [] 6.7 0.5
CW_binding_1 8/16 2077 2093 .. 1 16 [. 4.4 2.8
CW_binding_1 9/16 2104 2117 .. 6 19 .] 12.4 0.0077
CW_binding_1 10/16 2119 2137 .. 1 19 [] 12.0 0.01
Pox_G5 1/1 2129 2138 .. 548 557 .] 0.9 0.74
Oscp1 1/1 2137 2151 .. 170 184 .] 2.5 2.9
CW_binding_1 11/16 2139 2157 .. 1 19 [] 7.3 0.34
DUF1672 1/1 2142 2170 .. 281 308 .] 0.1 5.5
RNA_pol_Rpb2_6 1/1 2145 2160 .. 145 160 .. -0.5 4.3
Peptidase_M9 1/1 2152 2169 .. 106 123 .. 0.0 5.8
MED6 1/1 2162 2175 .. 87 101 .] 0.6 9.8
CW_binding_1 12/16 2209 2226 .. 1 15 [. 7.4 0.3
Slx4 1/1 2234 2255 .. 894 917 .] -0.9 5.5
CW_binding_1 13/16 2238 2251 .. 6 19 .] 8.7 0.12
CW_binding_1 14/16 2253 2271 .. 1 19 [] 14.3 0.002
CW_binding_1 15/16 2274 2291 .. 2 19 .] 8.2 0.17
CW_binding_1 16/16 2323 2335 .. 1 13 [. 4.4 2.7
Alignments of top-scoring domains:
SelB-wing_2: domain 1 of 1, from 27 to 35: score 4.3, E = 3.7
*->lleaLaayH<-*
+l+aL++yH
gi|1687088 27 ILDALEEYH 35
Thr_dehydrat_C: domain 1 of 1, from 33 to 47: score 3.0, E = 2.9
CS EEECTTT-HHHHHCC
*->dyvdlsdneaakehL<-*
+y+++s n+++ ++L
gi|1687088 33 EYHNMSENTVVEKYL 47
Nrf1_DNA-bind: domain 1 of 1, from 53 to 78: score 4.7, E = 0.3
*->hALrkivinCYKyHGReDLLpaFaee<-*
+ L i i YK+ GR+ L +F+e
gi|1687088 53 NSLTDIYIDTYKKSGRNKALKKFKEY 78
UPF0254: domain 1 of 1, from 65 to 80: score 4.1, E = 0.79
*->ksGIkraLkllesflk<-*
ksG +aLk ++++l+
gi|1687088 65 KSGRNKALKKFKEYLV 80
Ham1p_like: domain 1 of 1, from 68 to 79: score 9.1, E = 0.026
CS HHHHHHHHHHHH
*->RgkALkklkkwL<-*
R kALkk+k++L
gi|1687088 68 RNKALKKFKEYL 79
LRR_1: domain 1 of 2, from 80 to 101: score 2.9, E = 9.3
CS T-EEEETTSSS.BCHSCHHHHHH HH
*->nLeeLdLsgCNPpsltgslpssl.nl<-*
e+L+L + N +lt +++++l+
gi|1687088 80 VTEVLELKN-N--NLT-PVEKNLhFV 101
Prenylcys_lyase: domain 1 of 1, from 130 to 142: score -0.4, E = 5.5
*->leetdwfiiNvlk<-*
+ +++ f+iN lk
gi|1687088 130 FYDSNAFLINTLK 142
DUF2226: domain 1 of 1, from 136 to 159: score -0.8, E = 7.4
*->MmlPkvLKeVVEseyvktLYEGsleE<-*
+ ++ K VVEs + tL +s++E
gi|1687088 136 FLINTLKKTVVESAINDTL--ESFRE 159
Invas_SpaK: domain 1 of 1, from 149 to 161: score 2.1, E = 8.4
CS BTTSS-EEEEETT
*->aigelvllfrene<-*
ai++ +++fren
gi|1687088 149 AINDTLESFRENL 161
ERF: domain 1 of 1, from 150 to 175: score 0.8, E = 7.5
*->lyqalakvqkelkqpkKdlkvtannpfgkypyyk<-*
++ +l ++++l+ p+ d +n+f++ +
gi|1687088 150 INDTLESFRENLNDPRFD-----YNKFFRK---R 175
Sec66: domain 1 of 1, from 169 to 202: score 4.0, E = 0.59
*->NqaLrrRldailkrkeeekelWelkldkiesgflke<-*
N+ +r+R++ i +++++++ + + ++ e+ l+
gi|1687088 169 NKFFRKRMEIIYDKQKNFINYYKAQRE--ENPELII 202
DUF1679: domain 1 of 1, from 201 to 213: score 0.8, E = 5.2
*->LlEDvikvHesnl<-*
+++D++k+++sn
gi|1687088 201 IIDDIVKTYLSNE 213
DUF965: domain 1 of 1, from 201 to 211: score 1.6, E = 4.3
*->ilEELvksYLk<-*
i+ +vk YL+
gi|1687088 201 IIDDIVKTYLS 211
Gly_transf_sug: domain 1 of 1, from 234 to 291: score 32.1, E = 4.5e-09
*->ydvilvtpdleslfkdtpaypwfqeafssardPGrwpKyynaaasDl
+ ++ +++e+ + ++++ ++qe rw+ + aaasD
gi|1687088 234 QNSGNDVRNFEEFKNGESFNLYEQELVE------RWN--L-AAASDI 271
lRlaiLykYGGiYlDtDvil<-*
lR+ L++ GG YlD D+ +
gi|1687088 272 LRISALKEIGGMYLDVDMLP 291
DUF2215: domain 1 of 1, from 239 to 258: score 0.7, E = 7.2
*->errrfasfvefgssfhltpne<-*
++r+f++f + g+sf+l++ e
gi|1687088 239 DVRNFEEFKN-GESFNLYEQE 258
Baculo_Y142: domain 1 of 1, from 324 to 342: score 0.9, E = 1.7
*->kpFIreYlknNfnaldDst<-*
k++I+eY++++f+ ld+++
gi|1687088 324 KEYIPEYTSEHFDMLDEEV 342
DUF972: domain 1 of 1, from 354 to 367: score 2.0, E = 4.5
*->MDKkeLFDqldeLE<-*
DK e+F +l ++E
gi|1687088 354 SDKSEIFSSLGDME 367
IFN-gamma: domain 1 of 1, from 387 to 405: score 0.2, E = 9.9
CS XXXXXXXXX-HCHHHHHHH
*->iLgssGcYCqdtfikeien<-*
++ + +YC ++k ien
gi|1687088 387 LISVKDSYCSNLIVKQIEN 405
Vac_Fusion: domain 1 of 1, from 399 to 414: score -0.3, E = 8.4
*->lfqlivkcCkrlneal<-*
++++i++++k+ln++l
gi|1687088 399 IVKQIENRYKILNNSL 414
XFP: domain 1 of 1, from 447 to 455: score 1.1, E = 5.3
*->trvLGkYlr<-*
+ +LGkYlr
gi|1687088 447 MMELGKYLR 455
DUF270: domain 1 of 1, from 453 to 457: score -3.7, E = 6.5
*->YLRlG<-*
YLR+G
gi|1687088 453 YLRVG 457
DUF2415: domain 1 of 1, from 480 to 501: score 6.0, E = 1.1
*->DLLviSEhqgrVHvi..DlRnl<-*
DLL + E++ ++H+i+ DlRn+
gi|1687088 480 DLLMFKEGSMNIHLIeaDLRNF 501
DUF2555: domain 1 of 1, from 503 to 519: score 2.2, E = 6.1
*->iskedleafteedvaeL<-*
isk +++ te++ a L
gi|1687088 503 ISKTNISQSTEQEMASL 519
Mo25: domain 1 of 1, from 558 to 571: score 2.7, E = 0.95
*->EKefiikqIesLpp<-*
+Ke++++ I+sL +
gi|1687088 558 DKEYLLEKISSLAR 571
Pro_CA: domain 1 of 1, from 620 to 632: score 1.3, E = 7.5
CS EEETTTTEEEEEE
*->vYdietGevevld<-*
+Y+ +Ge+ ++d
gi|1687088 620 YYNPGDGEIQEID 632
Clp_N: domain 1 of 1, from 664 to 680: score 3.8, E = 3.2
CS TTS-HHHHHHHHHHHHH
*->aGvdldalreaiekllg<-*
aG d+d l ++ie++++
gi|1687088 664 AGFDVDSLSTEIEAAID 680
Enterotoxin_a: domain 1 of 1, from 736 to 754: score 1.0, E = 4.4
CS HHHHGXXXXXHHHHHTTXX
*->llSdyqdefiiyngirdEL<-*
+ S +q e+ i+ +r EL
gi|1687088 736 IVSANQYEVRINSEGRREL 754
PalH: domain 1 of 1, from 772 to 785: score -0.3, E = 7.3
*->InnGdDmlfvdptsn<-*
I+ ++ ++++p++n
gi|1687088 772 ISS-KEYISFNPKEN 785
Pox_A14: domain 1 of 1, from 809 to 816: score 1.9, E = 9.4
*->NSSeIELN<-*
NSS+IEL
gi|1687088 809 NSSDIELE 816
DUF1992: domain 1 of 1, from 834 to 844: score 3.5, E = 4.2
*->eslvEerIreA<-*
+vEerI+eA
gi|1687088 834 TQIVEERIEEA 844
Flu_PB2: domain 1 of 1, from 839 to 851: score -1.5, E = 9.5
*->LerikelkrLlsds<-*
eri+e k+L sds
gi|1687088 839 -ERIEEAKNLTSDS 851
Phage_Cox: domain 1 of 1, from 851 to 869: score 2.3, E = 3.9
*->mqiPYmDaenkviespsDlv<-*
+i Y+ e k+ies sD++
gi|1687088 851 -SINYIKDEFKLIESISDAL 869
DUF2102: domain 1 of 1, from 855 to 870: score 1.3, E = 8.8
*->LEeEvklLpkIsrALe<-*
++ E+kl+++Is AL
gi|1687088 855 IKDEFKLIESISDALC 870
Not1: domain 1 of 1, from 873 to 892: score 2.3, E = 1.9
*->siLsELatirthdpedvles<-*
+++EL + +++ed++e+
gi|1687088 873 KQQNELEDSHFISFEDISET 892
B3: domain 1 of 1, from 874 to 904: score 2.0, E = 4.9
CS HHHT--TT-EEEEEE-SSSEEEEEEE--S--
*->kangLkaGDfvvFelvgnseftvvifrcsgc<-*
+ n L++ f+ Fe +++ ++ i++ +++
gi|1687088 874 QQNELEDSHFISFEDISETDEGFSIRFINKE 904
Lact_bio_phlase: domain 1 of 1, from 877 to 896: score -0.8, E = 5.8
*->diephHFitFedigekeGvLqGFLDaGY<-*
++e++HFi+Fedi+e D G+
gi|1687088 877 ELEDSHFISFEDISET--------DEGF 896
DUF1803: domain 1 of 1, from 906 to 920: score 2.8, E = 3
*->deqiWayvFideesliYqa<-*
+e+i F+++e++i+ +
gi|1687088 906 GESI----FVETEKTIFSE 920
Matrix: domain 1 of 1, from 918 to 934: score 1.3, E = 3.1
*->lrvydDvIidkikidkk<-*
+ +y+++I++ i ++k+
gi|1687088 918 FSEYANHITEEISKIKG 934
UPF0560: domain 1 of 1, from 983 to 990: score -2.1, E = 9.5
*->vtLKVQVs<-*
v KVQV+
gi|1687088 983 VAMKVQVY 990
Cyclin: domain 1 of 1, from 1009 to 1028: score -0.1, E = 9.5
*->dellesisrvlerllalnds<-*
+ ++ ++++++++l++l+++
gi|1687088 1009 ELVSTALDETIDLLPTLSEG 1028
Ins_allergen_rp: domain 1 of 1, from 1015 to 1024: score 3.2, E = 4.7
*->ldDflALlPv<-*
ld++++LlP+
gi|1687088 1015 LDETIDLLPT 1024
DUF533: domain 1 of 1, from 1053 to 1065: score 3.5, E = 1.2
*->dpaLveqlEaqvg<-*
dp L++++Ea +g
gi|1687088 1053 DPLLRQEIEAKIG 1065
Glyco_transf_64: domain 1 of 1, from 1124 to 1150: score 4.4, E = 0.61
*->FlpypeIeTdAVLslDDD.illstdel<-*
F+ + +eT+ V+ l DD+i++++d+l
gi|1687088 1124 FKHVSLVETEGVFTLLDDkIMMPQDDL 1150
Peptidase_M28: domain 1 of 1, from 1178 to 1194: score 0.9, E = 4.9
CS TSTT-SCCC S-CCCHH
*->HtpaDtldn.idpdtlq<-*
Ht D++d+ +++++
gi|1687088 1178 HTVTDDIDHfFSAPSIT 1194
UbiD: domain 1 of 1, from 1217 to 1229: score 1.4, E = 1.9
*->rDlvIipnapgds<-*
+Dl+++pnap+
gi|1687088 1217 KDLMVLPNAPNRV 1229
Neugrin: domain 1 of 1, from 1220 to 1233: score -0.3, E = 7.2
*->mEAPGAPPRtLtWE<-*
m P AP R WE
gi|1687088 1220 MVLPNAPNRVFAWE 1233
Ssl1: domain 1 of 1, from 1228 to 1242: score -2.7, E = 8.3
*->kgYtWEggYvdGeRs<-*
+ +WE+g G+Rs
gi|1687088 1228 RVFAWETGWTPGLRS 1242
PDEase_I: domain 1 of 1, from 1241 to 1258: score -0.9, E = 8.9
*->dvvekDdiqplldtiedNr<-*
++ e d+++lld+i dN
gi|1687088 1241 RSLEN-DGTKLLDRIRDNY 1258
Peptidase_U49: domain 1 of 1, from 1252 to 1268: score 0.4, E = 7.9
*->dRIeaniskLqleendeiwlalc<-*
dRI++n e++++w +++
gi|1687088 1252 DRIRDN------YEGEFYWRYFA 1268
Thiol_cytolysin: domain 1 of 1, from 1276 to 1286: score -0.2, E = 7.1
*->TTLYPkvsdtv<-*
TTL P+++dt
gi|1687088 1276 TTLKPRYEDTN 1286
DUF1779: domain 1 of 1, from 1301 to 1307: score 4.4, E = 0.068
*->PIITtEY<-*
PIITtEY
gi|1687088 1301 PIITTEY 1307
S4: domain 1 of 1, from 1355 to 1368: score 3.5, E = 6.3
CS --TTTBEETTTCEE
*->vkdpsyrVkpgDei<-*
v++ s+++k gD i
gi|1687088 1355 VTIESDKIKKGDLI 1368
Endonuc-FokI_C: domain 1 of 1, from 1374 to 1391: score 0.4, E = 4.8
CS S--HHHHHTT-SSSB---
*->klskkEVkkkildyeIsy<-*
+ls +E k ++ eI++
gi|1687088 1374 TLSIEENKIILNSHEINF 1391
DUF2124: domain 1 of 1, from 1412 to 1420: score 1.4, E = 5.8
*->IDadIePVtV<-*
I+a+Ie V++
gi|1687088 1412 INAIIE-VDL 1420
LRR_1: domain 2 of 2, from 1432 to 1453: score 1.4, E = 24
CS T-EEEETTSSS.BCHSCH HHHHH HH
*->nLeeLdLsgCNPpsltgs.lpssl.nl<-*
L+ L L++ N +++ ++++ ++ +
gi|1687088 1432 ELKILMLNS-N--HIQ-QkIDY-IgFN 1453
Cohesin: domain 1 of 1, from 1503 to 1526: score 1.8, E = 5.8
CS EEEEECCCTCE-C-EEEE.E-EEES-
*->sslgafddntlteisvvtatnGsvtV<-*
+ ++ +++n+l++++v+t + v++
gi|1687088 1503 KPSFGYYSNNLKDVKVIT-KDN-VNI 1526
Peptidase_M24: domain 1 of 1, from 1518 to 1529: score 0.1, E = 9.3
CS EECSSCEECSTC
*->vVtedGfenLTf<-*
v+t+d++ +LT
gi|1687088 1518 VITKDNVNILTG 1529
A2M: domain 1 of 1, from 1531 to 1542: score 0.6, E = 9.6
*->YldkcikVrVtL<-*
Yl+++ik+++ L
gi|1687088 1531 YLKDDIKISLSL 1542
RnaseA: domain 1 of 1, from 1555 to 1561: score 0.5, E = 7
CS EEEEEEC
*->VHFDasv<-*
VH+D+s+
gi|1687088 1555 VHLDESG 1561
Porin_2: domain 1 of 1, from 1588 to 1594: score 0.6, E = 4.9
*->MNItKSLL<-*
MNI KS++
gi|1687088 1588 MNI-KSIF 1594
DUF807: domain 1 of 1, from 1605 to 1619: score 4.2, E = 0.64
*->mLaAhLiFsGqipiG<-*
+L A+ i sG ++iG
gi|1687088 1605 ILDANFIISGTTSIG 1619
Surp: domain 1 of 1, from 1620 to 1638: score 4.6, E = 2.3
CS GG-TTT-SSSSHHHHHHHH
*->rFnFLkpsndplhkYYkkk<-*
+F+F+ ++nd+ ++Y+ k+
gi|1687088 1620 QFEFICDENDNIQPYFIKF 1638
RRN3: domain 1 of 1, from 1631 to 1645: score 1.3, E = 1.8
*->ispnyiewSevkgdy<-*
i+p++i++ + + y
gi|1687088 1631 IQPYFIKFNTLETNY 1645
ComK: domain 1 of 1, from 1642 to 1666: score 0.6, E = 7.6
*->diskeiYevnkgtmvilPkyDesdq<-*
+ Y+ n m++ P yD +d+
gi|1687088 1642 ETNYTLYVGNRQNMIVEPNYDLDDS 1666
B5: domain 1 of 1, from 1715 to 1735: score 3.2, E = 2.5
CS ---EEE-HHHHHHHHT----H
*->prtitlrlerinrlLGlelsa<-*
p +i l++ +in+ + +++ +
gi|1687088 1715 PEVIVLDANYINEKINVNIND 1735
Orbi_VP6: domain 1 of 1, from 1750 to 1774: score -1.7, E = 9.3
*->VikrsseeLkqRqIqinlvdwfese<-*
++ + see k q++i++v+ f+++
gi|1687088 1750 ILMSTSEENKVSQVKIRFVNVFKDK 1774
APG12: domain 1 of 1, from 1752 to 1770: score 0.9, E = 7.5
CS ----------E......EEEEEEEE
*->asTerpkSdkkeKNiqKvqirLkAi<-*
+sT++++ ++ v ir+ ++
gi|1687088 1752 MSTSEENKVSQ------VKIRFVNV 1770
DUF1874: domain 1 of 1, from 1804 to 1816: score 4.7, E = 1.1
*->YedGkIgyslylv<-*
YedG Igy+l lv
gi|1687088 1804 YEDGLIGYDLGLV 1816
DUF648: domain 1 of 1, from 1827 to 1848: score -0.5, E = 7.6
*->sfqkvGgivliytdslplqkpf<-*
+f ++ +++++ dsl kp+
gi|1687088 1827 NFGMMVSGLIYINDSLYYFKPP 1848
CW_binding_1: domain 1 of 16, from 1833 to 1847: score 4.8, E = 2
CS SEEEEETTEEEEEET
*->ngWikdngnWYYfds<-*
+g i++n++ YYf++
gi|1687088 1833 SGLIYINDSLYYFKP 1847
CW_binding_1: domain 2 of 16, from 1854 to 1868: score 11.3, E = 0.018
CS SEEEEETTEEEEEET
*->ngWikdngnWYYfds<-*
+g++++++++YYf++
gi|1687088 1854 TGFVTVGDDKYYFNP 1868
CW_binding_1: domain 3 of 16, from 1881 to 1894: score 8.3, E = 0.16
CS ETTEEEEEETTSCB
*->dngnWYYfdsdGkm<-*
++++ YYf+++G++
gi|1687088 1881 IDDKNYYFNQSGVL 1894
SAE2: domain 1 of 1, from 1936 to 1953: score 1.6, E = 8.1
*->fafdevvRkkdeRkcldG<-*
+ fd + R+ e+k+ldG
gi|1687088 1936 YYFDDNYRGAVEWKELDG 1953
DUF246: domain 1 of 1, from 1937 to 1951: score 1.5, E = 2.5
*->LfdnnsegvmtwseF<-*
+fd+n++g+ +w+e+
gi|1687088 1937 YFDDNYRGAVEWKEL 1951
CW_binding_1: domain 4 of 16, from 1946 to 1965: score 2.7, E = 9.5
CS SEEEEETTEEEEE ETTSCB
*->ngWikdngnWYYf.dsdGkm<-*
+W++ +g +Yf+ ++Gk+
gi|1687088 1946 VEWKELDGEMHYFsPETGKA 1965
MBD: domain 1 of 1, from 1957 to 1975: score 1.9, E = 5.6
*->YysP.tGkklrsksevarY<-*
Y+sP+tGk+++ +++ +Y
gi|1687088 1957 YFSPeTGKAFKGLNQIGDY 1975
CW_binding_1: domain 5 of 16, from 1967 to 1985: score 18.3, E = 0.0001
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g ++++ +YYf+sdG+m
gi|1687088 1967 KGLNQIGDYKYYFNSDGVM 1985
CW_binding_1: domain 6 of 16, from 1987 to 2005: score 21.3, E = 1.2e-05
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g++ +n+n++Yfd++G+m
gi|1687088 1987 KGFVSINDNKHYFDDSGVM 2005
CW_binding_1: domain 7 of 16, from 2007 to 2025: score 6.7, E = 0.5
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
g+ +++g+ +Yf ++G+m
gi|1687088 2007 VGYTEIDGKHFYFAENGEM 2025
CW_binding_1: domain 8 of 16, from 2077 to 2093: score 4.4, E = 2.8
CS SEEEEE TTEEEEEETT
*->ngWikd.ngnWYYfdsd<-*
gW+ ++g++YYfd+d
gi|1687088 2077 VGWKDLeDGSKYYFDED 2093
CW_binding_1: domain 9 of 16, from 2104 to 2117: score 12.4, E = 0.0077
CS ETTEEEEEETTSCB
*->dngnWYYfdsdGkm<-*
+n++ YYf++dG m
gi|1687088 2104 INDGQYYFNDDGIM 2117
CW_binding_1: domain 10 of 16, from 2119 to 2137: score 12.0, E = 0.01
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
g++++n++ +Yf ++G +
gi|1687088 2119 VGFVTINDKVFYFSDSGII 2137
Pox_G5: domain 1 of 1, from 2129 to 2138: score 0.9, E = 0.74
*->FYFnksiiIk<-*
FYF++s iI+
gi|1687088 2129 FYFSDSGIIE 2138
Oscp1: domain 1 of 1, from 2137 to 2151: score 2.5, E = 2.9
*->ledgvQnRqdGsFvl<-*
+e+gvQn +d +F++
gi|1687088 2137 IESGVQNIDDNYFYI 2151
CW_binding_1: domain 11 of 16, from 2139 to 2157: score 7.3, E = 0.34
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g +++++n++Y+d++G
gi|1687088 2139 SGVQNIDDNYFYIDDNGIV 2157
DUF1672: domain 1 of 1, from 2142 to 2170: score 0.1, E = 5.5
*->pkintnranysdnepieygVfkh.dgfke<-*
+ i n +++dn ++++gVf+ +dg+k
gi|1687088 2142 QNIDDNYFYIDDNGIVQIGVFDTsDGYKY 2170
RNA_pol_Rpb2_6: domain 1 of 1, from 2145 to 2160: score -0.5, E = 4.3
CS CCCHCCB-TTSBB-TT
RF xxxxxxxxxxxxxxxx
*->eaalrkLDedGIvrvG<-*
++++ ++D++GIv +G
gi|1687088 2145 DDNYFYIDDNGIVQIG 2160
Peptidase_M9: domain 1 of 1, from 2152 to 2169: score 0.0, E = 5.8
*->DgntrveVgvfvseedyk<-*
D n +v+ gvf++++ yk
gi|1687088 2152 DDNGIVQIGVFDTSDGYK 2169
MED6: domain 1 of 1, from 2162 to 2175: score 0.6, E = 9.8
*->fnPsqnGysyPelsn<-*
f++s+ Gy y+ +n
gi|1687088 2162 FDTSD-GYKYFAPAN 2175
CW_binding_1: domain 12 of 16, from 2209 to 2226: score 7.4, E = 0.3
CS SEEEEE T TEEEEEET
*->ngWikd..n.gnWYYfds<-*
+gWi+d +n++++YYf++
gi|1687088 2209 TGWIYDmeNeSDKYYFNP 2226
Slx4: domain 1 of 1, from 2234 to 2255: score -0.9, E = 5.5
*->fVeLiDDslIreWcDklGIclrnd<-*
++ LiDD I+ + D+ GI ++
gi|1687088 2234 GINLIDD--IKYYFDEKGIMRTGL 2255
CW_binding_1: domain 13 of 16, from 2238 to 2251: score 8.7, E = 0.12
CS ETTEEEEEETTSCB
*->dngnWYYfdsdGkm<-*
+++ +YYfd++G m
gi|1687088 2238 IDDIKYYFDEKGIM 2251
CW_binding_1: domain 14 of 16, from 2253 to 2271: score 14.3, E = 0.002
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g i +n YYf+++G+m
gi|1687088 2253 TGLISFENNNYYFNENGEM 2271
CW_binding_1: domain 15 of 16, from 2274 to 2291: score 8.2, E = 0.17
CS EEEEETTEEEEEETTSCB
*->gWikdngnWYYfdsdGkm<-*
g+i++ ++ +Yf +dG+m
gi|1687088 2274 GYINIEDKMFYFGEDGVM 2291
CW_binding_1: domain 16 of 16, from 2323 to 2335: score 4.4, E = 2.7
CS SEEEEETTEEEEE
*->ngWikdngnWYYf<-*
+gW +++ YYf
gi|1687088 2323 TGWLDLDEKRYYF 2335
//