hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 168800353.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|168800353|ref|ZP_02825360.1|
Accession: [none]
Description: RhsG core protein with extension [Escherichia coli O157:H7 str. EC508]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RHS RHS protein 86.4 8.2e-27 1
RHS_repeat RHS Repeat 14.1 0.0038 3
gp12-short_mid Phage short tail fibre protein gp12, 4.2 0.96 1
UPF0278 UPF0278 family 4.0 1.3 1
Ribosomal_S7 Ribosomal protein S7p/S5e 3.9 1.4 1
DMAP_binding DMAP1-binding Domain 4.4 1.8 1
zf-XS XS zinc finger domain 2.8 2 1
DUF300 Domain of unknown function 1.4 2.5 1
DUF485 Protein of unknown function, DUF485 3.8 2.9 1
MEF2_binding MEF2 binding 3.4 3.3 1
AMNp_N Bacterial AMP nucleoside phosphorylas 1.9 5 1
Ring_hydroxyl_A Ring hydroxylating alpha subunit (cat 0.5 5.7 1
ANT Phage antirepressor protein KilAC dom 2.1 5.9 1
SH3_3 Bacterial SH3 domain 2.7 6.5 1
NusG Transcription termination factor nusG 1.8 8.6 1
E_Pc_C Enhancer of Polycomb C-terminus -1.3 8.9 1
UPF0175 Uncharacterised protein family (UPF01 1.8 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF300 1/1 43 63 .. 294 315 .] 1.4 2.5
RHS_repeat 1/3 48 94 .. 1 44 [] 8.6 0.14
RHS_repeat 2/3 95 119 .. 16 44 .] 3.1 5.2
zf-XS 1/1 177 184 .. 39 46 .] 2.8 2
DMAP_binding 1/1 191 218 .. 1 28 [. 4.4 1.8
UPF0175 1/1 194 211 .. 1 20 [. 1.8 9.7
MEF2_binding 1/1 212 242 .. 6 35 .] 3.4 3.3
E_Pc_C 1/1 227 232 .. 1 6 [. -1.3 8.9
RHS 1/1 247 287 .. 1 41 [] 86.4 8.2e-27
Ring_hydroxyl_A 1/1 266 286 .. 278 298 .] 0.5 5.7
RHS_repeat 3/3 273 290 .. 22 44 .] 2.5 7.6
SH3_3 1/1 367 375 .. 1 9 [. 2.7 6.5
gp12-short_mid 1/1 376 389 .. 1 14 [. 4.2 0.96
NusG 1/1 380 392 .. 93 108 .] 1.8 8.6
DUF485 1/1 409 417 .. 1 9 [. 3.8 2.9
ANT 1/1 428 446 .. 100 118 .] 2.1 5.9
Ribosomal_S7 1/1 429 443 .. 126 140 .. 3.9 1.4
UPF0278 1/1 439 452 .. 177 190 .. 4.0 1.3
AMNp_N 1/1 478 490 .. 153 165 .] 1.9 5
Alignments of top-scoring domains:
DUF300: domain 1 of 1, from 43 to 63: score 1.4, E = 2.5
*->lYAFpykpYagetvsggakrsv<-*
+Y+++y +Y++ ++ +++++++
gi|1688003 43 HYVYRYDEYGRLAE-KTDRIPE 63
RHS_repeat: domain 1 of 3, from 48 to 94: score 8.6, E = 0.14
*->YDanGrLtavtd.......psgpvgq.tYrYDaagrltaltlttstd
YD+ GrL ++td+ +++ + +++++Y+YD+ +rl+ + t
gi|1688003 48 YDEYGRLAEKTDripegviRMHDERThHYHYDSQHRLVFH-----TR 89
asGtt<-*
++ +
gi|1688003 90 IQHGE 94
RHS_repeat: domain 2 of 3, from 95 to 119: score 3.1, E = 5.2
*->pvgq.tYrYDaagrltaltlttstdasGtt<-*
p+++++Y YD++gr+t + + ++
gi|1688003 95 PQVEsRYLYDPLGRRTGK-----RVWRRER 119
zf-XS: domain 1 of 1, from 177 to 184: score 2.8, E = 2
*->KAsHrALa<-*
KA+Hr La
gi|1688003 177 KARHRSLA 184
DMAP_binding: domain 1 of 1, from 191 to 218: score 4.4, E = 1.8
*->eaasLPaeVreRLaeLdldLsegdiTeK<-*
+ +LPae+ L L+++L +g+ +e+
gi|1688003 191 TGVTLPAELAVMLGRLERELRQGSVSEE 218
UPF0175: domain 1 of 1, from 194 to 211: score 1.8, E = 9.7
*->kvPerlrellgekRlekElr<-*
+P l + lg+ le+Elr
gi|1688003 194 TLPAELAVMLGR--LERELR 211
MEF2_binding: domain 1 of 1, from 212 to 242: score 3.4, E = 3.3
*->KGsisEEtKqKLKsviLsa.qsAAtvkKesL<-*
+Gs+sEE +q L + L a+q AA+ e +
gi|1688003 212 QGSVSEESQQWLAQCGLTAeQMAAQLEAEYI 242
E_Pc_C: domain 1 of 1, from 227 to 232: score -1.3, E = 8.9
*->afTaEQ<-*
++TaEQ
gi|1688003 227 GLTAEQ 232
RHS: domain 1 of 1, from 247 to 287: score 86.4, E = 8.2e-27
*->vyYYHtDqiGtPLeLtdseGeivWqArYdaWGnvleEevsq<-*
+++YH+D++G+PL+L+++eGe++Wq++Yd+WGn+l E ++q
gi|1688003 247 LHLYHCDHRGLPLALISPEGETAWQGEYDEWGNLLGETSAQ 287
Ring_hydroxyl_A: domain 1 of 1, from 266 to 286: score 0.5, E = 5.7
*->sEtaaRGfYrhWqrmmssssW<-*
+Eta G Y +W ++++ s
gi|1688003 266 GETAWQGEYDEWGNLLGETSA 286
RHS_repeat: domain 3 of 3, from 273 to 290: score 2.5, E = 7.6
*->rYDaagrltaltlttstdasGtt<-*
+YD++g+l t+a++
gi|1688003 273 EYDEWGNLLGE-----TSAQHLQ 290
SH3_3: domain 1 of 1, from 367 to 375: score 2.7, E = 6.5
*->ssLNVRsgP<-*
+sLNVR+ P
gi|1688003 367 GSLNVREFP 375
gp12-short_mid: domain 1 of 1, from 376 to 389: score 4.2, E = 0.96
CS -HHHHTTSB--SSS
*->TGeTLNGRGaTtSM<-*
TG T G G+ tSM
gi|1688003 376 TGFTVGGHGSPTSM 389
NusG: domain 1 of 1, from 380 to 392: score 1.8, E = 8.6
CS SS-...----EE--HH
*->vGgggtgskPtpisde<-*
vGg+g Pt +sd+
gi|1688003 380 VGGHG---SPTSMSDD 392
DUF485: domain 1 of 1, from 409 to 417: score 3.8, E = 2.9
*->iqanPkFqe<-*
i+anPk++e
gi|1688003 409 IRANPKYHE 417
ANT: domain 1 of 1, from 428 to 446: score 2.1, E = 5.9
*->TgKGqqylinkLlkeggla<-*
TgKG +++kL++e
gi|1688003 428 TGKGKNSFAQKLANELDAT 446
Ribosomal_S7: domain 1 of 1, from 429 to 443: score 3.9, E = 1.4
CS SSH...HHHHHHHHH
*->eKskksmaekLAnEl<-*
+K k s+a+kLAnEl
gi|1688003 429 GKGKNSFAQKLANEL 443
UPF0278: domain 1 of 1, from 439 to 452: score 4.0, E = 1.3
*->LAkELDAaVVasDe<-*
LA ELDA+V+a De
gi|1688003 439 LANELDATVIAPDE 452
AMNp_N: domain 1 of 1, from 478 to 490: score 1.9, E = 5
*->NGtyepapGeplP<-*
NG +e p+e +P
gi|1688003 478 NGVFELVPDEKQP 490
//