hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 170023074.fa
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Query sequence: gi|170023074|ref|YP_001719579.1|
Accession: [none]
Description: virulence determinant [Yersinia pseudotuberculosis YPIII]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FG-GAP FG-GAP repeat 39.4 1.6e-10 4
HemolysinCabind Hemolysin-type calcium-binding repeat 28.8 1.4e-07 3
DUF2072 Zn-ribbon containing protein (DUF2072 4.7 0.29 1
DUF885 Bacterial protein of unknown function 3.7 0.4 1
DUF1970 Domain of unknown function (DUF1970) 3.0 0.49 1
Glyco_hydro_26 Glycosyl hydrolase family 26 4.1 0.53 1
MAM1 Monopolin complex protein MAM1 4.0 0.59 1
Gtr1_RagA Gtr1/RagA G protein conserved region 4.2 0.66 1
ATP-synt ATP synthase 2.6 0.66 1
RecO Recombination protein O 3.6 0.84 1
SDH_beta Serine dehydratase beta chain 4.2 0.84 1
zf-DBF DBF zinc finger 5.6 1 1
Phage_Gp15 Bacteriophage Gp15 protein 1.9 1 1
DUF1248 Protein of unknown function (DUF1248) 3.0 1.1 1
KNOX2 KNOX2 domain 5.3 1.1 1
DUF1108 Protein of unknown function (DUF1108) 0.9 1.1 1
Cw-hydrolase Cell wall-associated hydrolase 4.0 1.2 1
CIA30 Complex I intermediate-associated pro 3.1 1.3 1
Orthopox_F7 Orthopoxvirus F7 protein 3.0 1.4 1
DUF975 Protein of unknown function (DUF975) 2.7 1.4 1
DUF1974 Domain of unknown function (DUF1974) 1.3 1.5 1
DUF1767 Domain of unknown function (DUF1767) 3.8 1.6 1
DUF1814 Domain of unknown function (DUF1814) 2.5 1.7 1
Pox_ser-thr_kin Poxvirus serine/threonine protein kin 2.3 1.8 1
eIF-4B Plant specific eukaryotic initiation -1.7 1.9 1
STAG STAG domain 3.0 2 1
PepSY_TM PepSY-associated TM helix 5.8 2 1
LNS2 LNS2 (Lipin/Ned1/Smp2) 2.3 2.3 1
ERO1 Endoplasmic Reticulum Oxidoreductin 1 1.4 2.3 1
UBA_2 Ubiquitin associated domain (UBA) 2.9 2.8 1
DUF867 Protein of unknown function (DUF867) 2.2 3.1 1
DUF2002 Protein of unknown function (DUF2002) 1.9 3.1 1
T-box T-box 1.1 3.4 1
PC_rep Proteasome/cyclosome repeat 3.6 3.7 1
DUF1973 Domain of unknown function (DUF1973) -0.0 3.8 1
BRK BRK domain 3.6 3.8 1
Toprim_N DNA primase catalytic core, N-termina 2.7 3.8 1
Sas10_Utp3_C Sas10 C-terminal domain 3.5 3.9 1
Mtr2 Nuclear pore RNA shuttling protein Mt 1.2 4 1
Nitr_red_assoc Conserved nitrate reductase-associate 0.8 4 1
SH2 SH2 domain 2.0 4.1 1
WaaY Lipopolysaccharide core biosynthesis 1.6 4.1 1
UPF0147 Uncharacterised protein family (UPF01 3.7 4.2 1
TMP-TENI Thiamine monophosphate synthase/TENI 1.6 4.3 1
UbiD 3-octaprenyl-4-hydroxybenzoate carbox 0.2 4.5 1
DUF1113 Protein of unknown function (DUF1113) 1.5 4.7 1
CUT CUT domain 2.6 4.9 1
CaM_bdg_C0 Calmodulin-binding domain C0 of NMDA 2.5 5 1
Ninjurin Ninjurin 1.1 5.1 1
IMS impB/mucB/samB family 0.5 5.1 1
VHS VHS domain 2.0 5.3 1
DUF1997 Protein of unknown function (DUF1997) 1.4 5.3 1
PSP1 PSP1 C-terminal conserved region 1.8 5.4 1
DUF2328 Uncharacterized protein conserved in 0.4 5.4 1
CBM_4_9 Carbohydrate binding domain 1.6 5.5 1
EST1_DNA_bind Est1 DNA/RNA binding domain 2.1 5.5 2
DUF2213 Uncharacterized protein conserved in 1.4 5.5 1
RasGAP_C RasGAP C-terminus 1.7 5.5 1
VDRIP Vitamin-D-receptor interacting protei -0.6 5.7 1
Shigella_OspC Shigella flexneri OspC protein -0.1 5.7 1
GntP_permease GntP family permease 0.3 5.8 1
Formyl_trans_C Formyl transferase, C-terminal domain 2.0 5.8 1
Phage_sheath_1 Phage tail sheath protein -0.9 6.1 1
Cas_Csm6 CRISPR-associated protein (Cas_Csm6) 0.1 6.2 1
Cas_Cas2CT1978 CRISPR-associated protein (Cas_Cas2CT 1.7 6.3 1
Ax_dynein_light Axonemal dynein light chain 1.3 6.4 1
Lipoprotein_17 Lipoprotein associated domain 2.5 6.4 1
CFEM CFEM domain 2.1 6.5 1
MecA_N NTF2-like N-terminal transpeptidase d 1.8 6.5 1
PP2C Protein phosphatase 2C 0.7 6.5 1
ATG11 Autophagy-related protein 11 0.8 6.7 1
PKI cAMP-dependent protein kinase inhibit 1.4 6.8 1
Gp49 Phage derived protein Gp49-like (DUF8 2.7 6.9 1
essB Predicted membrane protein essB 0.7 7 1
HTS Homoserine O-succinyltransferase -1.1 7.1 1
PP2A_B_N Serine-threonine phosphatase 2A subun 1.0 7.1 1
Mad3_BUB1_II Mad3/BUB1 homology region 2 2.1 7.2 1
GnsAB GnsA/GnsB family 1.9 7.4 1
OstA_C Organic solvent tolerance protein -0.2 7.4 1
DUF1002 Protein of unknown function (DUF1002) 1.0 7.6 1
Peptidase_S55 SpoIVB peptidase S55 0.8 7.9 1
TYW3 Methyltransferase TYW3 0.6 8 1
Queuosine_synth Queuosine biosynthesis protein 0.3 8 1
Peptidase_U57 YabG peptidase U57 0.2 8.4 1
Mqo Malate:quinone oxidoreductase (Mqo) -0.6 8.5 1
UspB Universal stress protein B (UspB) 1.6 8.5 1
Phage_integr_N Phage integrase, N-terminal SAM-like 1.6 8.6 1
U3_assoc_6 U3 small nucleolar RNA-associated pro 1.7 8.8 1
Cytochrom_C552 Cytochrome c552 -1.5 8.9 1
SPC25 Microsomal signal peptidase 25 kDa su 0.3 8.9 1
DUF2599 Protein of unknown function (DUF2599) 0.0 9 1
TmoB Toluene-4-monooxygenase system protei 0.8 9.1 1
DUF1322 Protein of unknown function (DUF1322) 1.2 9.1 1
Crp Bacterial regulatory proteins, crp fa 2.6 9.1 1
DED Death effector domain 1.5 9.4 1
aPHC Alkaline phytoceramidase (aPHC) -0.6 9.4 1
MACPF MAC/Perforin domain -0.5 9.6 1
SIS SIS domain 1.6 9.6 1
VWA von Willebrand factor type A domain -0.2 9.6 1
Supt5 Supt5 repeat 2.4 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF1973 1/1 2 23 .. 53 77 .. -0.0 3.8
CBM_4_9 1/1 10 20 .. 162 172 .] 1.6 5.5
Mad3_BUB1_II 1/1 16 38 .. 74 99 .] 2.1 7.2
TYW3 1/1 37 52 .. 211 226 .] 0.6 8
VDRIP 1/1 37 52 .. 1 18 [. -0.6 5.7
Cas_Csm6 1/1 87 107 .. 393 413 .] 0.1 6.2
CaM_bdg_C0 1/1 140 147 .. 22 29 .] 2.5 5
CFEM 1/1 196 205 .. 61 70 .] 2.1 6.5
Crp 1/1 236 246 .. 23 33 .] 2.6 9.1
DUF1997 1/1 289 304 .. 175 189 .] 1.4 5.3
Supt5 1/1 308 319 .. 41 52 .] 2.4 9.9
Pox_ser-thr_kin 1/1 317 349 .. 37 70 .. 2.3 1.8
HTS 1/1 320 334 .. 1 15 [. -1.1 7.1
Ax_dynein_light 1/1 325 347 .. 169 191 .] 1.3 6.4
KNOX2 1/1 336 349 .. 43 56 .] 5.3 1.1
ERO1 1/1 338 352 .. 1 21 [. 1.4 2.3
STAG 1/1 357 371 .. 116 130 .] 3.0 2
MAM1 1/1 386 399 .. 400 413 .] 4.0 0.59
LNS2 1/1 445 458 .. 1 11 [. 2.3 2.3
DUF975 1/1 468 482 .. 1 18 [. 2.7 1.4
VWA 1/1 469 507 .. 152 196 .] -0.2 9.6
WaaY 1/1 530 547 .. 1 18 [. 1.6 4.1
Queuosine_synth 1/1 534 543 .. 1 10 [. 0.3 8
TMP-TENI 1/1 559 572 .. 1 14 [. 1.6 4.3
Gtr1_RagA 1/1 561 589 .. 215 238 .] 4.2 0.66
Peptidase_S55 1/1 610 629 .. 109 128 .. 0.8 7.9
UbiD 1/1 669 681 .. 1 13 [. 0.2 4.5
zf-DBF 1/1 691 705 .. 35 49 .] 5.6 1
DED 1/1 712 725 .. 1 14 [. 1.5 9.4
DUF1970 1/1 714 732 .. 91 109 .. 3.0 0.49
essB 1/1 714 730 .. 348 364 .] 0.7 7
VHS 1/1 714 744 .. 120 153 .] 2.0 5.3
DUF1002 1/1 716 734 .. 230 248 .] 1.0 7.6
DUF1322 1/1 716 737 .. 1 22 [. 1.2 9.1
Phage_Gp15 1/1 725 739 .. 173 187 .] 1.9 1
UBA_2 1/1 729 740 .. 44 55 .. 2.9 2.8
PP2C 1/1 816 824 .. 295 303 .] 0.7 6.5
RasGAP_C 1/1 936 947 .. 138 149 .] 1.7 5.5
MACPF 1/1 966 984 .. 237 258 .] -0.5 9.6
ATP-synt 1/1 967 977 .. 1 13 [. 2.6 0.66
SH2 1/1 976 984 .. 74 82 .] 2.0 4.1
Mqo 1/1 1031 1046 .. 211 227 .. -0.6 8.5
SPC25 1/1 1060 1076 .. 1 18 [. 0.3 8.9
T-box 1/1 1143 1152 .. 172 181 .. 1.1 3.4
Formyl_trans_C 1/1 1151 1161 .. 1 11 [. 2.0 5.8
Phage_sheath_1 1/1 1185 1200 .. 681 696 .] -0.9 6.1
Phage_integr_N 1/1 1191 1201 .. 1 11 [. 1.6 8.6
Sas10_Utp3_C 1/1 1239 1250 .. 67 78 .] 3.5 3.9
aPHC 1/1 1286 1293 .. 1 8 [. -0.6 9.4
DUF2213 1/1 1294 1304 .. 1 11 [. 1.4 5.5
ATG11 1/1 1310 1331 .. 1 22 [. 0.8 6.7
DUF1113 1/1 1317 1343 .. 225 252 .] 1.5 4.7
MecA_N 1/1 1335 1343 .. 119 127 .] 1.8 6.5
Cytochrom_C552 1/1 1346 1367 .. 466 487 .] -1.5 8.9
PP2A_B_N 1/1 1382 1401 .. 54 73 .] 1.0 7.1
Cas_Cas2CT1978 1/1 1386 1399 .. 77 90 .] 1.7 6.3
GnsAB 1/1 1472 1486 .. 1 15 [. 1.9 7.4
eIF-4B 1/1 1489 1498 .. 1 12 [. -1.7 1.9
DUF867 1/1 1587 1601 .. 1 15 [. 2.2 3.1
GntP_permease 1/1 1609 1629 .. 444 465 .] 0.3 5.8
PC_rep 1/1 1615 1625 .. 1 11 [. 3.6 3.7
DUF2328 1/1 1623 1645 .. 166 188 .] 0.4 5.4
PepSY_TM 1/1 1628 1651 .. 1 34 [] 5.8 2
UPF0147 1/1 1652 1664 .. 75 87 .] 3.7 4.2
Orthopox_F7 1/1 1692 1707 .. 67 82 .] 3.0 1.4
Cw-hydrolase 1/1 1702 1740 .. 1 39 [. 4.0 1.2
Nitr_red_assoc 1/1 1811 1821 .. 136 146 .] 0.8 4
PKI 1/1 1821 1834 .. 1 14 [. 1.4 6.8
FG-GAP 1/4 1826 1851 .. 1 36 [] 8.8 0.14
DUF1974 1/1 1903 1910 .. 281 288 .] 1.3 1.5
FG-GAP 2/4 1912 1942 .. 1 36 [] 9.4 0.096
TmoB 1/1 1914 1930 .. 1 19 [. 0.8 9.1
Gp49 1/1 1923 1935 .. 1 13 [. 2.7 6.9
IMS 1/1 1959 1994 .. 415 450 .] 0.5 5.1
FG-GAP 3/4 1982 2007 .. 5 36 .] 12.6 0.011
FG-GAP 4/4 2036 2066 .. 1 36 [] 8.7 0.15
DUF2072 1/1 2071 2085 .. 137 151 .] 4.7 0.29
SIS 1/1 2160 2173 .. 1 14 [. 1.6 9.6
HemolysinCabind 1/3 2198 2208 .. 8 18 .] 7.6 0.4
DUF1767 1/1 2218 2233 .. 90 106 .] 3.8 1.6
EST1_DNA_bind 1/2 2245 2261 .. 59 75 .] 1.0 13
DUF2002 1/1 2266 2278 .. 104 116 .] 1.9 3.1
HemolysinCabind 2/3 2269 2286 .. 1 18 [] 14.9 0.0023
U3_assoc_6 1/1 2302 2317 .. 73 88 .] 1.7 8.8
Lipoprotein_17 1/1 2334 2349 .. 1 16 [. 2.5 6.4
DUF1248 1/1 2347 2357 .. 1 11 [. 3.0 1.1
OstA_C 1/1 2351 2378 .. 416 446 .] -0.2 7.4
Ninjurin 1/1 2368 2386 .. 138 156 .. 1.1 5.1
Shigella_OspC 1/1 2373 2391 .. 1 20 [. -0.1 5.7
Mtr2 1/1 2445 2454 .. 1 10 [. 1.2 4
UspB 1/1 2580 2593 .. 60 73 .. 1.6 8.5
HemolysinCabind 3/3 2669 2685 .. 1 18 [] 6.3 0.96
SDH_beta 1/1 2686 2702 .. 143 159 .] 4.2 0.84
BRK 1/1 2808 2828 .. 26 50 .] 3.6 3.8
DUF885 1/1 2847 2859 .. 568 580 .] 3.7 0.4
DUF2599 1/1 2872 2879 .. 1 9 [. 0.0 9
CUT 1/1 2878 2892 .. 6 20 .. 2.6 4.9
Toprim_N 1/1 2895 2930 .. 47 81 .. 2.7 3.8
PSP1 1/1 2922 2935 .. 83 96 .] 1.8 5.4
DUF1108 1/1 2951 2958 .. 79 86 .] 0.9 1.1
CIA30 1/1 2964 2975 .. 199 210 .] 3.1 1.3
Peptidase_U57 1/1 2979 2990 .. 147 158 .. 0.2 8.4
RecO 1/1 2996 3029 .. 226 259 .] 3.6 0.84
DUF1814 1/1 2998 3076 .. 238 299 .] 2.5 1.7
Glyco_hydro_26 1/1 3051 3063 .. 347 359 .] 4.1 0.53
EST1_DNA_bind 2/2 3053 3066 .. 57 71 .. 1.1 12
Alignments of top-scoring domains:
DUF1973: domain 1 of 1, from 2 to 23: score -0.0, E = 3.8
*->PsGkkyttsDFisDatsiksarLqI<-*
P+G ++ + F +D +s +s rL+I
gi|1700230 2 PNGNEMAG--FYIDNLS-LSQRLSI 23
CBM_4_9: domain 1 of 1, from 10 to 20: score 1.6, E = 5.5
*->fyvDdvsltdv<-*
fy+D+ sl++
gi|1700230 10 FYIDNLSLSQR 20
Mad3_BUB1_II: domain 1 of 1, from 16 to 38: score 2.1, E = 7.2
*->SlsRnvyKVSLGYkeqqnkvKRHtre<-*
Sls +++ VS Y +++++ K e
gi|1700230 16 SLSQRLSIVSETYDRVNKNNK---KE 38
TYW3: domain 1 of 1, from 37 to 52: score 0.6, E = 8
*->keKLkRLedrleklkk<-*
keKLk +d +e +kk
gi|1700230 37 KEKLKYSYDDIEMIKK 52
VDRIP: domain 1 of 1, from 37 to 52: score -0.6, E = 5.7
*->STkerLLeslDDlElivK<-*
ke+L s DD+E+i K
gi|1700230 37 --KEKLKYSYDDIEMIKK 52
Cas_Csm6: domain 1 of 1, from 87 to 107: score 0.1, E = 6.2
*->leieeedyNyYdrkNkEiikl<-*
l i+ + +N Y+r N+ ii
gi|1700230 87 LAIDAALFNDYERFNELIIYI 107
CaM_bdg_C0: domain 1 of 1, from 140 to 147: score 2.5, E = 5
*->DkWRgNIe<-*
D+WRg ++
gi|1700230 140 DVWRGDLL 147
CFEM: domain 1 of 1, from 196 to 205: score 2.1, E = 6.5
*->visaasslCs<-*
+is+ass+C+
gi|1700230 196 MISYASSFCA 205
Crp: domain 1 of 1, from 236 to 246: score 2.6, E = 9.1
*->lLtrLrekgLI<-*
+L L++kgLI
gi|1700230 236 VLRALQKKGLI 246
DUF1997: domain 1 of 1, from 289 to 304: score 1.4, E = 5.3
*->ltrqLleD.Fhawiae<-*
l+++Ll D +++w +e
gi|1700230 289 LQEKLLVDiYQQWLDE 304
Supt5: domain 1 of 1, from 308 to 319: score 2.4, E = 9.9
*->PdlwkVkckige<-*
P l++V+++i++
gi|1700230 308 PSLLAVRKEIIN 319
Pox_ser-thr_kin: domain 1 of 1, from 317 to 349: score 2.3, E = 1.8
*->vfsqidlnqnWsPsIkllryFknfsketldriae<-*
++ id+ + +P++ llryF ++ e ld i+e
gi|1700230 317 IINTIDIDRH-APEVELLRYFLRKIHEQLDEITE 349
HTS: domain 1 of 1, from 320 to 334: score -1.1, E = 7.1
*->PIkIPddLPAveiLe<-*
+I I+++ P+ve+L+
gi|1700230 320 TIDIDRHAPEVELLR 334
Ax_dynein_light: domain 1 of 1, from 325 to 347: score 1.3, E = 6.4
*->rHadEiafLKkqnqqlkaqLeqi<-*
rHa E++ L++ +++ +qL+ i
gi|1700230 325 RHAPEVELLRYFLRKIHEQLDEI 347
KNOX2: domain 1 of 1, from 336 to 349: score 5.3, E = 1.1
*->FLnkIEtQLqnLck<-*
FL+kI+ QL++++
gi|1700230 336 FLRKIHEQLDEITE 349
ERO1: domain 1 of 1, from 338 to 352: score 1.4, E = 2.3
CS HCCHHHHHHHHCSCCCCEEEE
*->ekIrplLqsLtktdFFRyfKV<-*
+kI+++L+++t+ fKV
gi|1700230 338 RKIHEQLDEITE------FKV 352
STAG: domain 1 of 1, from 357 to 371: score 3.0, E = 2
*->eRvdsLnskLgirke<-*
eR+ds+++kL++ +e
gi|1700230 357 ERIDSIKKKLAVGSE 371
MAM1: domain 1 of 1, from 386 to 399: score 4.0, E = 0.59
*->sRKlfdEqllkrkk<-*
+RK++ E+ll++++
gi|1700230 386 ERKIILESLLQKES 399
LNS2: domain 1 of 1, from 445 to 458: score 2.3, E = 2.3
*->VViSD...IDGTIT<-*
V+iSD++ +DGT+T
gi|1700230 445 VIISDrslVDGTLT 458
DUF975: domain 1 of 1, from 468 to 482: score 2.7, E = 1.4
*->MeqNikvdysrsElKskA<-*
M ikvd +r +lK++A
gi|1700230 468 M---IKVDANRNQLKQMA 482
VWA: domain 1 of 1, from 469 to 507: score -0.2, E = 9.6
CS EEESSSCCHHHHHHHS-SSTCHHHEEEESSCCHHHHH..HHHHHH
*->vGvGgdvdeaeLrliasepcseghvfyvedfdalwlplqdlqeql<-
+ v d+++++L+++a+ f+++++ +++ ++++++
gi|1700230 469 IKV--DANRNQLKQMATLERFLLANFTPRNTPQDL----KIIDNV 507
CS
*
gi|1700230 - -
WaaY: domain 1 of 1, from 530 to 547: score 1.6, E = 4.1
*->MItekkikglsvFvkdNd<-*
MI + k ++ F k Nd
gi|1700230 530 MIEKVKLSEFDYFLKSND 547
Queuosine_synth: domain 1 of 1, from 534 to 543: score 0.3, E = 8
*->MklsdFDYeL<-*
kls+FDY L
gi|1700230 534 VKLSEFDYFL 543
TMP-TENI: domain 1 of 1, from 559 to 572: score 1.6, E = 4.3
*->LYlvTdsqldedll<-*
LYl++d+++++d +
gi|1700230 559 LYLISDPEDNRDVI 572
Gtr1_RagA: domain 1 of 1, from 561 to 589: score 4.2, E = 0.66
*->vreDgneksgli.....lyNiknarkaie<-*
+++D+++ ++i +++++yN k+ + +ie
gi|1700230 561 LISDPEDNRDVIikpndDYNLKSIKDFIE 589
Peptidase_S55: domain 1 of 1, from 610 to 629: score 0.8, E = 7.9
*->NKEFlvknisnkaipValrn<-*
NKE ++++ + +++ Va+r+
gi|1700230 610 NKECIFAHDEGETYQVAYRD 629
UbiD: domain 1 of 1, from 669 to 681: score 0.2, E = 4.5
*->idlLedeGeLirI<-*
+ lL+++++L++I
gi|1700230 669 LSLLKKHDRLVSI 681
zf-DBF: domain 1 of 1, from 691 to 705: score 5.6, E = 1
*->dnykalDdLiaqlaf<-*
+n+ ++D+L+ ++++
gi|1700230 691 ENFLDIDSLLKNSTH 705
DED: domain 1 of 1, from 712 to 725: score 1.5, E = 9.4
CS HHHHHHHHHCTSCH
*->yrvlLleisenLds<-*
yr+lL +is+++ +
gi|1700230 712 YRKLLNSISNDINK 725
DUF1970: domain 1 of 1, from 714 to 732: score 3.0, E = 0.49
*->KLtdsitsqLnnYAesLnD<-*
KL +si+ +n Y esLn+
gi|1700230 714 KLLNSISNDINKYMESLNE 732
essB: domain 1 of 1, from 714 to 730: score 0.7, E = 7
*->ekLdelekeldeYeker<-*
++L+++ ++++Y++++
gi|1700230 714 KLLNSISNDINKYMESL 730
VHS: domain 1 of 1, from 714 to 744: score 2.0, E = 5.3
CS HHHHHHHHH-.......TT-HHHHHHHHHHHHTT
*->eliqeWadafCKhdknkpdlkyisdvyklLKrkG<-*
+l+ + ++++ +k+ ++l+ i+d+y+lL+++
gi|1700230 714 KLLNSISNDI---NKYMESLNEIKDSYHLLPFDV 744
DUF1002: domain 1 of 1, from 716 to 734: score 1.0, E = 7.6
*->lnilnnDygafkkqLnslk<-*
ln ++nD++++ ++Ln +k
gi|1700230 716 LNSISNDINKYMESLNEIK 734
DUF1322: domain 1 of 1, from 716 to 737: score 1.2, E = 9.1
*->MsKRnRDiDKAiAsLaEiakkY<-*
++ Di K + sL+Ei+ Y
gi|1700230 716 LNSISNDINKYMESLNEIKDSY 737
Phage_Gp15: domain 1 of 1, from 725 to 739: score 1.9, E = 1
*->kYldsmrklqakYsL<-*
kY +s+ + ++ Y L
gi|1700230 725 KYMESLNEIKDSYHL 739
UBA_2: domain 1 of 1, from 729 to 740: score 2.9, E = 2.8
*->slNEIkDAYlLv<-*
slNEIkD Y L+
gi|1700230 729 SLNEIKDSYHLL 740
PP2C: domain 1 of 1, from 816 to 824: score 0.7, E = 6.5
CS HHTT--S-E
*->iargseDni<-*
ia+g++Dni
gi|1700230 816 IAYGAQDNI 824
RasGAP_C: domain 1 of 1, from 936 to 947: score 1.7, E = 5.5
CS SSEEEESSS-TG
*->GVlleitgpqln<-*
GVl++i+++q+
gi|1700230 936 GVLKNIDDYQVL 947
MACPF: domain 1 of 1, from 966 to 984: score -0.5, E = 9.6
*->LlkevpcagkrenlkrAlleeY<-*
Llk+v + k +++++ + e+Y
gi|1700230 966 LLKDVRN--KIKSVDQLI-EYY 984
ATP-synt: domain 1 of 1, from 967 to 977: score 2.6, E = 0.66
CS --HHHHHHHHHHH
*->AsLKeIrdRIkSV<-*
LK++r++IkSV
gi|1700230 967 --LKDVRNKIKSV 977
SH2: domain 1 of 1, from 976 to 984: score 2.0, E = 4.1
CS SHHHHHHHH
*->sLpeLvehY<-*
s+ +L+e+Y
gi|1700230 976 SVDQLIEYY 984
Mqo: domain 1 of 1, from 1031 to 1046: score -0.6, E = 8.5
*->RnsDGtWtVtvkdlnng<-*
RnsD+ W+++v+++ +g
gi|1700230 1031 RNSDN-WQLVVANNATG 1046
SPC25: domain 1 of 1, from 1060 to 1076: score 0.3, E = 8.9
*->dkpVKviNkwDgpavKna<-*
VKv N wD pa+ n+
gi|1700230 1060 PDIVKV-NEWDLPAIANI 1076
T-box: domain 1 of 1, from 1143 to 1152: score 1.1, E = 3.4
*->QNeeITkLKI<-*
+Ne +TkLKI
gi|1700230 1143 HNELVTKLKI 1152
Formyl_trans_C: domain 1 of 1, from 1151 to 1161: score 2.0, E = 5.8
*->kitkedgrIDW<-*
ki +e g+I W
gi|1700230 1151 KIQPENGKIRW 1161
Phage_sheath_1: domain 1 of 1, from 1185 to 1200: score -0.9, E = 6.1
*->EyitFrfviTstylvd<-*
E +t r+ ++s+yl++
gi|1700230 1185 EQLTARLNQFSDYLQT 1200
Phage_integr_N: domain 1 of 1, from 1191 to 1201: score 1.6, E = 8.6
CS HHHHHHHHHHT
*->leqFleyLsle<-*
l+qF++yL+ e
gi|1700230 1191 LNQFSDYLQTE 1201
Sas10_Utp3_C: domain 1 of 1, from 1239 to 1250: score 3.5, E = 3.9
*->GIkknvvKSvKl<-*
GI++nv+ S+K
gi|1700230 1239 GIRTNVSASTKA 1250
aPHC: domain 1 of 1, from 1286 to 1293: score -0.6, E = 9.4
*->pgrwgeqt<-*
++rwge+t
gi|1700230 1286 WNRWGEIT 1293
DUF2213: domain 1 of 1, from 1294 to 1304: score 1.4, E = 5.5
*->stRsitadGfL<-*
++R+++++G+L
gi|1700230 1294 TERKKDINGRL 1304
ATG11: domain 1 of 1, from 1310 to 1331: score 0.8, E = 6.7
*->fedaVikrfkDvetLakkLqKe<-*
+ d+ i+r +v++L+kk+q++
gi|1700230 1310 LLDNLITRQLSVNQLNKKQQRK 1331
DUF1113: domain 1 of 1, from 1317 to 1343: score 1.5, E = 4.7
*->kelllfllnfnqrRllknsFpklkyslk<-*
++l+ ++ln+ q+R l+++Fp l k
gi|1700230 1317 RQLSVNQLNKKQQRKLAEIFPQLT-DNK 1343
MecA_N: domain 1 of 1, from 1335 to 1343: score 1.8, E = 6.5
*->IhPgLkkgd<-*
I+P+L++++
gi|1700230 1335 IFPQLTDNK 1343
Cytochrom_C552: domain 1 of 1, from 1346 to 1367: score -1.5, E = 8.9
CS HHHHHHCHHHHHHHHHHHTTSS
*->KeeFlkTvvpqWekqArkkGll<-*
K eFl T+ W qA k ll
gi|1700230 1346 KGEFLLTLHDSWRMQALKYDLL 1367
PP2A_B_N: domain 1 of 1, from 1382 to 1401: score 1.0, E = 7.1
*->LWKvsekk.lkkvesnfnlnr<-*
LW+v+++ ++ ++ +++ l++
gi|1700230 1382 LWRVTDRWrITEA-DGNTLQD 1401
Cas_Cas2CT1978: domain 1 of 1, from 1386 to 1399: score 1.7, E = 6.3
*->dnrrepVDfDGllL<-*
++r+++ ++DG +L
gi|1700230 1386 TDRWRITEADGNTL 1399
GnsAB: domain 1 of 1, from 1472 to 1486: score 1.9, E = 7.4
*->MniEelkkkaEeeIa<-*
M+ +l++k EeeI+
gi|1700230 1472 MSNGDLTEKQEEEIQ 1486
eIF-4B: domain 1 of 1, from 1489 to 1498: score -1.7, E = 1.9
*->MsKpWGGiGiGA<-*
++ +WGGi GA
gi|1700230 1489 LAMAWGGI--GA 1498
DUF867: domain 1 of 1, from 1587 to 1601: score 2.2, E = 3.1
*->YssFeELkenetegk<-*
Y+ F+ L+ ++++++
gi|1700230 1587 YHAFSQLATETDPHV 1601
GntP_permease: domain 1 of 1, from 1609 to 1629: score 0.3, E = 5.8
*->TvleTIlSvvGLifvLiLlsLv<-*
+v +TI++++GL++ + + +++
gi|1700230 1609 GVFSTINATIGLGVAF-AMAMG 1629
PC_rep: domain 1 of 1, from 1615 to 1625: score 3.6, E = 3.7
*->gAilaLGliha<-*
+A+++LG+++a
gi|1700230 1615 NATIGLGVAFA 1625
DUF2328: domain 1 of 1, from 1623 to 1645: score 0.4, E = 5.4
*->lLAreaGgtisveiteeavvlsa<-*
+ A ++Ggt + +++++++ l++
gi|1700230 1623 AFAMAMGGTAATAAGPAGIALAF 1645
PepSY_TM: domain 1 of 1, from 1628 to 1651: score 5.8, E = 2
*->lgdlHrgrfggvallglllglllllllltGlvlw<-*
+g+ ++ ++g+++++l++t+++++
gi|1700230 1628 MGG----------TAATAAGPAGIALAFTMIIVG 1651
UPF0147: domain 1 of 1, from 1652 to 1664: score 3.7, E = 4.2
*->dIWeiiSeLErik<-*
dI++ +S+ Eri+
gi|1700230 1652 DIYSAVSQIERIR 1664
Orthopox_F7: domain 1 of 1, from 1692 to 1707: score 3.0, E = 1.4
*->LDiKRRYRHaiEsvYF<-*
LD + RY ++EsvY
gi|1700230 1692 LDNQIRYNQTMESVYQ 1707
Cw-hydrolase: domain 1 of 1, from 1702 to 1740: score 4.0, E = 1.2
*->mlsalilselsypAllLaeqqvhqrfvhpgPLvLkaapl<-*
m s+ + + y+All +q v+ f g vLka p+
gi|1700230 1702 MESVYQRQRDYYEALLASKQGVDTLFYSRGEAVLKAIPF 1740
Nitr_red_assoc: domain 1 of 1, from 1811 to 1821: score 0.8, E = 4
*->NhNFlpAlqEF<-*
N+N+ A++E+
gi|1700230 1811 NKNLHQAFAEL 1821
PKI: domain 1 of 1, from 1821 to 1834: score 1.4, E = 6.8
*->tDVEStyadFisSg<-*
D+ Sty+ Fi S+
gi|1700230 1821 LDIDSTYSPFILSA 1834
FG-GAP: domain 1 of 4, from 1826 to 1851: score 8.8, E = 0.14
CS CCSCEEEC -TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvyll<-*
++s+ + D++++G++D++v +++ +
gi|1700230 1826 TYSPFILSaDVDRNGLNDFIV-------INeK-----Y 1851
DUF1974: domain 1 of 1, from 1903 to 1910: score 1.3, E = 1.5
*->dvIqVDDF<-*
++I VD+F
gi|1700230 1903 HAIEVDEF 1910
FG-GAP: domain 2 of 4, from 1912 to 1942: score 9.4, E = 0.096
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+ +++gD+nGD +lv+ +++d+ ++y++
gi|1700230 1912 EVVFPVLGDFNGDNVFELVI-------FHdDkMTTYHY 1942
TmoB: domain 1 of 1, from 1914 to 1930: score 0.8, E = 9.1
CS --EEEEEEEETT-SBEEEE
*->MAlFPiisnFegDFVlQLV<-*
FP+ + F gD V LV
gi|1700230 1914 --VFPVLGDFNGDNVFELV 1930
Gp49: domain 1 of 1, from 1923 to 1935: score 2.7, E = 6.9
*->GeGvfELRidygp<-*
G+ vfEL i +++
gi|1700230 1923 GDNVFELVIFHDD 1935
IMS: domain 1 of 1, from 1959 to 1994: score 0.5, E = 5.1
CS HHHHHHHHHHHHHHHHHTSSSCCEEEEE EEEEEEEE
*->dtrdlteaalrllllliwrggrrvRllG.VslsdLid<-*
+ +d++e +++ l+ + +++++++l+G++++ ++ d
gi|1700230 1959 NIGDFIEPVRQ-LFEGEKSKNYPYSLVGdINNDGFDD 1994
FG-GAP: domain 3 of 4, from 1982 to 2007: score 12.6, E = 0.011
CS EEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->vaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+++gD+n+DG++D+++ +++g +l
gi|1700230 1982 SLVGDINNDGFDDILL-------LNkSGDMLHL 2007
FG-GAP: domain 4 of 4, from 2036 to 2066: score 8.7, E = 0.15
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+ s++ ++Dln DG Dlv+ + +d+g ++l
gi|1700230 2036 HRSQLQLTDLNKDGGLDLVI-------ILnDgGYYQAL 2066
DUF2072: domain 1 of 1, from 2071 to 2085: score 4.7, E = 0.29
*->EGtYviDLpSalkkk<-*
+G+Y+ D pS+++k
gi|1700230 2071 DGKYHFDTPSMVNKI 2085
SIS: domain 1 of 1, from 2160 to 2173: score 1.6, E = 9.6
CS HHHHSEEEEEE-CH
*->klakakrIyliGaG<-*
++k+k+I++iG+G
gi|1700230 2160 GYHKKKNIFTIGSG 2173
HemolysinCabind: domain 1 of 3, from 2198 to 2208: score 7.6, E = 0.4
CS EEEEESSCGEE
*->tLyGgaGnDtl<-*
+L+Gg+GnDt
gi|1700230 2198 ILSGGEGNDTV 2208
DUF1767: domain 1 of 1, from 2218 to 2233: score 3.8, E = 1.6
*->vnsirDIsqPlynqlLs<-*
++si+DIs +y+q+ +
gi|1700230 2218 IDSIIDISKGYYSQV-N 2233
EST1_DNA_bind: domain 1 of 2, from 2245 to 2261: score 1.0, E = 13
*->DYdkifssedipDrLvG<-*
D++ i++ e++ D ++G
gi|1700230 2245 DFENILGHENVNDTIIG 2261
DUF2002: domain 1 of 1, from 2266 to 2278: score 1.9, E = 3.1
*->ryLnrlFGDEKtd<-*
+yLn++ GD+K
gi|1700230 2266 NYLNGMGGDDKIW 2278
HemolysinCabind: domain 2 of 3, from 2269 to 2286: score 14.9, E = 0.0023
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +G+D + G++GnD+l
gi|1700230 2269 NGMGGDDKIWGNGGNDLL 2286
U3_assoc_6: domain 1 of 1, from 2302 to 2317: score 1.7, E = 8.8
*->kkfknsisdysiqrrI<-*
+++ +s+++ s+q rI
gi|1700230 2302 YHILKSTHEKSLQIRI 2317
Lipoprotein_17: domain 1 of 1, from 2334 to 2349: score 2.5, E = 6.4
*->eLeeeinkIssielke<-*
Le ++n+I+siel +
gi|1700230 2334 FLEHKLNQIKSIELDN 2349
DUF1248: domain 1 of 1, from 2347 to 2357: score 3.0, E = 1.1
*->rddVDvviNPd<-*
+d++Dv+iN++
gi|1700230 2347 LDNIDVLININ 2357
OstA_C: domain 1 of 1, from 2351 to 2378: score -0.2, E = 7.4
*->ddpdyntatnsgqdkisqiglsaqwplarnW<-*
d +++++++n++ + qi+l++ +++++n
gi|1700230 2351 DVLININNDNGF---MTQIRLVGVYNINNNQ 2378
Ninjurin: domain 1 of 1, from 2368 to 2386: score 1.1, E = 5.1
*->figrLnlnrvedqrrlnrl<-*
+ g +n+n++++q ln++
gi|1700230 2368 LVGVYNINNNQKQQVLNFT 2386
Shigella_OspC: domain 1 of 1, from 2373 to 2391: score -0.1, E = 5.7
*->vEisnHqkklPLnkkHHtvD<-*
i n qk+ Ln + tvD
gi|1700230 2373 -NINNNQKQQVLNFTIQTVD 2391
Mtr2: domain 1 of 1, from 2445 to 2454: score 1.2, E = 4
CS EECCTT....
*->ngqtQqQVTH<-*
ng +QqQVTH
gi|1700230 2445 NGYQQQQVTH 2454
UspB: domain 1 of 1, from 2580 to 2593: score 1.6, E = 8.5
*->vRLfhYIksqeYlh<-*
+RL++Y + ++Y h
gi|1700230 2580 IRLVNYMNDERYRH 2593
HemolysinCabind: domain 3 of 3, from 2669 to 2685: score 6.3, E = 0.96
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +G L Gg+G+Dt+
gi|1700230 2669 RGHEGT-MLKGGGGDDTY 2685
SDH_beta: domain 1 of 1, from 2686 to 2702: score 4.2, E = 0.84
*->YySiGGGfIvdeehfGl<-*
YyS G G+I + +++Gl
gi|1700230 2686 YYSAGSGAINIADTSGL 2702
BRK: domain 1 of 1, from 2808 to 2828: score 3.6, E = 3.8
*->klkdLerWLqenPgYevdlafiPrs<-*
+l+++++W+ nP Y+v+ + +
gi|1700230 2808 QLRTIKAWVTKNPIYDVA----DLD 2828
DUF885: domain 1 of 1, from 2847 to 2859: score 3.7, E = 0.4
*->PLdvLEqkvdrwI<-*
PL++ Eqk+d+++
gi|1700230 2847 PLPLIEQKIDAFF 2859
DUF2599: domain 1 of 1, from 2872 to 2879: score 0.0, E = 9
*->IdhatWaqw<-*
+h+tW+q+
gi|1700230 2872 -EHVTWIQR 2879
CUT: domain 1 of 1, from 2878 to 2892: score 2.6, E = 4.9
CS XXX---SHHHHHHHH
*->mneeldTaeIarrVk<-*
+ ee dT++Ia++Vk
gi|1700230 2878 QREEFDTVDIAKWVK 2892
Toprim_N: domain 1 of 1, from 2895 to 2930: score 2.7, E = 3.8
CS HHHHHT-HHHHHTTT-EE-SST..T--EET TTTEE
*->fLkkkgfdeelLleaGLlsknenggkfyDr.FrnRi<-*
+L++++ + lL+++GLl+++ +k D++F+nRi
gi|1700230 2895 HLRSQNEINYLLEQLGLLKESPLSDKALDFtFKNRI 2930
PSP1: domain 1 of 1, from 2922 to 2935: score 1.8, E = 5.4
*->LakvfktRIELRQI<-*
L ++fk RI L+Q
gi|1700230 2922 LDFTFKNRIDLAQA 2935
DUF1108: domain 1 of 1, from 2951 to 2958: score 0.9, E = 1.1
*->LINLVMkW<-*
LINL Mk
gi|1700230 2951 LINLAMKY 2958
CIA30: domain 1 of 1, from 2964 to 2975: score 3.1, E = 1.3
*->GpFeLeidsIka<-*
G+FeL+i I++
gi|1700230 2964 GHFELLISNIQV 2975
Peptidase_U57: domain 1 of 1, from 2979 to 2990: score 0.2, E = 8.4
*->vGvhvsEkEqPE<-*
+Gv+vsE EqP+
gi|1700230 2979 YGVVVSESEQPL 2990
RecO: domain 1 of 1, from 2996 to 3029: score 3.6, E = 0.84
*->akLkplldskleesslvERlyelsrsflprrelL<-*
+ L +++ +k +++ v Rl e + sf++ +lL
gi|1700230 2996 IDLRQYFNQKNLTKDHVGRLAEHDMSFDELTLLL 3029
DUF1814: domain 1 of 1, from 2998 to 3076: score 2.5, E = 1.7
*->ikrtflerllalhkflfysrkdedfdgil.aeaa.gllllapwlefl
++ f +++l++++ +++++d fd+ + ++ + ++a+++++
gi|1700230 2998 LRQYFNQKNLTKDHVGRLAEHDMSFDELTlLLDKnIPIEQAFTQRLQ 3044
kei.la..............ltedyeeflesl<-*
++++++ ++++ ++++ + +d++ ++e +
gi|1700230 3045 TQLgPLklfndervfnkgdvFDQDISQLAEAM 3076
Glyco_hydro_26: domain 1 of 1, from 3051 to 3063: score 4.1, E = 0.53
CS H..........ST
*->alynsswVlnkDE<-*
+l+n+++V nk+
gi|1700230 3051 KLFNDERVFNKGD 3063
EST1_DNA_bind: domain 2 of 2, from 3053 to 3066: score 1.1, E = 12
*->FNDYdkifssedipD<-*
FND + +f+++d+ D
gi|1700230 3053 FND-ERVFNKGDVFD 3066
//