hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            170680626.fa
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Query sequence: gi|170680626|ref|YP_001742364.1|
Accession:      [none]
Description:    hypothetical protein EcSMS35_0257 [Escherichia coli SMS-3-5]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
hemP            Hemin uptake protein hemP                 2.9        1.7   1
fn3             Fibronectin type III domain               3.0        4.1   1
Tmemb_18A       Transmembrane protein 188                 1.0        5.5   1
DHQ_synthase    3-dehydroquinate synthase                -0.2        9.8   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
DHQ_synthase      1/1       1     8 [.   332   339 .]    -0.2      9.8
fn3               1/1     125   148 ..     1    22 [.     3.0      4.1
Tmemb_18A         1/1     246   265 ..   112   131 .]     1.0      5.5
hemP              1/1     251   258 ..    31    38 .]     2.9      1.7

Alignments of top-scoring domains:
DHQ_synthase: domain 1 of 1, from 1 to 8: score -0.2, E = 9.8
                CS    HTT-TT-B
                   *->mtrDKKvr<-*
                      mt+DKKv
  gi|1706806     1    MTYDKKVT    8

fn3: domain 1 of 1, from 125 to 148: score 3.0, E = 4.1
                CS    ----CEEEEEEE  CTTEEEEEEE
                   *->PsaPtnltvtdv..tstsltlsWs<-*
                      Ps P+ ++ +d+ ++++s+ ++Ws
  gi|1706806   125    PSVPKYPQQMDIigGWDSIDFNWS    148

Tmemb_18A: domain 1 of 1, from 246 to 265: score 1.0, E = 5.5
                   *->lSCDetGKLIlkPrvrnnas<-*
                      + C ++GKLIl   ++  +
  gi|1706806   246    MQCYNNGKLILTCDQSSFND    265

hemP: domain 1 of 1, from 251 to 258: score 2.9, E = 1.7
                   *->aGKLILTK<-*
                      +GKLILT
  gi|1706806   251    NGKLILTC    258

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