hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 171318186.fa
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Query sequence: gi|171318186|ref|ZP_02907351.1|
Accession: [none]
Description: Peptidoglycan-binding LysM [Burkholderia ambifaria MEX-5]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
LysM LysM domain 23.4 8.5e-06 1
DUF2390 Protein of unknown function (DUF2390) 8.1 0.052 1
DUF1154 Protein of unknown function (DUF1154) 7.7 0.057 1
SSV1_ORF_D-335 ORF D-335-like protein 7.3 0.1 2
Peptidase_M16_C Peptidase M16 inactive domain 7.8 0.1 2
DUF1970 Domain of unknown function (DUF1970) 4.8 0.11 1
PNPase Polyribonucleotide nucleotidyltransfe 4.2 0.21 1
DUF1974 Domain of unknown function (DUF1974) 3.9 0.22 1
DUF1013 Protein of unknown function (DUF1013) 4.3 0.25 1
LR8 LR8 protein 5.3 0.52 1
Pro-kuma_activ Pro-kumamolisin, activation domain 5.7 0.58 1
DUF2125 Uncharacterized protein conserved in 1.9 0.7 1
NDUF_B8 NADH-ubiquinone oxidoreductase ASHI s 2.9 0.82 1
Catalase-rel Catalase-related immune-responsive 4.8 0.97 1
PSCyt1 Planctomycete cytochrome C 3.7 1.4 1
Beta_elim_lyase Beta-eliminating lyase 2.1 1.5 1
Apidaecin Apidaecin 3.5 1.5 1
GRASP55_65 GRASP55/65 family 2.9 1.5 1
Phage_tail_T Minor tail protein T 2.5 1.5 1
DUF1175 Protein of unknown function (DUF1175) 2.2 1.7 1
CPT Chloramphenicol phosphotransferase-li 2.7 1.7 1
Glyco_hydro_70 Glycosyl hydrolase family 70 1.0 1.8 1
XPC-binding XPC-binding domain 4.7 1.8 1
Peptidase_M15 D-ala-D-ala dipeptidase 2.8 1.8 1
GumN GumN protein 2.8 2 1
Type_III_YscX Type III secretion system YscX (type_ 2.7 2.1 1
Chlam_PMP Chlamydia polymorphic membrane protei 6.2 2.2 1
MCC-bdg_PDZ PDZ domain of MCC-2 bdg protein for U 4.2 2.3 1
HyaE Hydrogenase-1 expression protein HyaE 2.3 2.4 1
DUF1094 Protein of unknown function (DUF1094) 3.4 2.4 1
ABM Antibiotic biosynthesis monooxygenase 4.4 2.6 1
DUF494 Protein of unknown function (DUF494) 2.2 2.7 1
EST1_DNA_bind Est1 DNA/RNA binding domain 3.1 2.8 1
DUF1112 Protein of unknown function (DUF1112) 1.9 2.9 1
Opi1 Transcription factor Opi1 1.4 3 1
DUF438 Family of unknown function (DUF438) 2.4 3.2 1
BAR_3_WASP_bdg WASP-binding domain of Sorting nexin 2.7 3.3 1
MTP18 Mitochondrial 18 KDa protein (MTP18) 2.3 3.4 1
Leader_Thr Threonine leader peptide 4.4 3.5 1
Oxidored_nitro Nitrogenase component 1 type Oxidored -0.0 3.5 1
Hydrolase haloacid dehalogenase-like hydrolase 2.1 3.5 1
DUF2351 Uncharacterized conserved protein (DU 1.0 3.6 1
DUF2550 Protein of unknown function (DUF2550) 2.8 3.8 1
Ribonuc_2-5A Ribonuclease 2-5A 2.2 3.9 1
Plasmid_RAQPRD Plasmid protein of unknown function ( 1.8 4 2
Methyltransf_11 Methyltransferase domain 3.2 4 2
Mu-transpos_C Mu transposase, C-terminal 3.2 4.3 1
p25-alpha p25-alpha 2.1 4.3 1
Pox_A11 Poxvirus A11 Protein -0.9 4.5 1
Glyco_hydro_79n Glycosyl hydrolase family 79, N-termi -0.1 4.6 1
Drf_FH3 Diaphanous FH3 Domain 0.8 4.6 1
EspF EspF protein repeat 1.4 4.9 1
DUF2164 Uncharacterized conserved protein (DU 3.0 4.9 1
DUF2190 Uncharacterized conserved protein (DU 2.1 5 1
Toxin_13 Neurotoxin B-IV-like protein 1.9 5.1 1
Cbl_N2 CBL proto-oncogene N-terminus, EF han 2.6 5.1 1
MutS_IV MutS family domain IV 2.8 5.1 1
Coat_X Spore Coat Protein X and V domain 3.1 5.2 1
FTHFS Formate--tetrahydrofolate ligase -0.4 5.3 1
GerE Bacterial regulatory proteins, luxR f 3.0 5.8 1
YjeF_N YjeF-related protein N-terminus 1.0 5.8 1
Transposase_Tc5 Tc5 transposase 0.5 5.8 1
SRR1 SRR1 3.5 5.9 1
PhyH Phytanoyl-CoA dioxygenase (PhyH) 0.4 5.9 1
Cytochrom_B558a Cytochrome Cytochrome b558 alpha-subu -0.6 6.1 1
DUF952 Protein of unknown function (DUF952) 2.5 6.2 1
DUF526 Protein of unknown function (DUF526) 2.1 6.2 1
Ribosomal_S3_N Ribosomal protein S3, N-terminal doma 1.8 6.2 1
HrpB2 Bacterial type III secretion protein -0.3 6.3 1
Dynactin_p62 Dynactin p62 family -0.2 6.5 1
HisG ATP phosphoribosyltransferase 1.5 6.8 1
ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valin 0.6 6.8 1
DUF702 Domain of unknown function (DUF702) 0.5 6.8 1
Morbilli_P Morbillivirus RNA polymerase alpha su 0.1 6.9 1
Pas_Saposin Pas factor saposin fold 2.0 7 1
SUR7 SUR7 protein 1.0 7 1
DUF2296 Predicted integral membrane metal-bin 2.2 7.2 1
PRCH Photosynthetic reaction centre, H-cha 0.8 7.2 1
DUF2478 Protein of unknown function (DUF2478) 1.3 7.3 1
Cas_Cmr5 CRISPR-associated protein (Cas_Cmr5) 0.9 7.3 1
Glyco_hydro_42M Beta-galactosidase trimerisation doma 0.5 7.3 1
Chal_sti_synt_N Chalcone and stilbene synthases, N-te -0.5 7.5 1
DUF2036 Uncharacterized conserved protein (DU 0.6 7.6 1
Nha1_C Alkali metal cation/H+ antiporter Nha 1.0 7.7 1
Herpes_IE2_3 Herpes virus intermediate/early prote 0.9 7.8 1
BicD Microtubule-associated protein Bicaud -1.8 7.9 1
Not1 CCR4-Not complex component, Not1 -0.0 7.9 1
Flagellin_N Bacterial flagellin N-terminus 1.6 8 1
DUF632 Protein of unknown function (DUF632) 0.1 8 1
RAG2 Recombination activating protein 2 -1.7 8.2 1
LEA_3 Late embryogenesis abundant protein 0.9 8.3 1
OpcA Outer membrane protein OpcA -0.7 8.4 1
SelB-wing_3 Elongation factor SelB, winged helix 2.1 8.4 2
RHD3 Root hair defective 3 GTP-binding pro -1.9 8.4 1
gpW gpW 1.6 9.2 1
Cytomega_TRL10 Cytomegalovirus TRL10 protein 0.3 9.2 1
RALF Rapid ALkalinization Factor (RALF) 1.2 9.2 1
Phage_attach Phage Head-Tail Attachment -1.1 9.3 1
Beta-lactamase Beta-lactamase 0.2 9.5 1
DUF1349 Protein of unknown function (DUF1349) 0.2 9.6 1
DUF1035 Protein of unknown function (DUF1035) 1.1 9.7 1
DUF1493 Protein of unknown function (DUF1493) 0.1 9.8 1
HTH_psq helix-turn-helix, Psq domain 2.4 9.9 1
tRNA-synt_2c tRNA synthetases class II (A) -0.8 9.9 1
DUF2029 Protein of unknown function (DUF2029) 0.6 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HrpB2 1/1 27 44 .. 1 19 [. -0.3 6.3
Plasmid_RAQPRD 1/2 31 47 .. 1 17 [. 1.2 6.5
Peptidase_M16_C 1/2 46 84 .. 158 198 .] 1.3 7
DUF1974 1/1 61 77 .. 114 130 .. 3.9 0.22
Phage_attach 1/1 61 76 .. 1 16 [. -1.1 9.3
DUF702 1/1 67 75 .. 161 169 .] 0.5 6.8
DUF1013 1/1 73 88 .. 127 143 .] 4.3 0.25
MCC-bdg_PDZ 1/1 79 93 .. 55 69 .] 4.2 2.3
Toxin_13 1/1 84 100 .. 1 17 [. 1.9 5.1
BicD 1/1 92 105 .. 1 14 [. -1.8 7.9
Plasmid_RAQPRD 2/2 140 150 .. 1 11 [. 0.6 9.8
Morbilli_P 1/1 141 157 .. 267 283 .. 0.1 6.9
Catalase-rel 1/1 183 198 .. 70 85 .] 4.8 0.97
Coat_X 1/1 249 260 .. 1 12 [. 3.1 5.2
BAR_3_WASP_bdg 1/1 253 265 .. 225 237 .] 2.7 3.3
Pox_A11 1/1 379 384 .. 1 6 [. -0.9 4.5
DUF1154 1/1 414 423 .. 38 47 .] 7.7 0.057
Phage_tail_T 1/1 449 455 .. 97 103 .] 2.5 1.5
DUF1493 1/1 524 531 .. 112 119 .] 0.1 9.8
Type_III_YscX 1/1 628 656 .. 80 114 .. 2.7 2.1
DUF1112 1/1 647 655 .. 230 238 .] 1.9 2.9
RHD3 1/1 655 684 .. 783 812 .] -1.9 8.4
DUF2036 1/1 688 697 .. 1 10 [. 0.6 7.6
OpcA 1/1 716 736 .. 95 116 .. -0.7 8.4
DUF2478 1/1 740 759 .. 1 19 [. 1.3 7.3
DUF1035 1/1 798 813 .. 41 57 .. 1.1 9.7
Glyco_hydro_70 1/1 860 884 .. 825 850 .] 1.0 1.8
SUR7 1/1 919 941 .. 188 210 .] 1.0 7
DUF2190 1/1 925 943 .. 87 107 .. 2.1 5
Cbl_N2 1/1 1069 1078 .. 77 86 .] 2.6 5.1
YjeF_N 1/1 1096 1106 .. 1 11 [. 1.0 5.8
ELFV_dehydrog 1/1 1128 1136 .. 270 278 .] 0.6 6.8
DUF1349 1/1 1172 1185 .. 168 181 .. 0.2 9.6
Chal_sti_synt_N 1/1 1219 1237 .. 209 227 .] -0.5 7.5
RALF 1/1 1245 1266 .. 1 22 [. 1.2 9.2
DUF2164 1/1 1266 1280 .. 62 81 .] 3.0 4.9
SSV1_ORF_D-335 1/2 1272 1285 .. 17 31 .. 6.5 0.17
Methyltransf_11 1/2 1521 1544 .. 1 28 [. 1.3 13
NDUF_B8 1/1 1603 1623 .. 1 21 [. 2.9 0.82
gpW 1/1 1637 1644 .. 61 68 .] 1.6 9.2
LR8 1/1 1638 1648 .. 220 230 .] 5.3 0.52
XPC-binding 1/1 1696 1713 .. 35 59 .] 4.7 1.8
DUF2351 1/1 1706 1729 .. 143 168 .. 1.0 3.6
RAG2 1/1 1809 1826 .. 519 536 .] -1.7 8.2
Pas_Saposin 1/1 1821 1830 .. 67 76 .] 2.0 7
EspF 1/1 1893 1907 .. 33 47 .] 1.4 4.9
SSV1_ORF_D-335 2/2 1951 1974 .. 51 73 .] 0.7 10
DUF952 1/1 2002 2010 .. 1 9 [. 2.5 6.2
Ribosomal_S3_N 1/1 2029 2045 .. 50 71 .] 1.8 6.2
PSCyt1 1/1 2083 2091 .. 54 62 .] 3.7 1.4
Pro-kuma_activ 1/1 2125 2140 .. 46 61 .. 5.7 0.58
CPT 1/1 2129 2142 .. 209 222 .] 2.7 1.7
PRCH 1/1 2155 2165 .. 135 145 .] 0.8 7.2
tRNA-synt_2c 1/1 2213 2224 .. 598 609 .] -0.8 9.9
Apidaecin 1/1 2242 2275 .. 1 28 [] 3.5 1.5
Beta-lactamase 1/1 2303 2331 .. 1 35 [. 0.2 9.5
Methyltransf_11 2/2 2307 2327 .. 76 97 .. 1.9 9.2
DUF1094 1/1 2338 2354 .. 81 97 .] 3.4 2.4
Peptidase_M15 1/1 2415 2438 .. 31 54 .. 2.8 1.8
Dynactin_p62 1/1 2441 2455 .. 496 510 .] -0.2 6.5
DUF1175 1/1 2592 2620 .. 1 31 [. 2.2 1.7
Glyco_hydro_79n 1/1 2623 2628 .. 351 356 .] -0.1 4.6
PNPase 1/1 2633 2639 .. 78 84 .] 4.2 0.21
Cas_Cmr5 1/1 2694 2721 .. 1 29 [. 0.9 7.3
HTH_psq 1/1 2835 2850 .. 32 48 .] 2.4 9.9
DUF2125 1/1 2844 2853 .. 356 365 .] 1.9 0.7
Not1 1/1 2894 2918 .. 391 415 .] -0.0 7.9
SRR1 1/1 2922 2938 .. 40 56 .] 3.5 5.9
DUF632 1/1 2929 2947 .. 329 347 .] 0.1 8
Chlam_PMP 1/1 2936 2959 .. 1 19 [] 6.2 2.2
Ribonuc_2-5A 1/1 2939 2953 .. 64 78 .. 2.2 3.9
Mu-transpos_C 1/1 2963 2975 .. 65 81 .] 3.2 4.3
DUF526 1/1 3043 3049 .. 64 70 .] 2.1 6.2
ABM 1/1 3054 3073 .. 44 65 .] 4.4 2.6
DUF2390 1/1 3057 3094 .. 38 75 .. 8.1 0.052
HyaE 1/1 3074 3085 .. 1 14 [. 2.3 2.4
MutS_IV 1/1 3081 3096 .. 1 16 [. 2.8 5.1
PhyH 1/1 3118 3148 .. 1 32 [. 0.4 5.9
SelB-wing_3 1/2 3196 3212 .. 1 17 [. 0.7 23
Herpes_IE2_3 1/1 3207 3229 .. 22 50 .. 0.9 7.8
LEA_3 1/1 3231 3236 .. 1 6 [. 0.9 8.3
FTHFS 1/1 3236 3246 .. 547 557 .. -0.4 5.3
Hydrolase 1/1 3237 3301 .. 95 169 .. 2.1 3.5
Oxidored_nitro 1/1 3268 3323 .. 358 399 .. -0.0 3.5
Opi1 1/1 3276 3286 .. 1 11 [. 1.4 3
DUF494 1/1 3291 3302 .. 146 157 .] 2.2 2.7
DUF2550 1/1 3324 3343 .. 117 136 .] 2.8 3.8
Cytomega_TRL10 1/1 3363 3370 .. 1 9 [. 0.3 9.2
Drf_FH3 1/1 3402 3415 .. 1 14 [. 0.8 4.6
Glyco_hydro_42M 1/1 3403 3418 .. 215 231 .] 0.5 7.3
DUF2029 1/1 3430 3450 .. 179 199 .. 0.6 10
EST1_DNA_bind 1/1 3454 3462 .. 67 75 .] 3.1 2.8
Peptidase_M16_C 2/2 3483 3510 .. 172 198 .] 6.5 0.24
DUF438 1/1 3494 3507 .. 42 56 .. 2.4 3.2
Beta_elim_lyase 1/1 3604 3633 .. 368 397 .] 2.1 1.5
Leader_Thr 1/1 3645 3663 .. 1 23 [] 4.4 3.5
MTP18 1/1 3706 3717 .. 176 187 .] 2.3 3.4
DUF2296 1/1 3708 3719 .. 1 12 [. 2.2 7.2
GumN 1/1 3719 3729 .. 276 286 .] 2.8 2
HisG 1/1 3769 3785 .. 171 189 .] 1.5 6.8
SelB-wing_3 2/2 3808 3824 .. 1 17 [. 1.4 13
p25-alpha 1/1 3821 3840 .. 1 23 [. 2.1 4.3
GerE 1/1 3859 3870 .. 47 58 .] 3.0 5.8
DUF1970 1/1 3864 3883 .. 98 117 .] 4.8 0.11
Transposase_Tc5 1/1 3911 3922 .. 1 13 [. 0.5 5.8
Nha1_C 1/1 3923 3928 .. 1 6 [. 1.0 7.7
GRASP55_65 1/1 3973 3997 .. 358 382 .] 2.9 1.5
Cytochrom_B558a 1/1 4026 4043 .. 174 191 .] -0.6 6.1
LysM 1/1 4040 4109 .] 1 45 [] 23.4 8.5e-06
Flagellin_N 1/1 4070 4080 .. 1 11 [. 1.6 8
Alignments of top-scoring domains:
HrpB2: domain 1 of 1, from 27 to 44: score -0.3, E = 6.3
*->aagtaAaaPvapavpqeLv<-*
+gt++a+P++ + q+L+
gi|1713181 27 -NGTGGAPPAQTPEQQALA 44
Plasmid_RAQPRD: domain 1 of 2, from 31 to 47: score 1.2, E = 6.5
*->aaaAdaaaERerLaavl<-*
+a + ++E+++Laa++
gi|1713181 31 GAPPAQTPEQQALAAAQ 47
Peptidase_M16_C: domain 1 of 2, from 46 to 84: score 1.3, E = 7
CS E ECCCCHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHH
*->a.tdpegenldeRvlelileeleklaeeGiteeelerakaql<-*
a+++++ +l + + ++ +++l++l ++G ++++l+ +
gi|1713181 46 AqAETQ--RLLQ-LAQAEMATLKRLHDQGASQADLDNQVKKA 84
DUF1974: domain 1 of 1, from 61 to 77: score 3.9, E = 0.22
*->SAvLKRyeDeGrpeaDl<-*
+A+LKR +D+G +aDl
gi|1713181 61 MATLKRLHDQGASQADL 77
Phage_attach: domain 1 of 1, from 61 to 76: score -1.1, E = 9.3
*->MadfdNLFDeAisrAD<-*
Ma L D+ s+AD
gi|1713181 61 MATLKRLHDQGASQAD 76
DUF702: domain 1 of 1, from 67 to 75: score 0.5, E = 6.8
*->LYDQGpehq<-*
L+DQG ++
gi|1713181 67 LHDQGASQA 75
DUF1013: domain 1 of 1, from 73 to 88: score 4.3, E = 0.25
*->sQidLDaaVekkAakrr<-*
sQ+dLD V+k A+
gi|1713181 73 SQADLDNQVKK-AETAW 88
MCC-bdg_PDZ: domain 1 of 1, from 79 to 93: score 4.2, E = 2.3
*->ervkelysvllAlve<-*
++vk++++++ A+++
gi|1713181 79 NQVKKAETAWGAVQA 93
Toxin_13: domain 1 of 1, from 84 to 100: score 1.9, E = 5.1
CS --S--SSS-THHHHHHH
*->AsatWGaaYPACEnnCR<-*
A + WGa A En R
gi|1713181 84 AETAWGAVQAAVENQMR 100
BicD: domain 1 of 1, from 92 to 105: score -1.8, E = 7.9
*->gqaysnqrkvAkdG<-*
+ a+ nq +vA+dG
gi|1713181 92 QAAVENQMRVAADG 105
Plasmid_RAQPRD: domain 2 of 2, from 140 to 150: score 0.6, E = 9.8
*->aaaAdaaaERe<-*
a+ A++a+ER+
gi|1713181 140 AVSAESAPERA 150
Morbilli_P: domain 1 of 1, from 141 to 157: score 0.1, E = 6.9
*->AsAgNVrqsvsNAkmtQ<-*
+sA+++++ ++N+k Q
gi|1713181 141 VSAESAPERATNVKAFQ 157
Catalase-rel: domain 1 of 1, from 183 to 198: score 4.8, E = 0.97
CS HHHHHHHHHHHHHHHH
*->ykvDpdlGarVAkaLg<-*
+++Dpd G+++++a g
gi|1713181 183 RRADPDVGTQLRDAAG 198
Coat_X: domain 1 of 1, from 249 to 260: score 3.1, E = 5.2
*->knekVaQellQl<-*
++++++Qel Q+
gi|1713181 249 DEADITQELSQA 260
BAR_3_WASP_bdg: domain 1 of 1, from 253 to 265: score 2.7, E = 3.3
*->vaeKLeealskYd<-*
+++ L +a s+Yd
gi|1713181 253 ITQELSQAQSQYD 265
Pox_A11: domain 1 of 1, from 379 to 384: score -0.9, E = 4.5
*->MTtvPV<-*
MT+vPV
gi|1713181 379 MTGVPV 384
DUF1154: domain 1 of 1, from 414 to 423: score 7.7, E = 0.057
*->HaKErssmQK<-*
HaK+++++QK
gi|1713181 414 HAKDKAGLQK 423
Phage_tail_T: domain 1 of 1, from 449 to 455: score 2.5, E = 1.5
*->GPDSepg<-*
GPDS+pg
gi|1713181 449 GPDSNPG 455
DUF1493: domain 1 of 1, from 524 to 531: score 0.1, E = 9.8
*->KAGRWLYD<-*
KAG+W D
gi|1713181 524 KAGKWMQD 531
Type_III_YscX: domain 1 of 1, from 628 to 656: score 2.7, E = 2.1
*->ldtTlaRLrsLLqesgsseLqaAaeLLestqeDeR<-*
+d+ +r++L + +++L + +LL ++q D+R
gi|1713181 628 FDG----VRQALSSGVDPALSK--SLLSKMQNDDR 656
DUF1112: domain 1 of 1, from 647 to 655: score 1.9, E = 2.9
*->LLskLqsrD<-*
LLsk+q++D
gi|1713181 647 LLSKMQNDD 655
RHD3: domain 1 of 1, from 655 to 684: score -1.9, E = 8.4
*->dklrefleedeevrasqemkkssskesees<-*
d++r ++d ++r q++k + +k+++e
gi|1713181 655 DRFRSGFANDFQLRYDQGTKNAQNKQQKET 684
DUF2036: domain 1 of 1, from 688 to 697: score 0.6, E = 7.6
*->dYkLLELded<-*
+YkL+++d+d
gi|1713181 688 SYKLFQADPD 697
OpcA: domain 1 of 1, from 716 to 736: score -0.7, E = 8.4
CS EEEEEEEETTEEEEEEEEEEEE
*->YtYtqtLsDsLnFRvGAGLGle<-*
Yt+t t sD + vGAGLGl+
gi|1713181 716 YTFT-TGSDQMTNFVGAGLGLQ 736
DUF2478: domain 1 of 1, from 740 to 759: score 1.3, E = 7.3
*->iAAvvyddggdp.DalLaef<-*
++Av++d+ ++p+ alL+++
gi|1713181 740 LGAVPTDRNDVPsMALLEQL 759
DUF1035: domain 1 of 1, from 798 to 813: score 1.1, E = 9.7
*->vGssnAtivsLVplFYl<-*
vG + +vsLVp++Y+
gi|1713181 798 VGG-DHAVVSLVPIYYV 813
Glyco_hydro_70: domain 1 of 1, from 860 to 884: score 1.0, E = 1.8
*->ndgqtFLPKqLtnkesetTGFvrdGk<-*
+dg+++ PK Lt + ++ GF++
gi|1713181 860 DDGKLYVPKSLTTDGATG-GFSQYES 884
SUR7: domain 1 of 1, from 919 to 941: score 1.0, E = 7
*->GikaslGtkmfAftWaAVaflLl<-*
Gi a +G +++++W+AV++ ++
gi|1713181 919 GIGAPVGGLLLGAAWTAVGAGMA 941
DUF2190: domain 1 of 1, from 925 to 943: score 2.1, E = 5
*->gNtliGvAwaaaAagsGaatv<-*
g+ l G+Aw+a++ag+ a++
gi|1713181 925 GGLLLGAAWTAVGAGM--AVG 943
Cbl_N2: domain 1 of 1, from 1069 to 1078: score 2.6, E = 5.1
CS GHHHHHHHHC
*->tLlrNWqtLa<-*
+L++NW+ L
gi|1713181 1069 SLVKNWDALS 1078
YjeF_N: domain 1 of 1, from 1096 to 1106: score 1.0, E = 5.8
*->lGipglvLMEr<-*
+G+ +++LMEr
gi|1713181 1096 MGLGSHTLMER 1106
ELFV_dehydrog: domain 1 of 1, from 1128 to 1136: score 0.6, E = 6.8
CS HHHHHHHCS
*->VAdAMkarG<-*
VA+AM a+G
gi|1713181 1128 VANAMFANG 1136
DUF1349: domain 1 of 1, from 1172 to 1185: score 0.2, E = 9.6
*->SPereGfkVtFsef<-*
+P ++G+ ++Fs++
gi|1713181 1172 APADKGLRARFSDW 1185
Chal_sti_synt_N: domain 1 of 1, from 1219 to 1237: score -0.5, E = 7.5
CS HHCCCB--EEEEEEEESS-
*->VGqALFGDGAaAvIvGsDP<-*
V+ AL G GA++ G+ P
gi|1713181 1219 VADALAGEGASSPANGAHP 1237
RALF: domain 1 of 1, from 1245 to 1266: score 1.2, E = 9.2
*->eeeaeavalevasrRvLqatkr<-*
++a +++l+++ R+Lq ++r
gi|1713181 1245 RVAADRAMLSEVVGRILQSGNR 1266
DUF2164: domain 1 of 1, from 1266 to 1280: score 3.0, E = 4.9
*->kledLDieieedlyeLEkKp<-*
+led +e+ +y+LE
gi|1713181 1266 RLED----VEYYVYALE-DA 1280
SSV1_ORF_D-335: domain 1 of 2, from 1272 to 1285: score 6.5, E = 0.17
*->YYVYkIEkDneGkvr<-*
YYVY +E eG+vr
gi|1713181 1272 YYVYALED-AEGNVR 1285
Methyltransf_11: domain 1 of 2, from 1521 to 1544: score 1.3, E = 13
*->LDvGcGtGllaraLarrvgpgarvtGvD<-*
L + cG G + +La++ a+v GvD
gi|1713181 1521 LYA-CGAGSRVSPLAQL---LANVLGVD 1544
NDUF_B8: domain 1 of 1, from 1603 to 1623: score 2.9, E = 0.82
*->daviraevlgVsflalkkriv<-*
avi ++ +V ++ ++r v
gi|1713181 1603 LAVIDQGAHPVNWSGVASRPV 1623
gpW: domain 1 of 1, from 1637 to 1644: score 1.6, E = 9.2
CS --------
*->RrPlGvrl<-*
R PlGv++
gi|1713181 1637 RVPLGVYV 1644
LR8: domain 1 of 1, from 1638 to 1648: score 5.3, E = 0.52
*->tsLglylrkmf<-*
++Lg+y+++m
gi|1713181 1638 VPLGVYVWRML 1648
XPC-binding: domain 1 of 1, from 1696 to 1713: score 4.7, E = 1.8
*->NPqLlqlIqqNqeeFlrLLnepaeg<-*
NP+Llq eF +L+++p+ g
gi|1713181 1696 NPELLQ-------EFADLIQAPVFG 1713
DUF2351: domain 1 of 1, from 1706 to 1729: score 1.0, E = 3.6
*->lidsrsydrkkadestsaGWwkDlPS<-*
li+++++ r ++ ++aGWw+ lP+
gi|1713181 1706 LIQAPVFGR--LGDDDAAGWWRALPN 1729
RAG2: domain 1 of 1, from 1809 to 1826: score -1.7, E = 8.2
*->tmkkltpaKKsFLRRLFe<-*
+m+ t a K F RRL e
gi|1713181 1809 IMNGKTIAPKEFARRLLE 1826
Pas_Saposin: domain 1 of 1, from 1821 to 1830: score 2.0, E = 7
*->avalLEdpey<-*
a++lLEdp y
gi|1713181 1821 ARRLLEDPAY 1830
EspF: domain 1 of 1, from 1893 to 1907: score 1.4, E = 4.9
*->PDvAqRLvqHLAEHG<-*
PDvA RL H+ E
gi|1713181 1893 PDVATRLYLHVPEAP 1907
SSV1_ORF_D-335: domain 2 of 2, from 1951 to 1974: score 0.7, E = 10
*->grgGvwltp.nagrgGlePgtpgs<-*
gr+G ++ ++ agr+G+ Pg p
gi|1713181 1951 GRRGAGGASgDAGRQGVTPGEPAH 1974
DUF952: domain 1 of 1, from 2002 to 2010: score 2.5, E = 6.2
*->IataseWea<-*
I+ta+eW+a
gi|1713181 2002 IFTADEWAA 2010
Ribosomal_S3_N: domain 1 of 1, from 2029 to 2045: score 1.8, E = 6.2
*->nknlknaSnegisrieIeRkid<-*
+k ++++ sr++ Rki+
gi|1713181 2029 QKIYPPN-----SRVYTDRKIA 2045
PSCyt1: domain 1 of 1, from 2083 to 2091: score 3.7, E = 1.4
*->ddgeMPPpd<-*
d+++MPP+d
gi|1713181 2083 DTLLMPPDD 2091
Pro-kuma_activ: domain 1 of 1, from 2125 to 2140: score 5.7, E = 0.58
*->gkfLsreevaalfaPs<-*
g++L+++eva+++aP+
gi|1713181 2125 GRPLTPDEVAERVAPH 2140
CPT: domain 1 of 1, from 2129 to 2142: score 2.7, E = 1.7
CS -HHHHHHHHHTT--
*->tpeECArrIrerle<-*
tp+E A+r++ +le
gi|1713181 2129 TPDEVAERVAPHLE 2142
PRCH: domain 1 of 1, from 2155 to 2165: score 0.8, E = 7.2
CS SSBSEEETTT-
*->GhnKIkPlrva<-*
G nK Plrva
gi|1713181 2155 GSNKHDPLRVA 2165
tRNA-synt_2c: domain 1 of 1, from 2213 to 2224: score -0.8, E = 9.9
CS XXXXXXXXXXXX
*->GdtVtavvDedr<-*
G+ t++vD+dr
gi|1713181 2213 GTRLTGQVDKDR 2224
Apidaecin: domain 1 of 1, from 2242 to 2275: score 3.5, E = 1.5
*->lrakPEAEP......GnnRPvYiPqPRPPHPRlr<-*
l a P AEP++++++ RP+ P PRP PR+
gi|1713181 2242 LPAGPHAEPpptttrTASRPIADPLPRPTVPRVA 2275
Beta-lactamase: domain 1 of 1, from 2303 to 2331: score 0.2, E = 9.5
CS HHHHHHHHHH.HHHTTESEEEEEEEETTEEEEEEE
*->ldrlieelmaddveggipGvavavvrdGkvvvdag<-*
++ +++++++ + G a+ v++ G +v ++
gi|1713181 2303 FRTALADRPG------VIGDAARVTQPGGTVSQHW 2331
Methyltransf_11: domain 2 of 2, from 2307 to 2327: score 1.9, E = 9.2
*->laedperalrEiaRVLKPGGkl<-*
l +d++ ++ +aRV PGG++
gi|1713181 2307 L-ADRPGVIGDAARVTQPGGTV 2327
DUF1094: domain 1 of 1, from 2338 to 2354: score 3.4, E = 2.4
*->GreaeeIaanLteAFde<-*
G+e+ +++ ++AFd+
gi|1713181 2338 GAEPTRVIDGVMQAFDA 2354
Peptidase_M15: domain 1 of 1, from 2415 to 2438: score 2.8, E = 1.8
CS --TTB-SSS-EEEHHHHHHHHHHH
*->PvdlyqvaRcLvhkeaaeaLakaa<-*
P +l+++aR+++h e+ aL +a+
gi|1713181 2415 PLALPEGARTVAHDELGQALDAAQ 2438
Dynactin_p62: domain 1 of 1, from 2441 to 2455: score -0.2, E = 6.5
*->AseeadkgeeviWdr<-*
+++ a +++ev +d
gi|1713181 2441 PRDHAYVPTEVLPDA 2455
DUF1175: domain 1 of 1, from 2592 to 2620: score 2.2, E = 1.7
*->apevvalstsdsaadgtpDflaaLdPedsra<-*
++++v + +sa ++tp++ a d+++ ra
gi|1713181 2592 TTPAVVPG--RSAVPATPESTAVADAQQARA 2620
Glyco_hydro_79n: domain 1 of 1, from 2623 to 2628: score -0.1, E = 4.6
*->YLDqLG<-*
+LD+LG
gi|1713181 2623 WLDTLG 2628
PNPase: domain 1 of 1, from 2633 to 2639: score 4.2, E = 0.21
CS B-TTS-B
*->pRIDGRe<-*
+RIDGR+
gi|1713181 2633 TRIDGRH 2639
Cas_Cmr5: domain 1 of 1, from 2694 to 2721: score 0.9, E = 7.3
*->TLeQerAkfAyeaveevkksygkkkrgkY<-*
L+ +rA +A+ ++ e ++s+g+ rgkY
gi|1713181 2694 -LDGKRAPHALTKALENAGSGGRRARGKY 2721
HTH_psq: domain 1 of 1, from 2835 to 2850: score 2.4, E = 9.9
*->rSTLwlrrlrggyslkr<-*
r+ ++ rr+rgg+++ r
gi|1713181 2835 RTVFR-RRRRGGIPVGR 2850
DUF2125: domain 1 of 1, from 2844 to 2853: score 1.9, E = 0.7
*->GpiPLGqiPp<-*
G iP+G+ P+
gi|1713181 2844 GGIPVGRSPR 2853
Not1: domain 1 of 1, from 2894 to 2918: score -0.0, E = 7.9
*->LFqsvakycmglkssqqvmqsegae<-*
LFqs++ +l+ +++++ +a+
gi|1713181 2894 LFQSIVPVRRPLSRAEEGDDANAAP 2918
SRR1: domain 1 of 1, from 2922 to 2938: score 3.5, E = 5.9
*->YDPvFnalekefleelG<-*
+DP + +++k++l+ ++
gi|1713181 2922 VDPHLLPSDKSALNAVD 2938
DUF632: domain 1 of 1, from 2929 to 2947: score 0.1, E = 8
*->pdkevleAIksFasvvhai<-*
+dk +l+A++ ++v ++
gi|1713181 2929 SDKSALNAVDFSGNSVSHL 2947
Chlam_PMP: domain 1 of 1, from 2936 to 2959: score 6.2, E = 2.2
*->ditFsgNsa.....aggGGAiyas<-*
+++FsgNs+++ +a ++GA+ +
gi|1713181 2936 AVDFSGNSVshllsAIRNGALDGG 2959
Ribonuc_2-5A: domain 1 of 1, from 2939 to 2953: score 2.2, E = 3.9
*->YkgsSvrDLLRaiRN<-*
++g+Sv +LL aiRN
gi|1713181 2939 FSGNSVSHLLSAIRN 2953
Mu-transpos_C: domain 1 of 1, from 2963 to 2975: score 3.2, E = 4.3
*->VlVyrqdGNeerflceA<-*
++V+r dG ++eA
gi|1713181 2963 IYVFRTDG----AVAEA 2975
DUF526: domain 1 of 1, from 3043 to 3049: score 2.1, E = 6.2
*->RlaaLEa<-*
R+aaLEa
gi|1713181 3043 RVAALEA 3049
ABM: domain 1 of 1, from 3054 to 3073: score 4.4, E = 2.6
CS EEEEESSHHHHHHHHTSHHHHH
*->ilevWedeaAfeahlqsphfka<-*
++ +W+d++A + l+s+ f+a
gi|1713181 3054 LHDQWKDAEA--RSLNSAPFRA 3073
DUF2390: domain 1 of 1, from 3057 to 3094: score 8.1, E = 0.052
*->lWLaqrGlaldaerlqaLqaaaepWreevvqPLRalRr<-*
+W +++ ++l+ + ++aL a++++ +ev++ LR+lRr
gi|1713181 3057 QWKDAEARSLNSAPFRALAARTRHGYNEVLGDLRRLRR 3094
HyaE: domain 1 of 1, from 3074 to 3085: score 2.3, E = 2.4
*->LiqRLltrfGwpvV<-*
L++R tr+G+++V
gi|1713181 3074 LAAR--TRHGYNEV 3085
MutS_IV: domain 1 of 1, from 3081 to 3096: score 2.8, E = 5.1
*->gfdeeLDelrdlleel<-*
g++e L lr+l++++
gi|1713181 3081 GYNEVLGDLRRLRRNG 3096
PhyH: domain 1 of 1, from 3118 to 3148: score 0.4, E = 5.9
CS HHHHHHSEEEETT..-S-H HHHHHHHHHHHHH
*->affredGylviegErflsp.eevaalraeaerl<-*
+f ++G++ e ++ +e+++a+++ a+r+
gi|1713181 3118 QFGLRNGAAKPEQ--YFAThEQIEAYNKQAQRP 3148
SelB-wing_3: domain 1 of 2, from 3196 to 3212: score 0.7, E = 23
*->vkalleehGeitvaefR<-*
++a+ + G++tva+ R
gi|1713181 3196 LRAHTRNLGAATVADKR 3212
Herpes_IE2_3: domain 1 of 1, from 3207 to 3229: score 0.9, E = 7.8
*->qvnnktIvqiyTRsqeVreavdalrekLg<-*
+v +k I+qi+TRs e al+++++
gi|1713181 3207 TVADKRIQQIFTRSNE------ALQDRMV 3229
LEA_3: domain 1 of 1, from 3231 to 3236: score 0.9, E = 8.3
*->MARSls<-*
MARS+s
gi|1713181 3231 MARSFS 3236
FTHFS: domain 1 of 1, from 3236 to 3246: score -0.4, E = 5.3
*->SlSdDPkllGa<-*
SlSdDP+l Ga
gi|1713181 3236 SLSDDPALMGA 3246
Hydrolase: domain 1 of 1, from 3237 to 3301: score 2.1, E = 3.5
CS EESSEH HHHHHHHHTTHG GTSEEEECHHHTEEGSTTSTTTSHHHH
*->lTggdr.naeallealgla.lfdvivdsdevggvgpivvgKPkpeif
l++++ + + + ++ g+ + + ++d + ++ ++ gK ++ f
gi|1713181 3237 LSDDPAlMGALVERYGGVMpVVTLVIDPHSLA---AVL-GKAHDPDF 3279
CS HHHHHHHTSSGGGE.....EEEESSCHHHH
llalerlgvkpeevakpevlmVGDgvnDap<-*
l+a+++lg + +++ Dg n+++
gi|1713181 3280 LRAVRALGDQKN-------AVF-DGENGMI 3301
Oxidored_nitro: domain 1 of 1, from 3268 to 3323: score -0.0, E = 3.5
CS EEEESS-HHHHHHHHHHHHHHCGTCC T TEEEES
*->atgttfghsddyekeprallkaspag.d.............eeavii
a++ +++h+ d+ +++ral ++ +a d++++ ++ ++++ +a+ +
gi|1713181 3268 AAVLGKAHDPDFLRAVRALGDQKNAVfDgengmihpapdsdGPALAL 3314
CS CCHHHHHHH
dDlndlesl<-*
dDl +l+ +
gi|1713181 3315 DDLAHLHRW 3323
Opi1: domain 1 of 1, from 3276 to 3286: score 1.4, E = 3
*->DvdvlraaSaL<-*
D+d+lra+ aL
gi|1713181 3276 DPDFLRAVRAL 3286
DUF494: domain 1 of 1, from 3291 to 3302: score 2.2, E = 2.7
*->eLlFdeeegllH<-*
+ +Fd e+g++H
gi|1713181 3291 NAVFDGENGMIH 3302
DUF2550: domain 1 of 1, from 3324 to 3343: score 2.8, E = 3.8
*->mdpdAlTGFlSWLESaPpgr<-*
+d++A TGF LE aP++
gi|1713181 3324 LDEAARTGFAIRLETAPSRA 3343
Cytomega_TRL10: domain 1 of 1, from 3363 to 3370: score 0.3, E = 9.2
*->mYprvmhav<-*
Y+rvm+a+
gi|1713181 3363 -YVRVMSAL 3370
Drf_FH3: domain 1 of 1, from 3402 to 3415: score 0.8, E = 4.6
CS THHHHHHHHHHHHH
*->gGhelvleaiinfk<-*
gGhe++l+a+++ k
gi|1713181 3402 GGHEKLLRAVLERK 3415
Glyco_hydro_42M: domain 1 of 1, from 3403 to 3418: score 0.5, E = 7.3
CS HHHHHHHHHHHH.TT--
*->fldallekllaevagle<-*
++++ll+++l++ +gle
gi|1713181 3403 GHEKLLRAVLER-KGLE 3418
DUF2029: domain 1 of 1, from 3430 to 3450: score 0.6, E = 10
*->plafagNQSlrGvLaRLgged<-*
+++f+gNQ l+G+La L +e+
gi|1713181 3430 GADFVGNQDLTGALAKLIVEN 3450
EST1_DNA_bind: domain 1 of 1, from 3454 to 3462: score 3.1, E = 2.8
*->edipDrLvG<-*
+di++rL+G
gi|1713181 3454 PDIINRLHG 3462
Peptidase_M16_C: domain 2 of 2, from 3483 to 3510: score 6.5, E = 0.24
CS HHHHHHHHHHHHT T-SHHHHHHHHHHH
*->elileeleklaee.Giteeelerakaql<-*
+l+++e+e++ +G+t++e++++++ +
gi|1713181 3483 QLLFAEVERIGIAdGMTPAEVAALRQKI 3510
DUF438: domain 1 of 1, from 3494 to 3507: score 2.4, E = 3.2
*->iaeGgmppeEiqkLC<-*
ia+G m+p+E++ L+
gi|1713181 3494 IADG-MTPAEVAALR 3507
Beta_elim_lyase: domain 1 of 1, from 3604 to 3633: score 2.1, E = 1.5
CS CCHHHCHHCCCEEBETCCC-CCCCCCCCHC
*->rrLaeglellrlviprrvyTntnmvfvaea<-*
rr a++l+ ++++++ r++++++ + v++
gi|1713181 3604 RREAAQLAKIDIPDEKRAQAELHALRVHDE 3633
Leader_Thr: domain 1 of 1, from 3645 to 3663: score 4.4, E = 3.5
*->mkrislnttiittieittGyGAG<-*
+ri+ it ++t G GAG
gi|1713181 3645 -RRIA---GDITAATLTGGAGAG 3663
MTP18: domain 1 of 1, from 3706 to 3717: score 2.3, E = 3.4
*->pypFDepVEeav<-*
p +FD+ V+++v
gi|1713181 3706 PRVFDRVVDRLV 3717
DUF2296: domain 1 of 1, from 3708 to 3719: score 2.2, E = 7.2
*->wyDRilDiLvGe<-*
++DR++D Lv++
gi|1713181 3708 VFDRVVDRLVRG 3719
GumN: domain 1 of 1, from 3719 to 3729: score 2.8, E = 2
*->GvldlLRarGy<-*
G++++L+a G+
gi|1713181 3719 GLQAQLKANGF 3729
HisG: domain 1 of 1, from 3769 to 3785: score 1.5, E = 6.8
CS HCHH.HHHHHHHHHHHHCH
*->ekedlelidelvtrLegVi<-*
++++ + ++++++++gV+
gi|1713181 3769 HTKA--IAADMLAQMQGVV 3785
SelB-wing_3: domain 2 of 2, from 3808 to 3824: score 1.4, E = 13
*->vkalleehGeitvaefR<-*
v al + G+it+++fR
gi|1713181 3808 VLALGGYGGSITMNAFR 3824
p25-alpha: domain 1 of 1, from 3821 to 3840: score 2.1, E = 4.3
CS HHHHHHHHHHS--..SS-----H
*->leeqFkkFtkfGdsKAdGkeMtG<-*
+F++Ft +Gd A G+ + G
gi|1713181 3821 --NAFRAFT-HGDLLAGGQAIGG 3840
GerE: domain 1 of 1, from 3859 to 3870: score 3.0, E = 5.8
CS T-SSHHHHHHHH
*->nvhsrvelirla<-*
n+ +r +l+r a
gi|1713181 3859 NAENRSQLARIA 3870
DUF1970: domain 1 of 1, from 3864 to 3883: score 4.8, E = 0.11
*->sqLnnYAesLnDYLAsqAGv<-*
sqL A++ DYL s G+
gi|1713181 3864 SQLARIASATGDYLTSAVGI 3883
Transposase_Tc5: domain 1 of 1, from 3911 to 3922: score 0.5, E = 5.8
*->ifeLrkkFPdplp<-*
+ L+ +FP+ +p
gi|1713181 3911 -GRLHSHFPNATP 3922
Nha1_C: domain 1 of 1, from 3923 to 3928: score 1.0, E = 7.7
*->WMqRLP<-*
WM+RLP
gi|1713181 3923 WMERLP 3928
GRASP55_65: domain 1 of 1, from 3973 to 3997: score 2.9, E = 1.5
*->sasqttyspPsaPvsvqAtadesas<-*
+ ++++ s++++P++++A a++ as
gi|1713181 3973 GTPAPGASFAPSPGATTAPAQPTAS 3997
Cytochrom_B558a: domain 1 of 1, from 4026 to 4043: score -0.6, E = 6.1
CS XXXXXXXXXXXXXXXXXX
*->vpaGgPqvnPiPvtDEvv<-*
+p+ +P +P P t vv
gi|1713181 4026 APTSSPSPTPTPLTVNVV 4043
LysM: domain 1 of 1, from 4040 to 4109: score 23.4, E = 8.5e-06
CS EE--TT--HHHHHHHT TS-IIII
*->YtVkkGDTLwsIArry........................gvsvseL
+ V GD+Lw IA r++++ + + +++++ +++++ +v ++e+
gi|1713181 4040 VNVVAGDSLWTIAERHegsllaaahvpadeqqrmsdgqriNVALNEI 4086
CS IITS-TT-SS. .--TT-EEEET
aelNpgLsspn.tlyvGQvLkiP<-*
++lN++L+++ +++ +GQ+ ++
gi|1713181 4087 LQLNRNLAGNPgEIAPGQQVIVG 4109
Flagellin_N: domain 1 of 1, from 4070 to 4080: score 1.6, E = 8
CS HHHHTS--TTT
*->qeRLSSGlRIN<-*
q+R+S G RIN
gi|1713181 4070 QQRMSDGQRIN 4080
//