hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 172037948.fa
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Query sequence: gi|172037948|ref|YP_001804449.1|
Accession: [none]
Description: hypothetical protein cce_3035 [Cyanothece sp. ATCC 51142]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PKD PKD domain 38.0 3.9e-11 10
HemolysinCabind Hemolysin-type calcium-binding repeat 35.2 1.7e-09 5
Colipase Colipase, N-terminal domain 34.1 8.8e-09 10
Extensin_1 Extensin-like protein repeat 13.5 0.0046 8
CRAM_rpt Cysteine-rich, acidic integral membra 6.1 0.08 1
FecR FecR protein 8.4 0.11 6
Ribosomal_S19e Ribosomal protein S19e 4.4 0.87 1
Phage_Mu_P Bacteriophage Mu P protein 3.4 0.89 1
BAALC_N BAALC N-terminus 3.8 2.2 1
DRMBL DNA repair metallo-beta-lactamase 3.1 2.4 1
DUF1577 Protein of unknown function (DUF1577) 0.7 2.6 1
Toxin_3 Scorpion toxin-like domain 4.1 2.7 1
DUF688 Protein of unknown function (DUF688) -0.0 3.2 1
RHD Rel homology domain (RHD) 1.7 3.7 2
SoxZ Sulphur oxidation protein SoxZ 2.2 4.2 3
Allene_ox_cyc Allene oxide cyclase 0.5 4.8 1
AsnC_trans_reg AsnC family 3.1 5.1 1
fn3 Fibronectin type III domain 2.6 5.1 1
HNF-1A_C Hepatocyte nuclear factor 1 (HNF-1), 1.3 6.3 4
Gemini_mov Geminivirus putative movement protein 1.0 7.8 1
DUF477 Domain of unknown function (DUF477) 1.4 8.1 1
DUF862 PPPDE putative peptidase domain 0.2 8.6 1
Germane Sporulation and spore germination 1.7 8.7 1
DHC Dihaem cytochrome c 0.8 8.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AsnC_trans_reg 1/1 92 125 .. 1 36 [. 3.1 5.1
DUF477 1/1 103 115 .. 155 167 .] 1.4 8.1
DRMBL 1/1 111 126 .. 1 16 [. 3.1 2.4
DUF862 1/1 132 156 .. 95 126 .. 0.2 8.6
Ribosomal_S19e 1/1 172 192 .. 121 141 .] 4.4 0.87
DUF1577 1/1 188 203 .. 392 407 .] 0.7 2.6
Allene_ox_cyc 1/1 224 251 .. 42 69 .. 0.5 4.8
Phage_Mu_P 1/1 355 369 .. 341 355 .] 3.4 0.89
Toxin_3 1/1 359 367 .. 1 16 [. 4.1 2.7
Gemini_mov 1/1 370 390 .. 81 101 .] 1.0 7.8
Germane 1/1 411 436 .. 99 124 .] 1.7 8.7
fn3 1/1 417 430 .. 1 14 [. 2.6 5.1
Colipase 1/10 585 596 .. 1 12 [. 1.5 14
SoxZ 1/3 594 622 .. 76 104 .] 0.7 12
PKD 1/10 605 622 .. 75 92 .] 3.8 1.2
RHD 1/2 617 637 .. 173 199 .] 0.9 6.5
DUF688 1/1 624 660 .. 124 160 .. -0.0 3.2
FecR 1/6 677 698 .. 12 37 .. 0.6 19
Colipase 2/10 698 709 .. 1 12 [. 1.5 14
SoxZ 2/3 707 735 .. 76 104 .] 0.7 12
PKD 2/10 718 735 .. 75 92 .] 3.8 1.2
RHD 2/2 730 750 .. 173 199 .] 0.9 6.5
FecR 2/6 790 811 .. 12 37 .. 0.6 19
Colipase 3/10 811 822 .. 1 12 [. 1.5 14
SoxZ 3/3 820 848 .. 76 104 .] 0.7 12
PKD 3/10 831 848 .. 75 92 .] 3.8 1.2
Extensin_1 1/8 854 863 .. 1 10 [] 1.7 21
Colipase 4/10 927 938 .. 1 12 [. 4.2 2.3
PKD 4/10 947 964 .. 75 92 .] 3.8 1.2
Extensin_1 2/8 970 979 .. 1 10 [] 1.7 21
Colipase 5/10 1043 1054 .. 1 12 [. 4.2 2.3
PKD 5/10 1063 1080 .. 75 92 .] 3.8 1.2
Extensin_1 3/8 1086 1095 .. 1 10 [] 1.7 21
Colipase 6/10 1159 1170 .. 1 12 [. 4.2 2.3
PKD 6/10 1179 1196 .. 75 92 .] 3.8 1.2
Extensin_1 4/8 1202 1211 .. 1 10 [] 1.7 21
HNF-1A_C 1/4 1227 1238 .. 1 12 [. 0.3 13
FecR 3/6 1254 1275 .. 12 37 .. 1.8 8.4
Colipase 7/10 1275 1286 .. 1 12 [. 4.2 2.3
PKD 7/10 1295 1312 .. 75 92 .] 3.8 1.2
Extensin_1 5/8 1318 1327 .. 1 10 [] 1.7 21
HNF-1A_C 2/4 1343 1354 .. 1 12 [. 0.3 13
FecR 4/6 1370 1391 .. 12 37 .. 1.8 8.4
Colipase 8/10 1391 1402 .. 1 12 [. 4.2 2.3
PKD 8/10 1411 1428 .. 75 92 .] 3.8 1.2
Extensin_1 6/8 1434 1443 .. 1 10 [] 1.7 21
HNF-1A_C 3/4 1459 1470 .. 1 12 [. 0.3 13
FecR 5/6 1486 1507 .. 12 37 .. 1.8 8.4
Colipase 9/10 1507 1518 .. 1 12 [. 4.2 2.3
PKD 9/10 1527 1544 .. 75 92 .] 3.8 1.2
Extensin_1 7/8 1550 1559 .. 1 10 [] 1.7 21
HNF-1A_C 4/4 1575 1586 .. 1 12 [. 0.3 13
FecR 6/6 1602 1623 .. 12 37 .. 1.8 8.4
Colipase 10/10 1623 1634 .. 1 12 [. 4.2 2.3
PKD 10/10 1643 1660 .. 75 92 .] 3.8 1.2
Extensin_1 8/8 1666 1675 .. 1 10 [] 1.7 21
BAALC_N 1/1 1696 1718 .. 31 53 .] 3.8 2.2
HemolysinCabind 1/5 1770 1781 .. 1 12 [. 1.8 23
CRAM_rpt 1/1 1776 1799 .. 1 24 [] 6.1 0.08
HemolysinCabind 2/5 1790 1802 .. 6 18 .] 6.6 0.81
HemolysinCabind 3/5 1805 1822 .. 1 18 [] 15.4 0.0016
HemolysinCabind 4/5 1827 1839 .. 6 18 .] 5.5 1.7
HemolysinCabind 5/5 1840 1857 .. 1 18 [] 5.9 1.3
DHC 1/1 1852 1859 .. 115 122 .] 0.8 8.8
Alignments of top-scoring domains:
AsnC_trans_reg: domain 1 of 1, from 92 to 125: score 3.1, E = 5.1
CS EEEEEEE-TT-....HHHHHHHHHT-TTEEEEEEES
*->AfvlvkleprhseealdafeealaaiPEVvecyrvt<-*
+ + l+ rh ++ ++++ e la++ ++ ++++v+
gi|1720379 92 GVTSIILD-RH-RDGIEQITEVLATHRNIASIHLVS 125
DUF477: domain 1 of 1, from 103 to 115: score 1.4, E = 8.1
*->aaidalgallage<-*
++i++++++la +
gi|1720379 103 DGIEQITEVLATH 115
DRMBL: domain 1 of 1, from 111 to 126: score 3.1, E = 2.4
*->vlTtdesesriHavpm<-*
vl t +++++iH+v++
gi|1720379 111 VLATHRNIASIHLVSH 126
DUF862: domain 1 of 1, from 132 to 156: score 0.2, E = 8.6
*->ivldlelGeTelteeefreiLesLsefeeytg<-*
i lG+T l+ + f+ +L++L++ ++g
gi|1720379 132 I----QLGNTQLSLHTFDKYLSQLKS---WSG 156
Ribosomal_S19e: domain 1 of 1, from 172 to 192: score 4.4, E = 0.87
*->lTsqGrRDLDRIAkqvrdede<-*
l +qGrR+LDR + ++++
gi|1720379 172 LGEQGRRFLDRLHQITGANIA 192
DUF1577: domain 1 of 1, from 188 to 203: score 0.7, E = 2.6
*->GielvgksdlPgerai<-*
G++++++sd+ g+ ++
gi|1720379 188 GANIAASSDRVGNALK 203
Allene_ox_cyc: domain 1 of 1, from 224 to 251: score 0.5, E = 4.8
CS EE--EEEETTS--EEEEEEEEEEEEEEE
*->PFsnKlYtgdLkkRiGitaGlCiliqhk<-*
P + + Y g + RiGita +l++++
gi|1720379 224 PQTQRAYAGVFQPRIGITADNLVLVEDE 251
Phage_Mu_P: domain 1 of 1, from 355 to 369: score 3.4, E = 0.89
*->sVaPpDafLpepesa<-*
++ P+D++++ p++
gi|1720379 355 RLLPRDGYDVDPNAS 369
Toxin_3: domain 1 of 1, from 359 to 367: score 4.1, E = 2.7
CS EE.....EE..BBCTT
*->rDseCLKGYGGivdpk<-*
rD GY +vdp+
gi|1720379 359 RD-----GY--DVDPN 367
Gemini_mov: domain 1 of 1, from 370 to 390: score 1.0, E = 7.8
*->ElgFGptearSALArsgavpp<-*
E++F +++rS LA+++++p
gi|1720379 370 EITFTLADTRSQLAPPPSPPT 390
Germane: domain 1 of 1, from 411 to 436: score 1.7, E = 8.7
*->VnTLtqfpgvdkVqilveGkplellg<-*
++TL + p+ + V ++v+G l
gi|1720379 411 TFTLSEPPPPEGVTVTVNGDVAQNLN 436
fn3: domain 1 of 1, from 417 to 430: score 2.6, E = 5.1
CS ----CEEEEEEECT
*->PsaPtnltvtdvts<-*
P++P+++tvt +++
gi|1720379 417 PPPPEGVTVTVNGD 430
Colipase: domain 1 of 10, from 585 to 596: score 1.5, E = 14
CS ----SSSB-TTS
*->PRGiiinLedGE<-*
P G++ nLe GE
gi|1720379 585 PNGVFDNLETGE 596
SoxZ: domain 1 of 3, from 594 to 622: score 0.7, E = 12
CS E--S-EE.EEEEEEETTS-EEEEEEEE--
*->kadkaGdelkfsWtDnkGssetaeakItv<-*
+++ a d+++ + D G++ ta+a+It+
gi|1720379 594 TGETATDSFNYTVSDGQGGTDTATATITI 622
PKD: domain 1 of 10, from 605 to 622: score 3.8, E = 1.2
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
tvs+g g +++ t+t+t+
gi|1720379 605 TVSDGQGGTDTATATITI 622
RHD: domain 1 of 2, from 617 to 637: score 0.9, E = 6.5
CS EEEEEECSTTSEEEE---EEECEEEET
*->qaflepdstGnftlplpPVvSnPIyDk<-*
+a + + ++ft +pPV Sn D+
gi|1720379 617 TATI---TIDGFTPNTPPVASN---DS 637
DUF688: domain 1 of 1, from 624 to 660: score -0.0, E = 3.2
*->gadhqlktvsssDkylvedakskesrldekDDdEede<-*
g+++ +++v s D + + +s ++ D d +++
gi|1720379 624 GFTPNTPPVASNDSNSTSEDSSVNGNVLNNDTDADGD 660
FecR: domain 1 of 6, from 677 to 698: score 0.6, E = 19
*->svtLpDGSLLsGrvtLnadSaldvdl<-*
++tL+ G ++tLn+d + ++d+
gi|1720379 677 EITLASGA----LLTLNSDGSYSYDP 698
Colipase: domain 2 of 10, from 698 to 709: score 1.5, E = 14
CS ----SSSB-TTS
*->PRGiiinLedGE<-*
P G++ nLe GE
gi|1720379 698 PNGVFDNLETGE 709
SoxZ: domain 2 of 3, from 707 to 735: score 0.7, E = 12
CS E--S-EE.EEEEEEETTS-EEEEEEEE--
*->kadkaGdelkfsWtDnkGssetaeakItv<-*
+++ a d+++ + D G++ ta+a+It+
gi|1720379 707 TGETATDSFNYTVSDGQGGTDTATATITI 735
PKD: domain 2 of 10, from 718 to 735: score 3.8, E = 1.2
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
tvs+g g +++ t+t+t+
gi|1720379 718 TVSDGQGGTDTATATITI 735
RHD: domain 2 of 2, from 730 to 750: score 0.9, E = 6.5
CS EEEEEECSTTSEEEE---EEECEEEET
*->qaflepdstGnftlplpPVvSnPIyDk<-*
+a + + ++ft +pPV Sn D+
gi|1720379 730 TATI---TIDGFTPNTPPVASN---DS 750
FecR: domain 2 of 6, from 790 to 811: score 0.6, E = 19
*->svtLpDGSLLsGrvtLnadSaldvdl<-*
++tL+ G ++tLn+d + ++d+
gi|1720379 790 EITLASGA----LLTLNSDGSYSYDP 811
Colipase: domain 3 of 10, from 811 to 822: score 1.5, E = 14
CS ----SSSB-TTS
*->PRGiiinLedGE<-*
P G++ nLe GE
gi|1720379 811 PNGVFDNLETGE 822
SoxZ: domain 3 of 3, from 820 to 848: score 0.7, E = 12
CS E--S-EE.EEEEEEETTS-EEEEEEEE--
*->kadkaGdelkfsWtDnkGssetaeakItv<-*
+++ a d+++ + D G++ ta+a+It+
gi|1720379 820 TGETATDSFNYTVSDGQGGTDTATATITI 848
PKD: domain 3 of 10, from 831 to 848: score 3.8, E = 1.2
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
tvs+g g +++ t+t+t+
gi|1720379 831 TVSDGQGGTDTATATITI 848
Extensin_1: domain 1 of 8, from 854 to 863: score 1.7, E = 21
*->ppvykPpvek<-*
ppv Ppv
gi|1720379 854 PPVNTPPVAT 863
Colipase: domain 4 of 10, from 927 to 938: score 4.2, E = 2.3
CS ----SSSB-TTS
*->PRGiiinLedGE<-*
P G++ nLedGE
gi|1720379 927 PNGVFDNLEDGE 938
PKD: domain 4 of 10, from 947 to 964: score 3.8, E = 1.2
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
tvs+g g +++ t+t+t+
gi|1720379 947 TVSDGQGGTDTATATITI 964
Extensin_1: domain 2 of 8, from 970 to 979: score 1.7, E = 21
*->ppvykPpvek<-*
ppv Ppv
gi|1720379 970 PPVNTPPVAT 979
Colipase: domain 5 of 10, from 1043 to 1054: score 4.2, E = 2.3
CS ----SSSB-TTS
*->PRGiiinLedGE<-*
P G++ nLedGE
gi|1720379 1043 PNGVFDNLEDGE 1054
PKD: domain 5 of 10, from 1063 to 1080: score 3.8, E = 1.2
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
tvs+g g +++ t+t+t+
gi|1720379 1063 TVSDGQGGTDTATATITI 1080
Extensin_1: domain 3 of 8, from 1086 to 1095: score 1.7, E = 21
*->ppvykPpvek<-*
ppv Ppv
gi|1720379 1086 PPVNTPPVAT 1095
Colipase: domain 6 of 10, from 1159 to 1170: score 4.2, E = 2.3
CS ----SSSB-TTS
*->PRGiiinLedGE<-*
P G++ nLedGE
gi|1720379 1159 PNGVFDNLEDGE 1170
PKD: domain 6 of 10, from 1179 to 1196: score 3.8, E = 1.2
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
tvs+g g +++ t+t+t+
gi|1720379 1179 TVSDGQGGTDTATATITI 1196
Extensin_1: domain 4 of 8, from 1202 to 1211: score 1.7, E = 21
*->ppvykPpvek<-*
ppv Ppv
gi|1720379 1202 PPVNTPPVAT 1211
HNF-1A_C: domain 1 of 4, from 1227 to 1238: score 0.3, E = 13
*->vlTsDpeahtDq<-*
vlT D+ a +D+
gi|1720379 1227 VLTNDSDADGDS 1238
FecR: domain 3 of 6, from 1254 to 1275: score 1.8, E = 8.4
*->svtLpDGSLLsGrvtLnadSaldvdl<-*
+vtL+ G ++tLn+d + ++d+
gi|1720379 1254 QVTLASGA----LLTLNSDGSYSYDP 1275
Colipase: domain 7 of 10, from 1275 to 1286: score 4.2, E = 2.3
CS ----SSSB-TTS
*->PRGiiinLedGE<-*
P G++ nLedGE
gi|1720379 1275 PNGVFDNLEDGE 1286
PKD: domain 7 of 10, from 1295 to 1312: score 3.8, E = 1.2
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
tvs+g g +++ t+t+t+
gi|1720379 1295 TVSDGQGGTDTATATITI 1312
Extensin_1: domain 5 of 8, from 1318 to 1327: score 1.7, E = 21
*->ppvykPpvek<-*
ppv Ppv
gi|1720379 1318 PPVNTPPVAT 1327
HNF-1A_C: domain 2 of 4, from 1343 to 1354: score 0.3, E = 13
*->vlTsDpeahtDq<-*
vlT D+ a +D+
gi|1720379 1343 VLTNDSDADGDS 1354
FecR: domain 4 of 6, from 1370 to 1391: score 1.8, E = 8.4
*->svtLpDGSLLsGrvtLnadSaldvdl<-*
+vtL+ G ++tLn+d + ++d+
gi|1720379 1370 QVTLASGA----LLTLNSDGSYSYDP 1391
Colipase: domain 8 of 10, from 1391 to 1402: score 4.2, E = 2.3
CS ----SSSB-TTS
*->PRGiiinLedGE<-*
P G++ nLedGE
gi|1720379 1391 PNGVFDNLEDGE 1402
PKD: domain 8 of 10, from 1411 to 1428: score 3.8, E = 1.2
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
tvs+g g +++ t+t+t+
gi|1720379 1411 TVSDGQGGTDTATATITI 1428
Extensin_1: domain 6 of 8, from 1434 to 1443: score 1.7, E = 21
*->ppvykPpvek<-*
ppv Ppv
gi|1720379 1434 PPVNTPPVAT 1443
HNF-1A_C: domain 3 of 4, from 1459 to 1470: score 0.3, E = 13
*->vlTsDpeahtDq<-*
vlT D+ a +D+
gi|1720379 1459 VLTNDSDADGDS 1470
FecR: domain 5 of 6, from 1486 to 1507: score 1.8, E = 8.4
*->svtLpDGSLLsGrvtLnadSaldvdl<-*
+vtL+ G ++tLn+d + ++d+
gi|1720379 1486 QVTLASGA----LLTLNSDGSYSYDP 1507
Colipase: domain 9 of 10, from 1507 to 1518: score 4.2, E = 2.3
CS ----SSSB-TTS
*->PRGiiinLedGE<-*
P G++ nLedGE
gi|1720379 1507 PNGVFDNLEDGE 1518
PKD: domain 9 of 10, from 1527 to 1544: score 3.8, E = 1.2
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
tvs+g g +++ t+t+t+
gi|1720379 1527 TVSDGQGGTDTATATITI 1544
Extensin_1: domain 7 of 8, from 1550 to 1559: score 1.7, E = 21
*->ppvykPpvek<-*
ppv Ppv
gi|1720379 1550 PPVNTPPVAT 1559
HNF-1A_C: domain 4 of 4, from 1575 to 1586: score 0.3, E = 13
*->vlTsDpeahtDq<-*
vlT D+ a +D+
gi|1720379 1575 VLTNDSDADGDS 1586
FecR: domain 6 of 6, from 1602 to 1623: score 1.8, E = 8.4
*->svtLpDGSLLsGrvtLnadSaldvdl<-*
+vtL+ G ++tLn+d + ++d+
gi|1720379 1602 QVTLASGA----LLTLNSDGSYSYDP 1623
Colipase: domain 10 of 10, from 1623 to 1634: score 4.2, E = 2.3
CS ----SSSB-TTS
*->PRGiiinLedGE<-*
P G++ nLedGE
gi|1720379 1623 PNGVFDNLEDGE 1634
PKD: domain 10 of 10, from 1643 to 1660: score 3.8, E = 1.2
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
tvs+g g +++ t+t+t+
gi|1720379 1643 TVSDGQGGTDTATATITI 1660
Extensin_1: domain 8 of 8, from 1666 to 1675: score 1.7, E = 21
*->ppvykPpvek<-*
ppv Ppv
gi|1720379 1666 PPVNTPPVAT 1675
BAALC_N: domain 1 of 1, from 1696 to 1718: score 3.8, E = 2.2
*->tDsDAlPsaAAtDsGPEAGGLqA<-*
tD+D P A D GP G L
gi|1720379 1696 TDADGDPLSAIVDEGPSNGTLDF 1718
HemolysinCabind: domain 1 of 5, from 1770 to 1781: score 1.8, E = 23
CS E--SSS-EEEEE
*->yGGaGnDtLyGg<-*
+G+ GnDt + g
gi|1720379 1770 FGTVGNDTFDAG 1781
CRAM_rpt: domain 1 of 1, from 1776 to 1799: score 6.1, E = 0.08
*->eaDDCnitGDCnEtDDCditGDCn<-*
++ D +t D n tDD G n
gi|1720379 1776 DTFDAGVTPDFNGTDDIVFAGSGN 1799
HemolysinCabind: domain 2 of 5, from 1790 to 1802: score 6.6, E = 0.81
CS S-EEEEESSCGEE
*->nDtLyGgaGnDtl<-*
+D+ + g+GnD++
gi|1720379 1790 DDIVFAGSGNDLI 1802
HemolysinCabind: domain 3 of 5, from 1805 to 1822: score 15.4, E = 0.0016
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+ G G ++LyGg+GnDt+
gi|1720379 1805 TAGTGGNRLYGGSGNDTF 1822
HemolysinCabind: domain 4 of 5, from 1827 to 1839: score 5.5, E = 1.7
CS S-EEEEESSCGEE
*->nDtLyGgaGnDtl<-*
n++ +Gg+G+D++
gi|1720379 1827 NNRAFGGGGDDIF 1839
HemolysinCabind: domain 5 of 5, from 1840 to 1857: score 5.9, E = 1.3
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
y + +++++Gg G+D++
gi|1720379 1840 YLLGDRNVITGGTGADQF 1857
DHC: domain 1 of 1, from 1852 to 1859: score 0.8, E = 8.8
*->pgAekGnF<-*
+gA++++F
gi|1720379 1852 TGADQFWF 1859
//