hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 172037971.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|172037971|ref|YP_001804472.1|
Accession: [none]
Description: hypothetical protein cce_3058 [Cyanothece sp. ATCC 51142]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TSP_3 Thrombospondin type 3 repeat 8.3 0.27 1
Big_1 Bacterial Ig-like domain (group 1) 3.9 0.79 1
CIA30 Complex I intermediate-associated pro 3.8 0.84 1
BssS Biofilm regulator BssS 4.6 0.87 1
PLA1 Phospholipase A1 2.5 1.6 1
DUF2490 Protein of unknown function (DUF2490) 3.0 2.4 1
Dockerin_1 Dockerin type I repeat 4.5 3 1
CHRD CHRD domain 3.3 3.1 1
Ofd1_CTDD Oxoglutarate and iron-dependent oxyge 1.3 3.1 1
XisH XisH protein 1.8 3.7 1
Binary_toxB Clostridial binary toxin B/anthrax to 0.3 3.7 1
FG-GAP FG-GAP repeat 3.6 4.7 1
Acp26Ab Drosophila accessory gland-specific p 1.6 5.2 1
Chorismate_synt Chorismate synthase -0.3 5.8 1
TraE TraE protein 1.2 5.9 1
Gal4_dimer Gal4-like dimerisation domain 3.3 6.5 1
FlgD Flagellar hook capping protein 1.0 7.7 1
PET PET Domain 1.0 8.2 1
DUF1204 Protein of unknown function (DUF1204) 0.4 8.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
XisH 1/1 47 58 .. 126 137 .] 1.8 3.7
Acp26Ab 1/1 87 93 .. 84 90 .] 1.6 5.2
Chorismate_synt 1/1 118 130 .. 143 155 .. -0.3 5.8
FlgD 1/1 186 235 .. 95 155 .] 1.0 7.7
Big_1 1/1 219 236 .. 89 106 .] 3.9 0.79
CHRD 1/1 330 339 .. 122 131 .] 3.3 3.1
Gal4_dimer 1/1 368 384 .. 41 57 .] 3.3 6.5
CIA30 1/1 408 457 .. 1 46 [. 3.8 0.84
Binary_toxB 1/1 513 521 .. 1 9 [. 0.3 3.7
TSP_3 1/1 514 526 .. 1 15 [] 8.3 0.27
PET 1/1 529 545 .. 91 107 .] 1.0 8.2
PLA1 1/1 585 605 .. 1 21 [. 2.5 1.6
FG-GAP 1/1 662 678 .. 1 17 [. 3.6 4.7
Dockerin_1 1/1 670 678 .. 1 9 [. 4.5 3
DUF1204 1/1 697 711 .. 218 232 .] 0.4 8.6
TraE 1/1 698 706 .. 187 195 .] 1.2 5.9
Ofd1_CTDD 1/1 712 719 .. 1 8 [. 1.3 3.1
BssS 1/1 715 727 .. 1 13 [. 4.6 0.87
DUF2490 1/1 779 795 .. 186 202 .] 3.0 2.4
Alignments of top-scoring domains:
XisH: domain 1 of 1, from 47 to 58: score 1.8, E = 3.7
*->lvyDpekEeIlQ<-*
lv+Dp++ +I Q
gi|1720379 47 LVIDPQQDSIEQ 58
Acp26Ab: domain 1 of 1, from 87 to 93: score 1.6, E = 5.2
*->RqqLnmA<-*
RqqLn+A
gi|1720379 87 RQQLNLA 93
Chorismate_synt: domain 1 of 1, from 118 to 130: score -0.3, E = 5.8
CS HHHHHHHHHHHHH
*->RVAAGAiAKklLr<-*
RVAAG+i K +L+
gi|1720379 118 RVAAGTIGKQFLS 130
FlgD: domain 1 of 1, from 186 to 235: score 1.0, E = 7.7
*->eVlvpd.dgntivyldgggggetGsv.sggvevgLpsaAdevtvtik
+V+ + ++++ + +g+ v +++++ p +A++vtvt++
gi|1720379 186 TVRLEIpTTTL-IESQGTQ-----LVfRFRLS--EPPPANGVTVTLR 224
DaaGqvvnvelVrtid<-*
+ q +id
gi|1720379 225 GNVAQS-----LNQID 235
Big_1: domain 1 of 1, from 219 to 236: score 3.9, E = 0.79
CS EEEEET.TECEEEEEEEE
*->VtAslanngatsvdaktV<-*
Vt++l +n+a+s+++ V
gi|1720379 219 VTVTLRGNVAQSLNQIDV 236
CHRD: domain 1 of 1, from 330 to 339: score 3.3, E = 3.1
*->PeGEIRGqit<-*
P+GEI Gqi+
gi|1720379 330 PSGEIDGQIV 339
Gal4_dimer: domain 1 of 1, from 368 to 384: score 3.3, E = 6.5
CS HHHHHHHXX XSXSSSXX
*->keLLTGlfv.tdtVnklA<-*
ke LT fv+td Vn+lA
gi|1720379 368 KEGLT-VFVrTDRVNGLA 384
CIA30: domain 1 of 1, from 408 to 457: score 3.8, E = 0.84
*->fdFtqrqpeslddWravdDtvmGEGsStsnvailqispng.......
f+Ft ++++ +d ++dD v + G+ t++ ++++p+++ +++
gi|1720379 408 FTFTVTETTATLDLPILDDGVPE-GLETVS---FRVEPGDgyttdla 450
.gtalFs<-*
++ a+Fs
gi|1720379 451 tNQATFS 457
Binary_toxB: domain 1 of 1, from 513 to 521: score 0.3, E = 3.7
*->dlDtDnDgI<-*
lDtD+DgI
gi|1720379 513 GLDTDGDGI 521
TSP_3: domain 1 of 1, from 514 to 526: score 8.3, E = 0.27
CS --TT-SSS-..GGGS
*->eDsDnDgvgdnDaCd<-*
D+D+Dg+ D +
gi|1720379 514 LDTDGDGII--DVKP 526
PET: domain 1 of 1, from 529 to 545: score 1.0, E = 8.2
*->tqrkreaLGvGrvkeap<-*
+++ +eaL +Gr+ +a
gi|1720379 529 ENYQTEALNRGRPLFAQ 545
PLA1: domain 1 of 1, from 585 to 605: score 2.5, E = 1.6
*->eqtvqKvHstkedfgkiilam<-*
+ + qK ++ ++f++ +++
gi|1720379 585 TLNSQKAPDSQVVFASPLANN 605
FG-GAP: domain 1 of 1, from 662 to 678: score 3.6, E = 4.7
CS CCSCEEEC-TTSSSSSE
*->fgssvaagDlnGDGrpD<-*
++ +D+nGDG+ D
gi|1720379 662 EILDLRNADVNGDGIVD 678
Dockerin_1: domain 1 of 1, from 670 to 678: score 4.5, E = 3
CS -TT-SS--S
*->DvNgDGkVn<-*
DvNgDG V+
gi|1720379 670 DVNGDGIVD 678
DUF1204: domain 1 of 1, from 697 to 711: score 0.4, E = 8.6
*->vgqvevdDeiAdvde<-*
vg evdDe+ vd+
gi|1720379 697 VGFYEVDDETGQVDG 711
TraE: domain 1 of 1, from 698 to 706: score 1.2, E = 5.9
*->gFGevtkek<-*
gF+ev++e
gi|1720379 698 GFYEVDDET 706
Ofd1_CTDD: domain 1 of 1, from 712 to 719: score 1.3, E = 3.1
*->PQeGEeGY<-*
Q+GE+GY
gi|1720379 712 IQPGEPGY 719
BssS: domain 1 of 1, from 715 to 727: score 4.6, E = 0.87
*->eqsGaaadAirar<-*
++G+aa+Air+r
gi|1720379 715 GEPGYAAAAIRRR 727
DUF2490: domain 1 of 1, from 779 to 795: score 3.0, E = 2.4
*->finrsdtpdrsnhilgl<-*
f++r +pd++ hi+g+
gi|1720379 779 FDYRQANPDQVDHIIGI 795
//