hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 172063333.fa
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Query sequence: gi|172063333|ref|YP_001810984.1|
Accession: [none]
Description: FHA domain-containing protein [Burkholderia ambifaria MC40-6]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
LysM LysM domain 23.4 8.5e-06 1
Peptidase_M16_C Peptidase M16 inactive domain 8.9 0.05 2
DUF2390 Protein of unknown function (DUF2390) 8.1 0.052 1
DUF1013 Protein of unknown function (DUF1013) 6.1 0.061 1
PT PT repeat 8.5 0.13 2
SSV1_ORF_D-335 ORF D-335-like protein 6.5 0.17 1
DUF1974 Domain of unknown function (DUF1974) 3.9 0.22 1
Type_III_YscX Type III secretion system YscX (type_ 5.5 0.32 1
LR8 LR8 protein 5.3 0.52 1
DUF2125 Uncharacterized protein conserved in 1.9 0.7 1
PSCyt1 Planctomycete cytochrome C 3.7 1.4 1
PNPase Polyribonucleotide nucleotidyltransfe 2.0 1.4 1
Phage_tail_T Minor tail protein T 2.5 1.5 1
DUF1094 Protein of unknown function (DUF1094) 3.9 1.7 1
XPC-binding XPC-binding domain 4.7 1.8 1
GumN GumN protein 2.8 2 1
Chlam_PMP Chlamydia polymorphic membrane protei 6.2 2.2 1
Apidaecin Apidaecin 2.9 2.3 1
HyaE Hydrogenase-1 expression protein HyaE 2.3 2.4 1
ABM Antibiotic biosynthesis monooxygenase 4.4 2.6 1
EST1_DNA_bind Est1 DNA/RNA binding domain 3.1 2.8 1
Peptidase_C26 Peptidase C26 -1.9 2.8 1
DUF1112 Protein of unknown function (DUF1112) 1.9 2.9 1
Aminotran_4 Aminotransferase class IV 2.1 2.9 1
Opi1 Transcription factor Opi1 1.4 3 1
HTS Homoserine O-succinyltransferase -0.1 3.2 1
DUF438 Family of unknown function (DUF438) 2.4 3.2 1
MTP18 Mitochondrial 18 KDa protein (MTP18) 2.3 3.4 1
Hydrolase haloacid dehalogenase-like hydrolase 2.1 3.7 1
DUF2550 Protein of unknown function (DUF2550) 2.8 3.8 1
Ribonuc_2-5A Ribonuclease 2-5A 2.2 3.9 1
DUF1970 Domain of unknown function (DUF1970) 0.4 4 1
Methyltransf_11 Methyltransferase domain 3.2 4 2
CARD Caspase recruitment domain 3.2 4.3 1
Mu-transpos_C Mu transposase, C-terminal 3.2 4.3 1
Peptidase_M15 D-ala-D-ala dipeptidase 1.4 4.5 1
Glyco_hydro_79n Glycosyl hydrolase family 79, N-termi -0.1 4.6 1
Drf_FH3 Diaphanous FH3 Domain 0.8 4.6 1
Ribosomal_S3_N Ribosomal protein S3, N-terminal doma 2.2 4.7 1
AIRS_C AIR synthase related protein, C-termi 2.1 4.8 1
IPPT IPP transferase 1.8 4.9 1
EspF EspF protein repeat 1.4 4.9 1
DUF2164 Uncharacterized conserved protein (DU 3.0 4.9 1
DUF2190 Uncharacterized conserved protein (DU 2.1 5 1
Toxin_13 Neurotoxin B-IV-like protein 1.9 5.1 1
Cbl_N2 CBL proto-oncogene N-terminus, EF han 2.6 5.1 1
Not1 CCR4-Not complex component, Not1 0.7 5.1 1
MutS_IV MutS family domain IV 2.8 5.1 1
FTHFS Formate--tetrahydrofolate ligase -0.4 5.3 1
DUF2134 Predicted membrane protein (DUF2134) 1.9 5.4 1
Rgp1 Rgp1 0.4 5.5 1
EIAV_GP90 EIAV coat protein, gp90 -0.6 5.7 1
GerE Bacterial regulatory proteins, luxR f 3.0 5.8 1
Oxidored_nitro Nitrogenase component 1 type Oxidored -0.7 5.8 1
YjeF_N YjeF-related protein N-terminus 1.0 5.8 1
Transposase_Tc5 Tc5 transposase 0.5 5.8 1
Leader_Thr Threonine leader peptide 3.6 5.9 1
SRR1 SRR1 3.5 5.9 1
PhyH Phytanoyl-CoA dioxygenase (PhyH) 0.4 5.9 1
DUF952 Protein of unknown function (DUF952) 2.5 6.2 1
DUF526 Protein of unknown function (DUF526) 2.1 6.2 1
Type_III_YscP Type III secretion system (type_III_ 1.3 6.2 1
Peptidase_M4_C Thermolysin metallopeptidase, alpha-h 0.7 6.3 1
Plasmid_RAQPRD Plasmid protein of unknown function ( 1.2 6.5 1
DUF1990 Domain of unknown function (DUF1990) 1.4 6.7 1
CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISP 0.1 6.7 1
HisG ATP phosphoribosyltransferase 1.5 6.8 1
ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valin 0.6 6.8 1
DUF702 Domain of unknown function (DUF702) 0.5 6.8 1
Pas_Saposin Pas factor saposin fold 2.0 7 1
SUR7 SUR7 protein 1.0 7 1
DUF494 Protein of unknown function (DUF494) 0.8 7.1 1
DnaJ_C DnaJ C terminal region 1.8 7.1 1
CysG_dimeriser Sirohaem synthase dimerisation region 2.4 7.2 1
DUF2296 Predicted integral membrane metal-bin 2.2 7.2 1
PRCH Photosynthetic reaction centre, H-cha 0.8 7.2 1
tRNA-synt_2c tRNA synthetases class II (A) -0.3 7.3 1
Glyco_hydro_42M Beta-galactosidase trimerisation doma 0.5 7.3 1
DUF2036 Uncharacterized conserved protein (DU 0.6 7.6 1
APS_kinase Adenylylsulphate kinase 0.1 7.6 1
BRK BRK domain 2.6 7.6 1
Nha1_C Alkali metal cation/H+ antiporter Nha 1.0 7.7 1
DUF1175 Protein of unknown function (DUF1175) -0.1 7.9 1
Flagellin_N Bacterial flagellin N-terminus 1.6 8 1
DUF632 Protein of unknown function (DUF632) 0.1 8 1
RAG2 Recombination activating protein 2 -1.7 8.2 1
LEA_3 Late embryogenesis abundant protein 0.9 8.3 1
PEN-2 Presenilin enhancer-2 subunit of gamm 0.3 8.4 1
OpcA Outer membrane protein OpcA -0.7 8.4 1
Sipho_tail Siphovirus tail component protein -1.5 8.6 1
CMD Carboxymuconolactone decarboxylase fa 2.3 8.7 1
DUF151 Uncharacterised ACR, COG1259 1.2 8.8 1
Metallophos Calcineurin-like phosphoesterase 1.5 9 1
CPT Chloramphenicol phosphotransferase-li 0.2 9 1
NDUF_B8 NADH-ubiquinone oxidoreductase ASHI s -0.5 9.1 1
DUF2064 Uncharacterized protein conserved in 2.0 9.1 1
gpW gpW 1.6 9.2 1
Cytomega_TRL10 Cytomegalovirus TRL10 protein 0.3 9.2 1
Phage_attach Phage Head-Tail Attachment -1.1 9.3 1
Beta-lactamase Beta-lactamase 0.2 9.5 1
DUF1349 Protein of unknown function (DUF1349) 0.2 9.6 1
DUF1035 Protein of unknown function (DUF1035) 1.1 9.7 1
DUF1493 Protein of unknown function (DUF1493) 0.1 9.8 1
HTH_psq helix-turn-helix, Psq domain 2.4 9.9 1
DUF2029 Protein of unknown function (DUF2029) 0.6 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Plasmid_RAQPRD 1/1 31 47 .. 1 17 [. 1.2 6.5
Peptidase_M16_C 1/2 46 84 .. 158 198 .] 2.4 3.4
DUF1974 1/1 61 77 .. 114 130 .. 3.9 0.22
Phage_attach 1/1 61 76 .. 1 16 [. -1.1 9.3
DUF702 1/1 67 75 .. 161 169 .] 0.5 6.8
DUF1013 1/1 73 88 .. 127 143 .] 6.1 0.061
Toxin_13 1/1 84 100 .. 1 17 [. 1.9 5.1
DnaJ_C 1/1 97 105 .. 1 9 [. 1.8 7.1
CARD 1/1 205 229 .. 64 89 .] 3.2 4.3
APS_kinase 1/1 433 446 .. 149 162 .] 0.1 7.6
Phage_tail_T 1/1 452 458 .. 97 103 .] 2.5 1.5
DUF1493 1/1 527 534 .. 112 119 .] 0.1 9.8
Type_III_YscX 1/1 631 659 .. 80 114 .. 5.5 0.32
DUF1112 1/1 650 658 .. 230 238 .] 1.9 2.9
DUF2036 1/1 691 700 .. 1 10 [. 0.6 7.6
OpcA 1/1 719 739 .. 95 116 .. -0.7 8.4
DUF1035 1/1 801 816 .. 41 57 .. 1.1 9.7
DUF1990 1/1 877 908 .. 6 39 .. 1.4 6.7
SUR7 1/1 922 944 .. 188 210 .] 1.0 7
DUF2190 1/1 928 946 .. 87 107 .. 2.1 5
AIRS_C 1/1 971 1019 .. 1 62 [. 2.1 4.8
Cbl_N2 1/1 1072 1081 .. 77 86 .] 2.6 5.1
YjeF_N 1/1 1099 1109 .. 1 11 [. 1.0 5.8
Oxidored_nitro 1/1 1127 1137 .. 455 465 .] -0.7 5.8
ELFV_dehydrog 1/1 1131 1139 .. 270 278 .] 0.6 6.8
DUF1349 1/1 1175 1188 .. 168 181 .. 0.2 9.6
DUF2164 1/1 1275 1289 .. 62 81 .] 3.0 4.9
SSV1_ORF_D-335 1/1 1281 1294 .. 17 31 .. 6.5 0.17
CMD 1/1 1508 1538 .. 58 88 .] 2.3 8.7
DUF2064 1/1 1513 1555 .. 1 48 [. 2.0 9.1
Methyltransf_11 1/2 1530 1553 .. 1 28 [. 1.3 13
NDUF_B8 1/1 1612 1632 .. 1 21 [. -0.5 9.1
EIAV_GP90 1/1 1622 1633 .. 381 392 .] -0.6 5.7
gpW 1/1 1646 1653 .. 61 68 .] 1.6 9.2
LR8 1/1 1647 1657 .. 220 230 .] 5.3 0.52
DUF1175 1/1 1649 1658 .. 233 242 .] -0.1 7.9
XPC-binding 1/1 1705 1722 .. 35 59 .] 4.7 1.8
RAG2 1/1 1818 1835 .. 519 536 .] -1.7 8.2
Pas_Saposin 1/1 1830 1839 .. 67 76 .] 2.0 7
EspF 1/1 1902 1916 .. 33 47 .] 1.4 4.9
DUF151 1/1 1929 1939 .. 54 64 .. 1.2 8.8
HTS 1/1 1997 2003 .. 327 333 .] -0.1 3.2
DUF952 1/1 2011 2019 .. 1 9 [. 2.5 6.2
CysG_dimeriser 1/1 2014 2038 .. 40 64 .] 2.4 7.2
Ribosomal_S3_N 1/1 2038 2054 .. 50 71 .] 2.2 4.7
PSCyt1 1/1 2092 2100 .. 54 62 .] 3.7 1.4
CPT 1/1 2139 2151 .. 210 222 .] 0.2 9
PRCH 1/1 2164 2174 .. 135 145 .] 0.8 7.2
tRNA-synt_2c 1/1 2222 2233 .. 598 609 .] -0.3 7.3
Apidaecin 1/1 2251 2284 .. 1 28 [] 2.9 2.3
PT 1/2 2265 2287 .. 1 23 [. 2.5 7.3
Beta-lactamase 1/1 2312 2340 .. 1 35 [. 0.2 9.5
Methyltransf_11 2/2 2316 2336 .. 76 97 .. 1.9 9.2
DUF1094 1/1 2347 2363 .. 81 97 .] 3.9 1.7
Peptidase_M4_C 1/1 2356 2366 .. 157 167 .] 0.7 6.3
Rgp1 1/1 2369 2377 .. 564 572 .] 0.4 5.5
Peptidase_M15 1/1 2424 2446 .. 31 53 .. 1.4 4.5
Type_III_YscP 1/1 2467 2484 .. 1 25 [. 1.3 6.2
Glyco_hydro_79n 1/1 2630 2635 .. 351 356 .] -0.1 4.6
PNPase 1/1 2640 2646 .. 78 84 .] 2.0 1.4
Aminotran_4 1/1 2697 2718 .. 236 266 .] 2.1 2.9
BRK 1/1 2793 2816 .. 1 23 [. 2.6 7.6
HTH_psq 1/1 2842 2857 .. 32 48 .] 2.4 9.9
DUF2125 1/1 2851 2860 .. 356 365 .] 1.9 0.7
Not1 1/1 2901 2925 .. 391 415 .] 0.7 5.1
SRR1 1/1 2932 2948 .. 40 56 .] 3.5 5.9
DUF632 1/1 2939 2957 .. 329 347 .] 0.1 8
Chlam_PMP 1/1 2946 2969 .. 1 19 [] 6.2 2.2
Ribonuc_2-5A 1/1 2949 2963 .. 64 78 .. 2.2 3.9
Mu-transpos_C 1/1 2973 2985 .. 65 81 .] 3.2 4.3
IPPT 1/1 3000 3015 .. 248 264 .] 1.8 4.9
Peptidase_C26 1/1 3001 3014 .. 176 195 .. -1.9 2.8
DUF526 1/1 3053 3059 .. 64 70 .] 2.1 6.2
ABM 1/1 3064 3083 .. 44 65 .] 4.4 2.6
DUF2390 1/1 3067 3104 .. 38 75 .. 8.1 0.052
HyaE 1/1 3084 3095 .. 1 14 [. 2.3 2.4
MutS_IV 1/1 3091 3106 .. 1 16 [. 2.8 5.1
PhyH 1/1 3128 3158 .. 1 32 [. 0.4 5.9
LEA_3 1/1 3241 3246 .. 1 6 [. 0.9 8.3
FTHFS 1/1 3246 3256 .. 547 557 .. -0.4 5.3
Hydrolase 1/1 3247 3311 .. 95 169 .. 2.1 3.7
Opi1 1/1 3286 3296 .. 1 11 [. 1.4 3
DUF494 1/1 3301 3312 .. 146 157 .] 0.8 7.1
DUF2550 1/1 3334 3353 .. 117 136 .] 2.8 3.8
Cytomega_TRL10 1/1 3373 3380 .. 1 9 [. 0.3 9.2
Sipho_tail 1/1 3382 3389 .. 684 691 .] -1.5 8.6
Drf_FH3 1/1 3412 3425 .. 1 14 [. 0.8 4.6
Glyco_hydro_42M 1/1 3413 3428 .. 215 231 .] 0.5 7.3
DUF2029 1/1 3440 3460 .. 179 199 .. 0.6 10
EST1_DNA_bind 1/1 3464 3472 .. 67 75 .] 3.1 2.8
Peptidase_M16_C 2/2 3493 3520 .. 172 198 .] 6.5 0.24
DUF438 1/1 3504 3517 .. 42 56 .. 2.4 3.2
CRISPR_Cse1 1/1 3531 3546 .. 542 557 .] 0.1 6.7
PEN-2 1/1 3558 3581 .. 80 101 .] 0.3 8.4
Leader_Thr 1/1 3655 3673 .. 1 23 [] 3.6 5.9
MTP18 1/1 3716 3727 .. 176 187 .] 2.3 3.4
DUF2296 1/1 3718 3729 .. 1 12 [. 2.2 7.2
GumN 1/1 3729 3739 .. 276 286 .] 2.8 2
HisG 1/1 3779 3795 .. 171 189 .] 1.5 6.8
GerE 1/1 3869 3880 .. 47 58 .] 3.0 5.8
DUF1970 1/1 3874 3893 .. 98 117 .] 0.4 4
Transposase_Tc5 1/1 3921 3932 .. 1 13 [. 0.5 5.8
Nha1_C 1/1 3933 3938 .. 1 6 [. 1.0 7.7
DUF2134 1/1 3946 3963 .. 94 115 .] 1.9 5.4
Metallophos 1/1 3968 4082 .. 98 124 .] 1.5 9
PT 2/2 4029 4050 .. 1 23 [. 6.0 0.67
LysM 1/1 4054 4123 .] 1 45 [] 23.4 8.5e-06
Flagellin_N 1/1 4084 4094 .. 1 11 [. 1.6 8
Alignments of top-scoring domains:
Plasmid_RAQPRD: domain 1 of 1, from 31 to 47: score 1.2, E = 6.5
*->aaaAdaaaERerLaavl<-*
+a + ++E+++Laa++
gi|1720633 31 GAPPAQTPEQQALAAAQ 47
Peptidase_M16_C: domain 1 of 2, from 46 to 84: score 2.4, E = 3.4
CS E ECCCCHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHH
*->a.tdpegenldeRvlelileeleklaeeGiteeelerakaql<-*
a+++++ +l + + ++ +++l++l ++G ++++l++ +
gi|1720633 46 AqAETQ--RLLQ-LAQAEMATLKRLHDQGASQADLDKQVKKA 84
DUF1974: domain 1 of 1, from 61 to 77: score 3.9, E = 0.22
*->SAvLKRyeDeGrpeaDl<-*
+A+LKR +D+G +aDl
gi|1720633 61 MATLKRLHDQGASQADL 77
Phage_attach: domain 1 of 1, from 61 to 76: score -1.1, E = 9.3
*->MadfdNLFDeAisrAD<-*
Ma L D+ s+AD
gi|1720633 61 MATLKRLHDQGASQAD 76
DUF702: domain 1 of 1, from 67 to 75: score 0.5, E = 6.8
*->LYDQGpehq<-*
L+DQG ++
gi|1720633 67 LHDQGASQA 75
DUF1013: domain 1 of 1, from 73 to 88: score 6.1, E = 0.061
*->sQidLDaaVekkAakrr<-*
sQ+dLD+ V+k A+
gi|1720633 73 SQADLDKQVKK-AETAW 88
Toxin_13: domain 1 of 1, from 84 to 100: score 1.9, E = 5.1
CS --S--SSS-THHHHHHH
*->AsatWGaaYPACEnnCR<-*
A + WGa A En R
gi|1720633 84 AETAWGAVQAAVENQMR 100
DnaJ_C: domain 1 of 1, from 97 to 105: score 1.8, E = 7.1
*->qrlRlaGeG<-*
+++R+a+eG
gi|1720633 97 NQMRVAAEG 105
CARD: domain 1 of 1, from 205 to 229: score 3.2, E = 4.3
CS CCHHHHHHHHHHHTT-HHHHHHHHCC
*->peafqiFleaLretgqphLadllels<-*
++a+ ++ aLr+ ++ +a l+l+
gi|1720633 205 NNAYTALTTALRH-EYSTSAATLRLD 229
APS_kinase: domain 1 of 1, from 433 to 446: score 0.1, E = 7.6
CS SS-SEEEETTTS-H
*->enPElvldttkqsv<-*
++PE++l tkq v
gi|1720633 433 AAPEVRLQYTKQQV 446
Phage_tail_T: domain 1 of 1, from 452 to 458: score 2.5, E = 1.5
*->GPDSepg<-*
GPDS+pg
gi|1720633 452 GPDSNPG 458
DUF1493: domain 1 of 1, from 527 to 534: score 0.1, E = 9.8
*->KAGRWLYD<-*
KAG+W D
gi|1720633 527 KAGKWMQD 534
Type_III_YscX: domain 1 of 1, from 631 to 659: score 5.5, E = 0.32
*->ldtTlaRLrsLLqesgsseLqaAaeLLestqeDeR<-*
+d+ +r++L + +++L +A LL ++q D+R
gi|1720633 631 FDG----VRQALSSGVDPALSKA--LLSKMQNDDR 659
DUF1112: domain 1 of 1, from 650 to 658: score 1.9, E = 2.9
*->LLskLqsrD<-*
LLsk+q++D
gi|1720633 650 LLSKMQNDD 658
DUF2036: domain 1 of 1, from 691 to 700: score 0.6, E = 7.6
*->dYkLLELded<-*
+YkL+++d+d
gi|1720633 691 SYKLFQADPD 700
OpcA: domain 1 of 1, from 719 to 739: score -0.7, E = 8.4
CS EEEEEEEETTEEEEEEEEEEEE
*->YtYtqtLsDsLnFRvGAGLGle<-*
Yt+t t sD + vGAGLGl+
gi|1720633 719 YTFT-TGSDQMTNFVGAGLGLQ 739
DUF1035: domain 1 of 1, from 801 to 816: score 1.1, E = 9.7
*->vGssnAtivsLVplFYl<-*
vG + +vsLVp++Y+
gi|1720633 801 VGG-DHAVVSLVPIYYV 816
DUF1990: domain 1 of 1, from 877 to 908: score 1.4, E = 6.7
*->GatraegatpleedsdlvpsGyrildvrvrlGsG<-*
Gat g++ +e+ + ++++y++l++ v+ G+G
gi|1720633 877 GAT--GGYSQYESIDAHKTEWYQHLERYVEMGTG 908
SUR7: domain 1 of 1, from 922 to 944: score 1.0, E = 7
*->GikaslGtkmfAftWaAVaflLl<-*
Gi a +G +++++W+AV++ ++
gi|1720633 922 GIGAPVGGLLLGAAWTAVGAGMA 944
DUF2190: domain 1 of 1, from 928 to 946: score 2.1, E = 5
*->gNtliGvAwaaaAagsGaatv<-*
g+ l G+Aw+a++ag+ a++
gi|1720633 928 GGLLLGAAWTAVGAGM--AVG 946
AIRS_C: domain 1 of 1, from 971 to 1019: score 2.1, E = 4.8
CS STTSEEEEEECTT..BTT----TTSHHHHHTT---S--G.......G
*->kpGDvlillgsttkktGrsGlhGnglslvrklleesglpdsdepdrp
+ GD + l+gs+ G+ G+gl + k l+e+ ++ r
gi|1720633 971 ARGDWISLIGSG------AGIAGGGLGVAAKSLAEASSLL-----RT 1006
CS G....---HHHHHHH
avqgtlgdplleptl<-*
+q ++d+l + +
gi|1720633 1007 TGQ--VSDLLTVASR 1019
Cbl_N2: domain 1 of 1, from 1072 to 1081: score 2.6, E = 5.1
CS GHHHHHHHHC
*->tLlrNWqtLa<-*
+L++NW+ L
gi|1720633 1072 SLVKNWDALS 1081
YjeF_N: domain 1 of 1, from 1099 to 1109: score 1.0, E = 5.8
*->lGipglvLMEr<-*
+G+ +++LMEr
gi|1720633 1099 MGLGSHTLMER 1109
Oxidored_nitro: domain 1 of 1, from 1127 to 1137: score -0.7, E = 5.8
CS HHHHHHHHHHH
*->lareianains<-*
+a+++ana+++
gi|1720633 1127 VAFDVANAMFA 1137
ELFV_dehydrog: domain 1 of 1, from 1131 to 1139: score 0.6, E = 6.8
CS HHHHHHHCS
*->VAdAMkarG<-*
VA+AM a+G
gi|1720633 1131 VANAMFANG 1139
DUF1349: domain 1 of 1, from 1175 to 1188: score 0.2, E = 9.6
*->SPereGfkVtFsef<-*
+P ++G+ ++Fs++
gi|1720633 1175 APADKGLRARFSDW 1188
DUF2164: domain 1 of 1, from 1275 to 1289: score 3.0, E = 4.9
*->kledLDieieedlyeLEkKp<-*
+led +e+ +y+LE
gi|1720633 1275 RLED----VEYYVYALE-DA 1289
SSV1_ORF_D-335: domain 1 of 1, from 1281 to 1294: score 6.5, E = 0.17
*->YYVYkIEkDneGkvr<-*
YYVY +E eG+vr
gi|1720633 1281 YYVYALED-AEGNVR 1294
CMD: domain 1 of 1, from 1508 to 1538: score 2.3, E = 8.7
CS --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
*->vteeeiaealawaaayaggpaalaAlaaaee<-*
+++e++ae +++ +++ +p +l+A a
gi|1720633 1508 MSAEDLAEMVRQSGWDGKSPVILYACGAGSR 1538
DUF2064: domain 1 of 1, from 1513 to 1555: score 2.0, E = 9.1
*->Tlavaaalqaag..dvvlaysgdldgaaraadawalearkaaalggv
+++++++++++g+++v+l++ g++ + ++a+ + a++ gv
gi|1720633 1513 LAEMVRQSGWDGksPVILYACGAGSRVSPLAQLL-------ANVLGV 1552
lvy<-*
vy
gi|1720633 1553 DVY 1555
Methyltransf_11: domain 1 of 2, from 1530 to 1553: score 1.3, E = 13
*->LDvGcGtGllaraLarrvgpgarvtGvD<-*
L + cG G + +La++ a+v GvD
gi|1720633 1530 LYA-CGAGSRVSPLAQL---LANVLGVD 1553
NDUF_B8: domain 1 of 1, from 1612 to 1632: score -0.5, E = 9.1
*->daviraevlgVsflalkkriv<-*
avi ++ +V ++ + r v
gi|1720633 1612 LAVIDQGAHPVNWSGVAPRPV 1632
EIAV_GP90: domain 1 of 1, from 1622 to 1633: score -0.6, E = 5.7
*->vktsGitPLPis<-*
v+ sG+ P P+s
gi|1720633 1622 VNWSGVAPRPVS 1633
gpW: domain 1 of 1, from 1646 to 1653: score 1.6, E = 9.2
CS --------
*->RrPlGvrl<-*
R PlGv++
gi|1720633 1646 RVPLGVYV 1653
LR8: domain 1 of 1, from 1647 to 1657: score 5.3, E = 0.52
*->tsLglylrkmf<-*
++Lg+y+++m
gi|1720633 1647 VPLGVYVWRML 1657
DUF1175: domain 1 of 1, from 1649 to 1658: score -0.1, E = 7.9
*->LGVYRlnfLk<-*
LGVY ++ L+
gi|1720633 1649 LGVYVWRMLT 1658
XPC-binding: domain 1 of 1, from 1705 to 1722: score 4.7, E = 1.8
*->NPqLlqlIqqNqeeFlrLLnepaeg<-*
NP+Llq eF +L+++p+ g
gi|1720633 1705 NPELLQ-------EFADLIQAPVFG 1722
RAG2: domain 1 of 1, from 1818 to 1835: score -1.7, E = 8.2
*->tmkkltpaKKsFLRRLFe<-*
+m+ t a K F RRL e
gi|1720633 1818 IMNGKTIAPKEFARRLLE 1835
Pas_Saposin: domain 1 of 1, from 1830 to 1839: score 2.0, E = 7
*->avalLEdpey<-*
a++lLEdp y
gi|1720633 1830 ARRLLEDPAY 1839
EspF: domain 1 of 1, from 1902 to 1916: score 1.4, E = 4.9
*->PDvAqRLvqHLAEHG<-*
PDvA RL H+ E
gi|1720633 1902 PDVATRLYLHVPEAP 1916
DUF151: domain 1 of 1, from 1929 to 1939: score 1.2, E = 8.8
*->gvkfPRPLTHD<-*
g ++PRPL HD
gi|1720633 1929 GGPPPRPLAHD 1939
HTS: domain 1 of 1, from 1997 to 2003: score -0.1, E = 3.2
*->VYQeTPY<-*
VYQ TP
gi|1720633 1997 VYQPTPL 2003
DUF952: domain 1 of 1, from 2011 to 2019: score 2.5, E = 6.2
*->IataseWea<-*
I+ta+eW+a
gi|1720633 2011 IFTADEWAA 2019
CysG_dimeriser: domain 1 of 1, from 2014 to 2038: score 2.4, E = 7.2
*->aelvlaGdeeeAealleqaLagaaa<-*
a+ ++a +e+ Aea++++ L+g ++
gi|1720633 2014 ADEWAARTEQIAEAEADDSLSGKTE 2038
Ribosomal_S3_N: domain 1 of 1, from 2038 to 2054: score 2.2, E = 4.7
*->nknlknaSnegisrieIeRkid<-*
+k ++++ sr++ Rki+
gi|1720633 2038 EKIYPPT-----SRVYTDRKIA 2054
PSCyt1: domain 1 of 1, from 2092 to 2100: score 3.7, E = 1.4
*->ddgeMPPpd<-*
d+++MPP+d
gi|1720633 2092 DTLLMPPDD 2100
CPT: domain 1 of 1, from 2139 to 2151: score 0.2, E = 9
CS HHHHHHHHHTT--
*->peECArrIrerle<-*
p+E A+r++ +le
gi|1720633 2139 PDEVAERVAPHLE 2151
PRCH: domain 1 of 1, from 2164 to 2174: score 0.8, E = 7.2
CS SSBSEEETTT-
*->GhnKIkPlrva<-*
G nK Plrva
gi|1720633 2164 GSNKHDPLRVA 2174
tRNA-synt_2c: domain 1 of 1, from 2222 to 2233: score -0.3, E = 7.3
CS XXXXXXXXXXXX
*->GdtVtavvDedr<-*
G+ t++vD+dr
gi|1720633 2222 GTRLTGQVDRDR 2233
Apidaecin: domain 1 of 1, from 2251 to 2284: score 2.9, E = 2.3
*->lrakPEAEPG......nnRPvYiPqPRPPHPRlr<-*
l a P AEP ++++++ RP+ P PRP PR+
gi|1720633 2251 LPAGPHAEPAptttrtASRPIADPPPRPTVPRVA 2284
PT: domain 1 of 2, from 2265 to 2287: score 2.5, E = 7.3
CS --S--------SS-----SS-SS
*->qPTaqPTaqPTvqPTgqPtaqPT<-*
++++P a+P++ PT++ +a PT
gi|1720633 2265 RTASRPIADPPPRPTVPRVADPT 2287
Beta-lactamase: domain 1 of 1, from 2312 to 2340: score 0.2, E = 9.5
CS HHHHHHHHHH.HHHTTESEEEEEEEETTEEEEEEE
*->ldrlieelmaddveggipGvavavvrdGkvvvdag<-*
++ +++++++ + G a+ v++ G +v ++
gi|1720633 2312 FRTALADRPG------VIGDAARVTQPGGTVSQHW 2340
Methyltransf_11: domain 2 of 2, from 2316 to 2336: score 1.9, E = 9.2
*->laedperalrEiaRVLKPGGkl<-*
l +d++ ++ +aRV PGG++
gi|1720633 2316 L-ADRPGVIGDAARVTQPGGTV 2336
DUF1094: domain 1 of 1, from 2347 to 2363: score 3.9, E = 1.7
*->GreaeeIaanLteAFde<-*
G e+ ++++ ++AFd+
gi|1720633 2347 GLEPTRVIDDVMQAFDA 2363
Peptidase_M4_C: domain 1 of 1, from 2356 to 2366: score 0.7, E = 6.3
CS HHHHHHHHTT-
*->dVkqAfsaVGV<-*
dV qAf+a+G
gi|1720633 2356 DVMQAFDAAGL 2366
Rgp1: domain 1 of 1, from 2369 to 2377: score 0.4, E = 5.5
*->LrFeFVtss<-*
Lr+eFVt++
gi|1720633 2369 LRVEFVTHD 2377
Peptidase_M15: domain 1 of 1, from 2424 to 2446: score 1.4, E = 4.5
CS --TTB-SSS-EEEHHHHHHHHHH
*->PvdlyqvaRcLvhkeaaeaLaka<-*
P +l+++aR+++h e+ aL +a
gi|1720633 2424 PLALPEGARTVAHDELGQALDAA 2446
Type_III_YscP: domain 1 of 1, from 2467 to 2484: score 1.3, E = 6.2
*->tqGDllsPLHEPRYLagmeAastaq<-*
+qGDl+ + +++A++ta+
gi|1720633 2467 AQGDLT-------PQERVAASATAN 2484
Glyco_hydro_79n: domain 1 of 1, from 2630 to 2635: score -0.1, E = 4.6
*->YLDqLG<-*
+LD+LG
gi|1720633 2630 WLDTLG 2635
PNPase: domain 1 of 1, from 2640 to 2646: score 2.0, E = 1.4
CS B-TTS-B
*->pRIDGRe<-*
+R+DGR+
gi|1720633 2640 TRVDGRH 2646
Aminotran_4: domain 1 of 1, from 2697 to 2718: score 2.1, E = 2.9
CS EEEEC.TCE.CT..TTSS-HHH.HHHHHHHH
*->PVveidDgrlpifeGdGkpGpvdtrrLqely<-*
PV+ + Dg+ ++ p ++ t++L +
gi|1720633 2697 PVRML-DGK-RV------PPAL-TKALENAG 2718
BRK: domain 1 of 1, from 2793 to 2816: score 2.6, E = 7.6
*->sldgeeR.VpVinrktGkrLtGde<-*
++ge R ++V+ +tGk+L+++e
gi|1720633 2793 AVSGEQRwIHVVDDETGKVLGYAE 2816
HTH_psq: domain 1 of 1, from 2842 to 2857: score 2.4, E = 9.9
*->rSTLwlrrlrggyslkr<-*
r+ ++ rr+rgg+++ r
gi|1720633 2842 RTVFR-RRRRGGIPVGR 2857
DUF2125: domain 1 of 1, from 2851 to 2860: score 1.9, E = 0.7
*->GpiPLGqiPp<-*
G iP+G+ P+
gi|1720633 2851 GGIPVGRSPR 2860
Not1: domain 1 of 1, from 2901 to 2925: score 0.7, E = 5.1
*->LFqsvakycmglkssqqvmqsegae<-*
LFqs++ +l+ +++++ +a+
gi|1720633 2901 LFQSIVPVRRPLSRAEEGDDANAAN 2925
SRR1: domain 1 of 1, from 2932 to 2948: score 3.5, E = 5.9
*->YDPvFnalekefleelG<-*
+DP + +++k++l+ ++
gi|1720633 2932 VDPHLLPSDKSALNAVD 2948
DUF632: domain 1 of 1, from 2939 to 2957: score 0.1, E = 8
*->pdkevleAIksFasvvhai<-*
+dk +l+A++ ++v ++
gi|1720633 2939 SDKSALNAVDFSGNSVSHL 2957
Chlam_PMP: domain 1 of 1, from 2946 to 2969: score 6.2, E = 2.2
*->ditFsgNsa.....aggGGAiyas<-*
+++FsgNs+++ +a ++GA+ +
gi|1720633 2946 AVDFSGNSVshllsAIRNGALDGG 2969
Ribonuc_2-5A: domain 1 of 1, from 2949 to 2963: score 2.2, E = 3.9
*->YkgsSvrDLLRaiRN<-*
++g+Sv +LL aiRN
gi|1720633 2949 FSGNSVSHLLSAIRN 2963
Mu-transpos_C: domain 1 of 1, from 2973 to 2985: score 3.2, E = 4.3
*->VlVyrqdGNeerflceA<-*
++V+r dG ++eA
gi|1720633 2973 IYVFRTDG----AVAEA 2985
IPPT: domain 1 of 1, from 3000 to 3015: score 1.8, E = 4.9
*->lTWFRkdsqPvhWldig<-*
++WF k++q v++l+
gi|1720633 3000 MRWFDKIPQ-VNNLHHR 3015
Peptidase_C26: domain 1 of 1, from 3001 to 3014: score -1.9, E = 2.8
CS TS-HHHHHHHS.--EEEEEE
*->rllelLglaeeeieVNSlHh<-*
r++ + ++VN+lHh
gi|1720633 3001 RWF---D--KI-PQVNNLHH 3014
DUF526: domain 1 of 1, from 3053 to 3059: score 2.1, E = 6.2
*->RlaaLEa<-*
R+aaLEa
gi|1720633 3053 RVAALEA 3059
ABM: domain 1 of 1, from 3064 to 3083: score 4.4, E = 2.6
CS EEEEESSHHHHHHHHTSHHHHH
*->ilevWedeaAfeahlqsphfka<-*
++ +W+d++A + l+s+ f+a
gi|1720633 3064 LHDQWKDAEA--RSLNSAPFRA 3083
DUF2390: domain 1 of 1, from 3067 to 3104: score 8.1, E = 0.052
*->lWLaqrGlaldaerlqaLqaaaepWreevvqPLRalRr<-*
+W +++ ++l+ + ++aL a++++ +ev++ LR+lRr
gi|1720633 3067 QWKDAEARSLNSAPFRALAARTRHGYNEVLGDLRRLRR 3104
HyaE: domain 1 of 1, from 3084 to 3095: score 2.3, E = 2.4
*->LiqRLltrfGwpvV<-*
L++R tr+G+++V
gi|1720633 3084 LAAR--TRHGYNEV 3095
MutS_IV: domain 1 of 1, from 3091 to 3106: score 2.8, E = 5.1
*->gfdeeLDelrdlleel<-*
g++e L lr+l++++
gi|1720633 3091 GYNEVLGDLRRLRRNG 3106
PhyH: domain 1 of 1, from 3128 to 3158: score 0.4, E = 5.9
CS HHHHHHSEEEETT..-S-H HHHHHHHHHHHHH
*->affredGylviegErflsp.eevaalraeaerl<-*
+f ++G++ e ++ +e+++a+++ a+r+
gi|1720633 3128 QFGLRNGAAKPEQ--YFAThEQIEAYNKQAQRP 3158
LEA_3: domain 1 of 1, from 3241 to 3246: score 0.9, E = 8.3
*->MARSls<-*
MARS+s
gi|1720633 3241 MARSFS 3246
FTHFS: domain 1 of 1, from 3246 to 3256: score -0.4, E = 5.3
*->SlSdDPkllGa<-*
SlSdDP+l Ga
gi|1720633 3246 SLSDDPALMGA 3256
Hydrolase: domain 1 of 1, from 3247 to 3311: score 2.1, E = 3.7
CS EESSEH HHHHHHHHTTHG GTSEEEECHHHTEEGSTTSTTTSHHHH
*->lTggdr.naeallealgla.lfdvivdsdevggvgpivvgKPkpeif
l++++ + + + ++ g+ + + ++d + ++ ++ gK ++ f
gi|1720633 3247 LSDDPAlMGALVERYGGVMpVVTLVIDPHSLA---AVL-GKAHDPDF 3289
CS HHHHHHHTSSGGGE.....EEEESSCHHHH
llalerlgvkpeevakpevlmVGDgvnDap<-*
l+a+++lg + +++ Dg+n+++
gi|1720633 3290 LRAVRALGDQKN-------AVF-DGANGMI 3311
Opi1: domain 1 of 1, from 3286 to 3296: score 1.4, E = 3
*->DvdvlraaSaL<-*
D+d+lra+ aL
gi|1720633 3286 DPDFLRAVRAL 3296
DUF494: domain 1 of 1, from 3301 to 3312: score 0.8, E = 7.1
*->eLlFdeeegllH<-*
+ +Fd ++g++H
gi|1720633 3301 NAVFDGANGMIH 3312
DUF2550: domain 1 of 1, from 3334 to 3353: score 2.8, E = 3.8
*->mdpdAlTGFlSWLESaPpgr<-*
+d++A TGF LE aP++
gi|1720633 3334 LDEAARTGFAIRLETAPSRA 3353
Cytomega_TRL10: domain 1 of 1, from 3373 to 3380: score 0.3, E = 9.2
*->mYprvmhav<-*
Y+rvm+a+
gi|1720633 3373 -YVRVMSAL 3380
Sipho_tail: domain 1 of 1, from 3382 to 3389: score -1.5, E = 8.6
*->sWntkpPd<-*
sW++++Pd
gi|1720633 3382 SWSNAHPD 3389
Drf_FH3: domain 1 of 1, from 3412 to 3425: score 0.8, E = 4.6
CS THHHHHHHHHHHHH
*->gGhelvleaiinfk<-*
gGhe++l+a+++ k
gi|1720633 3412 GGHEKLLRAVLERK 3425
Glyco_hydro_42M: domain 1 of 1, from 3413 to 3428: score 0.5, E = 7.3
CS HHHHHHHHHHHH.TT--
*->fldallekllaevagle<-*
++++ll+++l++ +gle
gi|1720633 3413 GHEKLLRAVLER-KGLE 3428
DUF2029: domain 1 of 1, from 3440 to 3460: score 0.6, E = 10
*->plafagNQSlrGvLaRLgged<-*
+++f+gNQ l+G+La L +e+
gi|1720633 3440 GADFVGNQDLTGALAKLIVEN 3460
EST1_DNA_bind: domain 1 of 1, from 3464 to 3472: score 3.1, E = 2.8
*->edipDrLvG<-*
+di++rL+G
gi|1720633 3464 PDIINRLHG 3472
Peptidase_M16_C: domain 2 of 2, from 3493 to 3520: score 6.5, E = 0.24
CS HHHHHHHHHHHHT T-SHHHHHHHHHHH
*->elileeleklaee.Giteeelerakaql<-*
+l+++e+e++ +G+t++e++++++ +
gi|1720633 3493 QLLFAEVERIGIAdGMTPAEVAALRQKI 3520
DUF438: domain 1 of 1, from 3504 to 3517: score 2.4, E = 3.2
*->iaeGgmppeEiqkLC<-*
ia+G m+p+E++ L+
gi|1720633 3504 IADG-MTPAEVAALR 3517
CRISPR_Cse1: domain 1 of 1, from 3531 to 3546: score 0.1, E = 6.7
*->tArkalrrlAlrlFda<-*
+Arka ++A +l++a
gi|1720633 3531 QARKATIEHATQLWEA 3546
PEN-2: domain 1 of 1, from 3558 to 3581: score 0.3, E = 8.4
*->GeRleWgatgDllsFiiPDk..LG<-*
G R+++g + D+ ++PD+ ++G
gi|1720633 3558 GARTFGGRWLDAYGGNVPDRvtTG 3581
Leader_Thr: domain 1 of 1, from 3655 to 3673: score 3.6, E = 5.9
*->mkrislnttiittieittGyGAG<-*
+ri+ i+ + t G GAG
gi|1720633 3655 -RRIA--GDITAATF-TGGAGAG 3673
MTP18: domain 1 of 1, from 3716 to 3727: score 2.3, E = 3.4
*->pypFDepVEeav<-*
p +FD+ V+++v
gi|1720633 3716 PRVFDRVVDRLV 3727
DUF2296: domain 1 of 1, from 3718 to 3729: score 2.2, E = 7.2
*->wyDRilDiLvGe<-*
++DR++D Lv++
gi|1720633 3718 VFDRVVDRLVRG 3729
GumN: domain 1 of 1, from 3729 to 3739: score 2.8, E = 2
*->GvldlLRarGy<-*
G++++L+a G+
gi|1720633 3729 GLQAQLKANGF 3739
HisG: domain 1 of 1, from 3779 to 3795: score 1.5, E = 6.8
CS HCHH.HHHHHHHHHHHHCH
*->ekedlelidelvtrLegVi<-*
++++ + ++++++++gV+
gi|1720633 3779 HTKA--IAADMLAQMQGVV 3795
GerE: domain 1 of 1, from 3869 to 3880: score 3.0, E = 5.8
CS T-SSHHHHHHHH
*->nvhsrvelirla<-*
n+ +r +l+r a
gi|1720633 3869 NAENRSQLARIA 3880
DUF1970: domain 1 of 1, from 3874 to 3893: score 0.4, E = 4
*->sqLnnYAesLnDYLAsqAGv<-*
sqL A++ DYL s +
gi|1720633 3874 SQLARIASATGDYLTSAVSI 3893
Transposase_Tc5: domain 1 of 1, from 3921 to 3932: score 0.5, E = 5.8
*->ifeLrkkFPdplp<-*
+ L+ +FP+ +p
gi|1720633 3921 -GRLHSHFPNATP 3932
Nha1_C: domain 1 of 1, from 3933 to 3938: score 1.0, E = 7.7
*->WMqRLP<-*
WM+RLP
gi|1720633 3933 WMERLP 3938
DUF2134: domain 1 of 1, from 3946 to 3963: score 1.9, E = 5.4
*->agilGilfGlppsrtlsAtAtA<-*
++i+Gi+ ++ +l ++AtA
gi|1720633 3946 VAIFGIM----QGINLYTSATA 3963
Metallophos: domain 1 of 1, from 3968 to 4082: score 1.5, E = 9
CS SSSSSCC
*->Hgplsps........................................
H p+ +s+ +++++ + + ++ + ++++ + ++ + + ++++
gi|1720633 3968 HKPPGSSpqpsgsnagtpapdasfapspsatsapsqptasaapspsa 4014
CS HHH
...............................................lee
+ +++ + + + +++ ++ + + +++++ + + + +++l+
gi|1720633 4015 saspsasatstagaqpssapsqptqaptnspsptptpltvnvvagdsLWT 4064
CS HHH TTSSEEEEESSSSE
llk.ngvdlvirGHtHvp<-*
++++++ l++++H+ +
gi|1720633 4065 IAErHEGSLLAAAHVPAD 4082
PT: domain 2 of 2, from 4029 to 4050: score 6.0, E = 0.67
CS --S--------SS-----SS-SS
*->qPTaqPTaqPTvqPTgqPtaqPT<-*
qP+++P +qPT++PT+ P++ PT
gi|1720633 4029 QPSSAP-SQPTQAPTNSPSPTPT 4050
LysM: domain 1 of 1, from 4054 to 4123: score 23.4, E = 8.5e-06
CS EE--TT--HHHHHHHT TS-IIII
*->YtVkkGDTLwsIArry........................gvsvseL
+ V GD+Lw IA r++++ + + +++++ +++++ +v ++e+
gi|1720633 4054 VNVVAGDSLWTIAERHegsllaaahvpadeqqrmsdgqriNVALNEI 4100
CS IITS-TT-SS. .--TT-EEEET
aelNpgLsspn.tlyvGQvLkiP<-*
++lN++L+++ +++ +GQ+ ++
gi|1720633 4101 LQLNRNLAGNPgEIAPGQQVIVG 4123
Flagellin_N: domain 1 of 1, from 4084 to 4094: score 1.6, E = 8
CS HHHHTS--TTT
*->qeRLSSGlRIN<-*
q+R+S G RIN
gi|1720633 4084 QQRMSDGQRIN 4094
//