hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 182416058.fa
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Query sequence: gi|182416058|ref|YP_001821124.1|
Accession: [none]
Description: Ig family protein [Opitutus terrae PB90-1]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
BNR BNR/Asp-box repeat 49.0 1.7e-13 6
He_PIG Putative Ig domain 48.1 7e-13 5
Mo-co_dimer Mo-co oxidoreductase dimerisation dom 11.0 0.0077 3
Big_1 Bacterial Ig-like domain (group 1) 6.5 0.12 4
NPCBM NPCBM/NEW2 domain 5.3 0.26 2
Flagellin_IN Flagellin hook IN motif 7.6 0.27 3
Fimbrial_K88 Fimbrial, major and minor subunit 5.1 0.39 1
FlaE Flagellar basal body protein FlaE 5.3 0.46 1
RBDV_coat Raspberry bushy dwarf virus coat prot 3.2 0.46 1
FG-GAP FG-GAP repeat 6.8 0.55 2
Big_2 Bacterial Ig-like domain (group 2) 5.3 0.75 2
RRF Ribosome recycling factor 4.2 1.1 1
tRNA-synt_2c tRNA synthetases class II (A) 2.5 1.2 1
Miro Miro-like protein 3.8 1.5 3
Semialdhyde_dh Semialdehyde dehydrogenase, NAD bindi 3.4 1.5 1
Fil_haemagg Haemagluttinin repeat 4.2 1.8 4
StbA StbA protein 2.6 1.8 1
Xlink Extracellular link domain 0.3 1.8 1
DUF196 Uncharacterized ACR, COG1343 3.7 2 1
CoA_trans Coenzyme A transferase 2.6 2.3 1
Gemini_mov Geminivirus putative movement protein 2.6 2.4 1
EFP_N Elongation factor P (EF-P) KOW-like d 4.2 2.5 2
F5_F8_type_C F5/8 type C domain 2.9 2.5 1
Ribosomal_S11 Ribosomal protein S11 1.9 2.7 1
Phage_tail_3 Phage tail protein 2.8 2.8 1
DUF1512 Protein of unknown function (DUF1512) -0.2 2.9 1
DUF1201 Protein of unknown function (DUF1201) 3.2 3.1 1
Chlam_PMP Chlamydia polymorphic membrane protei 5.5 3.3 3
MucBP MucBP domain 3.5 3.3 2
Lipoprotein_6 Lipoprotein 1.4 3.3 1
BiPBP_C Penicillin-Binding Protein C-terminus 2.8 3.4 1
Pardaxin Pardaxin 3.1 3.6 1
OMP_19 Bacterial outer membrane lipoprotein 2.6 3.7 1
Tymo_coat Tymovirus coat protein 2.4 3.7 3
HTH_11 HTH domain 4.3 3.7 1
DUF1120 Protein of unknown function (DUF1120) 1.6 4.2 1
PFL Pyruvate formate lyase -0.6 4.2 1
PKD PKD domain 2.0 4.5 2
Myosin_N Myosin N-terminal SH3-like domain 3.5 4.9 1
PIG-P PIG-P 1.2 5.3 1
DUF1708 Domain of unknown function (DUF1708) -0.3 5.6 1
SSI Subtilisin inhibitor-like 1.2 6 1
NLPC_P60 NlpC/P60 family 1.4 6 1
TIR-like Predicted nucleotide-binding protein 1.7 6.2 3
Triadin Triadin -0.2 6.4 1
HPP HPP family 1.8 6.4 1
Ago_hook Argonaute hook 2.6 6.4 1
DUF1775 Domain of unkown function (DUF1775) 0.8 7.7 1
FMN_red NADPH-dependent FMN reductase 0.9 7.7 1
HI0933_like HI0933-like protein -0.1 7.8 1
CHB_HEX_C Chitobiase/beta-hexosaminidase C-term 2.4 7.8 1
DUF291 Domain of unknown function 2.5 7.9 3
Flagellin_C Bacterial flagellin C-terminus 2.3 8.1 1
ThiF ThiF family 1.3 8.1 1
DUF1865 Domain of unknown function (DUF1865) 0.9 8.2 1
TRAP-gamma Translocon-associated protein, gamma -0.5 8.4 1
Hexapep Bacterial transferase hexapeptide (th 3.5 8.5 1
RE_XamI XamI restriction endonuclease -0.2 8.6 1
Malate_synthase Malate synthase -1.0 8.6 1
JmjC JmjC domain 1.0 8.8 1
DUF853 Bacterial protein of unknown function -1.5 9.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HPP 1/1 48 70 .. 1 26 [. 1.8 6.4
DUF1512 1/1 224 231 .. 367 374 .] -0.2 2.9
Chlam_PMP 1/3 232 268 .. 1 19 [] 0.2 92
Phage_tail_3 1/1 232 244 .. 156 168 .] 2.8 2.8
CoA_trans 1/1 241 257 .. 1 17 [. 2.6 2.3
Chlam_PMP 2/3 329 362 .. 1 19 [] 1.2 48
DUF1120 1/1 453 472 .. 137 156 .] 1.6 4.2
Chlam_PMP 3/3 461 479 .. 1 19 [] 4.1 8
Flagellin_IN 1/3 484 507 .. 36 63 .] 1.6 14
TRAP-gamma 1/1 540 552 .. 160 172 .] -0.5 8.4
ThiF 1/1 556 570 .. 1 15 [. 1.3 8.1
Miro 1/3 559 569 .. 1 11 [. 2.5 3.6
Semialdhyde_dh 1/1 559 571 .. 1 13 [. 3.4 1.5
Miro 2/3 670 680 .. 1 11 [. 0.7 12
tRNA-synt_2c 1/1 681 697 .. 593 609 .] 2.5 1.2
Big_1 1/4 749 778 .. 77 106 .] 0.8 7.7
Miro 3/3 782 792 .. 1 11 [. 0.7 12
EFP_N 1/2 795 801 .. 55 61 .] 2.1 9.7
EFP_N 2/2 907 913 .. 55 61 .] 2.1 9.7
FlaE 1/1 933 1048 .. 27 80 .. 5.3 0.46
Tymo_coat 1/3 1024 1034 .. 166 176 .] 0.8 10
CHB_HEX_C 1/1 1031 1055 .. 11 36 .. 2.4 7.8
PFL 1/1 1032 1040 .. 723 731 .] -0.6 4.2
DUF1865 1/1 1033 1061 .. 38 66 .. 0.9 8.2
FMN_red 1/1 1035 1083 .. 145 193 .] 0.9 7.7
NLPC_P60 1/1 1038 1062 .. 108 141 .] 1.4 6
PKD 1/2 1042 1060 .. 73 92 .] 1.4 6.6
Mo-co_dimer 1/3 1043 1056 .. 50 63 .. 1.6 4.2
BNR 1/6 1044 1055 .. 1 12 [] 12.1 0.026
Tymo_coat 2/3 1128 1138 .. 166 176 .] 0.8 10
Flagellin_C 1/1 1138 1148 .. 62 72 .] 2.3 8.1
PKD 2/2 1147 1164 .. 74 92 .] 0.5 12
StbA 1/1 1147 1156 .. 1 10 [. 2.6 1.8
BNR 2/6 1148 1159 .. 1 12 [] 10.5 0.074
Mo-co_dimer 2/3 1149 1160 .. 52 63 .. 1.3 5.1
Big_1 2/4 1236 1268 .. 74 106 .] 3.2 1.3
TIR-like 1/3 1250 1261 .. 114 125 .] 0.6 13
BNR 3/6 1252 1263 .. 1 12 [] 5.2 3.1
Big_2 1/2 1267 1292 .. 1 28 [. 3.2 3.1
He_PIG 1/5 1272 1295 .. 36 61 .] 1.9 9.7
Big_1 3/4 1343 1372 .. 77 106 .] 1.4 5.1
Fil_haemagg 1/4 1354 1407 .. 1 68 [. 0.9 16
TIR-like 2/3 1354 1365 .. 114 125 .] 0.6 13
BNR 4/6 1356 1367 .. 1 12 [] 6.5 1.3
DUF291 1/3 1375 1386 .. 21 32 .. 1.0 20
He_PIG 2/5 1376 1399 .. 36 61 .] 0.8 19
NPCBM 1/2 1381 1397 .. 139 156 .. 2.7 1.7
Big_1 4/4 1447 1472 .. 77 106 .] 1.0 6.6
Fil_haemagg 2/4 1458 1511 .. 1 68 [. 0.8 17
TIR-like 3/3 1458 1469 .. 114 125 .] 0.6 13
BNR 5/6 1460 1471 .. 1 12 [] 6.5 1.3
DUF291 2/3 1479 1490 .. 21 32 .. 1.0 20
He_PIG 3/5 1480 1503 .. 36 61 .] 0.8 19
NPCBM 2/2 1485 1501 .. 139 156 .. 2.7 1.7
Tymo_coat 3/3 1544 1554 .. 166 176 .] 0.8 10
F5_F8_type_C 1/1 1563 1619 .. 93 162 .] 2.9 2.5
Mo-co_dimer 3/3 1563 1576 .. 50 63 .. 8.0 0.057
BNR 6/6 1564 1575 .. 1 12 [] 8.3 0.36
Big_2 2/2 1620 1647 .. 1 26 [. 2.1 6.2
FG-GAP 1/2 1688 1703 .. 1 16 [. 2.4 10
Myosin_N 1/1 1712 1739 .. 16 44 .] 3.5 4.9
BiPBP_C 1/1 1713 1726 .. 80 94 .] 2.8 3.4
DUF291 3/3 1718 1726 .. 82 92 .] 0.5 27
Flagellin_IN 2/3 1723 1741 .. 1 24 [. 4.8 1.7
JmjC 1/1 1753 1771 .. 108 126 .] 1.0 8.8
Flagellin_IN 3/3 1770 1795 .. 1 31 [. 1.2 18
Xlink 1/1 1785 1799 .. 30 44 .. 0.3 1.8
FG-GAP 2/2 1807 1822 .. 1 16 [. 4.3 2.8
Malate_synthase 1/1 1882 1900 .. 1 19 [. -1.0 8.6
MucBP 1/2 1886 1915 .. 81 108 .] 1.6 11
Fil_haemagg 3/4 1929 1953 .. 1 29 [. 1.7 9.2
HI0933_like 1/1 1956 1964 .. 406 414 .] -0.1 7.8
DUF196 1/1 2032 2048 .. 1 15 [. 3.7 2
DUF1775 1/1 2088 2104 .. 1 19 [. 0.8 7.7
Lipoprotein_6 1/1 2105 2125 .. 201 220 .] 1.4 3.3
OMP_19 1/1 2111 2122 .. 180 191 .] 2.6 3.7
Fil_haemagg 4/4 2123 2180 .. 1 56 [. 0.8 17
DUF1708 1/1 2183 2190 .. 508 515 .] -0.3 5.6
He_PIG 4/5 2251 2265 .. 48 61 .] 1.5 12
He_PIG 5/5 2266 2306 .. 1 61 [] 43.1 1.9e-11
Ago_hook 1/1 2287 2312 .. 7 32 .. 2.6 6.4
RBDV_coat 1/1 2306 2316 .. 264 274 .] 3.2 0.46
SSI 1/1 2311 2325 .. 1 20 [. 1.2 6
Triadin 1/1 2360 2376 .. 1 17 [. -0.2 6.4
MucBP 2/2 2409 2436 .. 83 108 .] 1.9 8.8
Fimbrial_K88 1/1 2419 2428 .. 264 273 .] 5.1 0.39
Pardaxin 1/1 2477 2493 .. 17 33 .] 3.1 3.6
DUF1201 1/1 2565 2588 .. 31 54 .] 3.2 3.1
Gemini_mov 1/1 2612 2626 .. 1 17 [. 2.6 2.4
PIG-P 1/1 2656 2666 .. 143 153 .] 1.2 5.3
HTH_11 1/1 2680 2693 .. 49 62 .] 4.3 3.7
RRF 1/1 2684 2698 .. 1 15 [. 4.2 1.1
RE_XamI 1/1 2694 2709 .. 259 274 .] -0.2 8.6
Ribosomal_S11 1/1 2695 2703 .. 1 9 [. 1.9 2.7
DUF853 1/1 2764 2781 .. 1 18 [. -1.5 9.3
Hexapep 1/1 2785 2802 .] 1 18 [] 3.5 8.5
Alignments of top-scoring domains:
HPP: domain 1 of 1, from 48 to 70: score 1.8, E = 6.4
*->lgiiavltaitlVFRvaLLaAPlGAS<-*
l+ i++ +a ++ + +LaAP GA+
gi|1824160 48 LFFIDAAVADPN---AFWLAAPRGAT 70
DUF1512: domain 1 of 1, from 224 to 231: score -0.2, E = 2.9
*->GNTVGVpq<-*
GNT GV++
gi|1824160 224 GNTDGVAD 231
Chlam_PMP: domain 1 of 3, from 232 to 268: score 0.2, E = 92
*->ditFsgNsa..................aggGGAiyas<-*
+it++gN++ + + + +++++ + GG++ s
gi|1824160 232 TITLTGNITfasaadaiainvtdgqtmSIVGGGFTLS 268
Phage_tail_3: domain 1 of 1, from 232 to 244: score 2.8, E = 2.8
*->tlSlrgrpTryaa<-*
t++l+g T+++a
gi|1824160 232 TITLTGNITFASA 244
CoA_trans: domain 1 of 1, from 241 to 257: score 2.6, E = 2.3
CS CCHHHHHHCCG-TTTEE
*->vesaaeAvareikDGmt<-*
++saa+A+a + DG+t
gi|1824160 241 FASAADAIAINVTDGQT 257
Chlam_PMP: domain 2 of 3, from 329 to 362: score 1.2, E = 48
*->ditFsgNsa...............aggGGAiyas<-*
++t++gN+a ++++++++ +++++aggGG+ +++
gi|1824160 329 NSTITGNKAaggggggggagsgggAGGGGGGFGT 362
DUF1120: domain 1 of 1, from 453 to 472: score 1.6, E = 4.2
*->ttqlFGLGkttdGkKIGAYs<-*
+t+ +G G tt + +IGA++
gi|1824160 453 NTGTLGIGGTTFTHNIGAAG 472
Chlam_PMP: domain 3 of 3, from 461 to 479: score 4.1, E = 8
*->ditFsgNsaaggGGAiyas<-*
++tF++N++a+gGG+ +s
gi|1824160 461 GTTFTHNIGAAGGGGGGGS 479
Flagellin_IN: domain 1 of 3, from 484 to 507: score 1.6, E = 14
*->NsaaaktGVsAsvdadtnggrLvltstt<-*
N +a +tG+ A ++ g++vl ++
gi|1824160 484 NGGAGGTGIGALWNN----GGTVLVDSG 507
TRAP-gamma: domain 1 of 1, from 540 to 552: score -0.5, E = 8.4
*->iassGlvalLSTa<-*
+assG++ STa
gi|1824160 540 GASSGAITVDSTA 552
ThiF: domain 1 of 1, from 556 to 570: score 1.3, E = 8.1
*->rssrVlvvGaGGlGs<-*
++sr+ +vGa G G+
gi|1824160 556 SASRISIVGASGTGG 570
Miro: domain 1 of 3, from 559 to 569: score 2.5, E = 3.6
*->KvvviGdkgvG<-*
+++++G +g+G
gi|1824160 559 RISIVGASGTG 569
Semialdhyde_dh: domain 1 of 1, from 559 to 571: score 3.4, E = 1.5
CS EEEEETTTSHHHH
*->kVaIvGAtGyvGq<-*
++ IvGA+G +G+
gi|1824160 559 RISIVGASGTGGV 571
Miro: domain 2 of 3, from 670 to 680: score 0.7, E = 12
*->KvvviGdkgvG<-*
++++ G +g+G
gi|1824160 670 RISISGASGTG 680
tRNA-synt_2c: domain 1 of 1, from 681 to 697: score 2.5, E = 1.2
CS XXXXXXXXXXXXXXXXX
*->GslkvGdtVtavvDedr<-*
G +kvGdtVta +
gi|1824160 681 GAFKVGDTVTATWNNTA 697
Big_1: domain 1 of 4, from 749 to 778: score 0.8, E = 7.7
CS EEEE-S S-EEEEEEEEET.TECEEEEEEEE
*->vtLTst.kaGtytVtAslanngatsvdaktV<-*
v++T t+ aG +t tA+++ n ++++a+tV
gi|1824160 749 VSVTATdNAGNATTTADTT-NATVDNQAPTV 778
Miro: domain 3 of 3, from 782 to 792: score 0.7, E = 12
*->KvvviGdkgvG<-*
++++ G +g+G
gi|1824160 782 RISISGASGTG 792
EFP_N: domain 1 of 2, from 795 to 801: score 2.1, E = 9.7
*->FkaGdkv<-*
FkaGd+v
gi|1824160 795 FKAGDTV 801
EFP_N: domain 2 of 2, from 907 to 913: score 2.1, E = 9.7
*->FkaGdkv<-*
FkaGd+v
gi|1824160 907 FKAGDTV 913
FlaE: domain 1 of 1, from 933 to 1048: score 5.3, E = 0.46
*->lqvyFvK....eapnsttgdntWtvtvydtdd...............
++v+F++ ++++a+++t+++ tWt+t +++++ + ++ + + + ++
gi|1824160 933 VTVNFTQfgggAAVAATNSAGTWTATYLIAAGaieatnrnvsvtatd 979
...........................LtFD.snG...............
+ ++ +++ ++++ + ++ ++++ + F ++G+++++ +++ + +
gi|1824160 980 nagnatttadttnatvdnqvptttivtAAFSaDTGtsstdfitntasqti 1029
ttitsanvggaapvsitLd<-*
+ + sanv ++ +v+++Ld
gi|1824160 1030 SGTLSANVASGESVQVSLD 1048
Tymo_coat: domain 1 of 3, from 1024 to 1034: score 0.8, E = 10
CS SEEEEEEEEEE
*->TAsitIsGklr<-*
TAs tIsG+l+
gi|1824160 1024 TASQTISGTLS 1034
CHB_HEX_C: domain 1 of 1, from 1031 to 1055: score 2.4, E = 7.8
*->GkLhANvafPGLaIEYSlDgGknWqt<-*
G+L ANva G ++ SlD+G +W t
gi|1824160 1031 GTLSANVAS-GESVQVSLDNGSTWST 1055
PFL: domain 1 of 1, from 1032 to 1040: score -0.6, E = 4.2
CS TTHHHHHHH
*->TItsNVvyG<-*
T+++NV++G
gi|1824160 1032 TLSANVASG 1040
DUF1865: domain 1 of 1, from 1033 to 1061: score 0.9, E = 8.2
CS EEECCC...--------TTB-S--EE--C
*->LsdnaiSgesneantasgstsslltgavn<-*
Ls+n+ Sges + ++gst s+ t v+
gi|1824160 1033 LSANVASGESVQVSLDNGSTWSTATTTVG 1061
FMN_red: domain 1 of 1, from 1035 to 1083: score 0.9, E = 7.7
CS CEEEEEEGGCCECCG................. .TCCSHHHHHHHHH
*->ldqvvlhkaiqdfdegpitshtgptgafqdPa.lekqdavakellke
+++ + ++ ++ d+g t t++t++ q+ ++l++q+ +a ++lk+
gi|1824160 1035 ANVASGESVQVSLDNG-STWSTATTTVGQNTWsLAGQTLTASNTLKV 1080
CS HHH
lle<-*
+
gi|1824160 1081 RVL 1083
NLPC_P60: domain 1 of 1, from 1038 to 1062: score 1.4, E = 6
*->asrtgggvsGvISLtLisslsepyWqkrlvgvrR<-*
as g++v+ +s +++ W+ ++ v+
gi|1824160 1038 AS--GESVQ-------VSLDNGSTWSTATTTVGQ 1062
PKD: domain 1 of 2, from 1042 to 1060: score 1.4, E = 6.6
CS EEEEEETTCEEEEEEEEEEE
*->tLtvsngvgsasattttvtV<-*
++ vs ++gs+++t +t tV
gi|1824160 1042 SVQVSLDNGSTWST-ATTTV 1060
Mo-co_dimer: domain 1 of 3, from 1043 to 1056: score 1.6, E = 4.2
CS EEEESSTTSS-EE-
*->VEVSLDgGksWrlA<-*
V VSLD+G +W +A
gi|1824160 1043 VQVSLDNGSTWSTA 1056
BNR: domain 1 of 6, from 1044 to 1055: score 12.1, E = 0.026
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
++S D+G TWs+
gi|1824160 1044 QVSLDNGSTWST 1055
Tymo_coat: domain 2 of 3, from 1128 to 1138: score 0.8, E = 10
CS SEEEEEEEEEE
*->TAsitIsGklr<-*
TAs tIsG+l+
gi|1824160 1128 TASQTISGTLS 1138
Flagellin_C: domain 1 of 1, from 1138 to 1148: score 2.3, E = 8.1
*->ssnmtKnQILq<-*
s+nm ++ ILq
gi|1824160 1138 SANMAAGEILQ 1148
PKD: domain 2 of 2, from 1147 to 1164: score 0.5, E = 12
CS EEEEETTCEEEEEEEEEEE
*->LtvsngvgsasattttvtV<-*
L vs + gs++++ +t tV
gi|1824160 1147 LQVSLDDGSTWSS-ATTTV 1164
StbA: domain 1 of 1, from 1147 to 1156: score 2.6, E = 1.8
CS -EEEEEE-SS
*->MkifiDDGST<-*
+ ++ DDGST
gi|1824160 1147 LQVSLDDGST 1156
BNR: domain 2 of 6, from 1148 to 1159: score 10.5, E = 0.074
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
++S D+G TWs
gi|1824160 1148 QVSLDDGSTWSS 1159
Mo-co_dimer: domain 2 of 3, from 1149 to 1160: score 1.3, E = 5.1
CS EESSTTSS-EE-
*->VSLDgGksWrlA<-*
VSLD+G +W A
gi|1824160 1149 VSLDDGSTWSSA 1160
Big_1: domain 2 of 4, from 1236 to 1268: score 3.2, E = 1.3
CS EEEEEEE-SS-EEEEEEEEET.TECEEEEEEEE
*->kAtvtLTstkaGtytVtAslanngatsvdaktV<-*
++t+tL++ aGt++V sl+n++ +++ V
gi|1824160 1236 TITATLSGAPAGTDIVYGSLDNGSTWANITAKV 1268
TIR-like: domain 1 of 3, from 1250 to 1261: score 0.6, E = 13
*->vVYvkmDdsggW<-*
+VY +D+ ++W
gi|1824160 1250 IVYGSLDNGSTW 1261
BNR: domain 3 of 6, from 1252 to 1263: score 5.2, E = 3.1
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
y S D+G TW
gi|1824160 1252 YGSLDNGSTWAN 1263
Big_2: domain 1 of 2, from 1267 to 1292: score 3.2, E = 3.1
CS EEEEEEETTT.TEEES--SEEETTSEEE
*->avtsvtvsptgntaslakGatlqlkatv<-*
+v + t++ + ++la+ +tlqlk+t+
gi|1824160 1267 KVSGTTLTWN--GVTLAASNTLQLKVTD 1292
He_PIG: domain 1 of 5, from 1272 to 1295: score 1.9, E = 9.7
*->ritGt.PtptvqpGsytftvtatdgsg<-*
++t+ ++t + s t + +td++g
gi|1824160 1272 TLTWNgVTLA---ASNTLQLKVTDAAG 1295
Big_1: domain 3 of 4, from 1343 to 1372: score 1.4, E = 5.1
CS EEEE-SS-EEEEEEEEET.TECEEEEEEEE
*->vtLTstkaGtytVtAslanngatsvdaktV<-*
+tL++ aGt++V sl+n++ +++ V
gi|1824160 1343 ATLSGAPAGTDIVYGSLDNGSTWTNITAKV 1372
Fil_haemagg: domain 1 of 4, from 1354 to 1407: score 0.9, E = 16
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
++ G+l++ + ++++++ +gt + +g+tl++ +l+ t +ag
gi|1824160 1354 IVYGSLDNGST-WTNITAKVSGTTLTWNGVTLSGSDTLQLKVTDAAG 1399
CS ...............EEEEES
gdlllaagalrnggdltltaa<-*
d ++l+++
gi|1824160 1400 ND-------------GALASQ 1407
TIR-like: domain 2 of 3, from 1354 to 1365: score 0.6, E = 13
*->vVYvkmDdsggW<-*
+VY +D+ ++W
gi|1824160 1354 IVYGSLDNGSTW 1365
BNR: domain 4 of 6, from 1356 to 1367: score 6.5, E = 1.3
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
y S D+G TW+
gi|1824160 1356 YGSLDNGSTWTN 1367
DUF291: domain 1 of 3, from 1375 to 1386: score 1.0, E = 20
*->vtltlNGNTLtg<-*
+tlt+NG TL+g
gi|1824160 1375 TTLTWNGVTLSG 1386
He_PIG: domain 2 of 5, from 1376 to 1399: score 0.8, E = 19
*->ritGt.PtptvqpGsytftvtatdgsg<-*
++t+ ++t + Gs t + +td++g
gi|1824160 1376 TLTWNgVTLS---GSDTLQLKVTDAAG 1399
NPCBM: domain 1 of 2, from 1381 to 1397: score 2.7, E = 1.7
*->GvDVasGaktlkLVVtda<-*
Gv + sG++tl+L+Vtda
gi|1824160 1381 GVTL-SGSDTLQLKVTDA 1397
Big_1: domain 4 of 4, from 1447 to 1472: score 1.0, E = 6.6
CS EEEE-SS-EEEEEEEEET.TECEEEEEEEE
*->vtLTstkaGtytVtAslanngatsvdaktV<-*
+tL++ aGt++V sl+ ng+t ++V
gi|1824160 1447 ATLSGAPAGTDIVYGSLD-NGSTW---TNV 1472
Fil_haemagg: domain 2 of 4, from 1458 to 1511: score 0.8, E = 17
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
++ G+l++ + +++ ++ +gt + +g+tl++ +l+ t +ag
gi|1824160 1458 IVYGSLDNGST-WTNVTAKVSGTTLTWNGVTLSGSDTLQLKVTDAAG 1503
CS ...............EEEEES
gdlllaagalrnggdltltaa<-*
d ++l+++
gi|1824160 1504 ND-------------GALASQ 1511
TIR-like: domain 3 of 3, from 1458 to 1469: score 0.6, E = 13
*->vVYvkmDdsggW<-*
+VY +D+ ++W
gi|1824160 1458 IVYGSLDNGSTW 1469
BNR: domain 5 of 6, from 1460 to 1471: score 6.5, E = 1.3
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
y S D+G TW+
gi|1824160 1460 YGSLDNGSTWTN 1471
DUF291: domain 2 of 3, from 1479 to 1490: score 1.0, E = 20
*->vtltlNGNTLtg<-*
+tlt+NG TL+g
gi|1824160 1479 TTLTWNGVTLSG 1490
He_PIG: domain 3 of 5, from 1480 to 1503: score 0.8, E = 19
*->ritGt.PtptvqpGsytftvtatdgsg<-*
++t+ ++t + Gs t + +td++g
gi|1824160 1480 TLTWNgVTLS---GSDTLQLKVTDAAG 1503
NPCBM: domain 2 of 2, from 1485 to 1501: score 2.7, E = 1.7
*->GvDVasGaktlkLVVtda<-*
Gv + sG++tl+L+Vtda
gi|1824160 1485 GVTL-SGSDTLQLKVTDA 1501
Tymo_coat: domain 3 of 3, from 1544 to 1554: score 0.8, E = 10
CS SEEEEEEEEEE
*->TAsitIsGklr<-*
TAs tIsG+l+
gi|1824160 1544 TASQTISGTLS 1554
F5_F8_type_C: domain 1 of 1, from 1563 to 1619: score 2.9, E = 2.5
CS EEEESSS.S.SEEEEEEE.....S.TTC--EEE SSS SEEEEEEEE
*->iqySdDGgesnWttvkdgedylsdsggpkvFgn.dnd.pvknlfdpp
+++S+D+g+ +W++ + + n+ l ++
gi|1824160 1563 VEVSLDNGS-TWNSATT--------------SVgQNTwSLAGLTLTA 1594
CS EEEEEEEEEEEEETTCSS-EEEEEE
ikARYvRivptswnggggiasraEl<-*
++ vR++ t+ n+g +++++ l
gi|1824160 1595 SNTLKVRVTDTAGNSGAVFGQAYVL 1619
Mo-co_dimer: domain 3 of 3, from 1563 to 1576: score 8.0, E = 0.057
CS EEEESSTTSS-EE-
*->VEVSLDgGksWrlA<-*
VEVSLD+G +W+ A
gi|1824160 1563 VEVSLDNGSTWNSA 1576
BNR: domain 6 of 6, from 1564 to 1575: score 8.3, E = 0.36
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
+S D+G TW+
gi|1824160 1564 EVSLDNGSTWNS 1575
Big_2: domain 2 of 2, from 1620 to 1647: score 2.1, E = 6.2
CS EEEEEEETTT. TEEES--SEEETTSE
*->avtsvtvsptg..ntaslakGatlqlka<-*
+ t+ tv++ g + +a++++G+ l +++
gi|1824160 1620 DATGSTVTSVGvpANATYLAGQNLDFTV 1647
FG-GAP: domain 1 of 2, from 1688 to 1703: score 2.4, E = 10
CS CCSCEEEC-TTSSSSS
*->fgssvaagDlnGDGrp<-*
f ++ gDl+ DG++
gi|1824160 1688 FRYQTQSGDLDADGIT 1703
Myosin_N: domain 1 of 1, from 1712 to 1739: score 3.5, E = 4.9
CS EEEEEECTTEEEEEETTT.TEEEEEETCC
*->geIksrkGdkVtVktedtSGktvtVkkDd<-*
g+I++ +G++ t ++ G+t V+ D
gi|1824160 1712 GTIQDAAGNNATLTLNS-VGSTASVNVDA 1739
BiPBP_C: domain 1 of 1, from 1713 to 1726: score 2.8, E = 3.4
*->tVvDadGrsdrvVrf<-*
t++Da+G++++ +
gi|1824160 1713 TIQDAAGNNATL-TL 1726
DUF291: domain 3 of 3, from 1718 to 1726: score 0.5, E = 27
*->aGaTadpvLtv<-*
aG+ +++Lt+
gi|1824160 1718 AGN--NATLTL 1726
Flagellin_IN: domain 2 of 3, from 1723 to 1741: score 4.8, E = 1.7
*->tltinggggkensvadgvdislsa<-*
tlt+n +g++++ v+++++a
gi|1824160 1723 TLTLNSVGSTAS-----VNVDAVA 1741
JmjC: domain 1 of 1, from 1753 to 1771: score 1.0, E = 8.8
*->gayHavfNlGfniaeavNF<-*
g+y a++Nl+f++ + N+
gi|1824160 1753 GTYKAGQNLDFTVTYSENV 1771
Flagellin_IN: domain 3 of 3, from 1770 to 1795: score 1.2, E = 18
*->tltinggggkensvadgvdislsagdslaal<-*
++t n ggg+ ++++l+ g s+ a+
gi|1824160 1770 NVTVNTGGGTPY-----IAVTLATGGSVQAA 1795
Xlink: domain 1 of 1, from 1785 to 1799: score 0.3, E = 1.8
*->riATtgQLyAAwkgG<-*
++AT g ++AA++gG
gi|1824160 1785 TLATGGSVQAAYSGG 1799
FG-GAP: domain 2 of 2, from 1807 to 1822: score 4.3, E = 2.8
CS CCSCEEEC-TTSSSSS
*->fgssvaagDlnGDGrp<-*
f ++v+agD + DG++
gi|1824160 1807 FRYTVVAGDADADGIA 1822
Malate_synthase: domain 1 of 1, from 1882 to 1900: score -1.0, E = 8.6
CS HHHHHCTHHHHT--HHHHH
*->vdfvgpevpegaeIlTkeA<-*
v+f+ + +++ ++++T+++
gi|1824160 1882 VVFRVTFAEPVTGVDTADF 1900
MucBP: domain 1 of 2, from 1886 to 1915: score 1.6, E = 11
*->Vv.gq.vTp.tlkdtlpvnvtYtfngtiqtV<-*
V+ +++vT+ +++d + + t+t++g i+ V
gi|1824160 1886 VTfAEpVTGvDTADF-TLTKTGTADGAIASV 1915
Fil_haemagg: domain 3 of 4, from 1929 to 1953: score 1.7, E = 9.2
CS EEESSEEEETTTT--EE-SEEEEEE-STT
*->vaaGaltlnaaalggldlnnggtlsaggg<-*
+++G++tl+ + l+++++g+ ++ g+
gi|1824160 1929 TVSGNGTLRLD----LNNAGTGIADTPGN 1953
HI0933_like: domain 1 of 1, from 1956 to 1964: score -0.1, E = 7.8
*->aSGyaAGqg<-*
a+Gy AGq
gi|1824160 1956 ATGYTAGQT 1964
DUF196: domain 1 of 1, from 2032 to 2048: score 3.7, E = 2
*->vvYDisdd..ggkrRrn<-*
+vYD+s ++ g+ R++
gi|1824160 2032 LVYDVSVNpvSGQGRLR 2048
DUF1775: domain 1 of 1, from 2088 to 2104: score 0.8, E = 7.7
*->lsalvvstlafsaapAsAH<-*
l ++v++t+ +a+ AsAH
gi|1824160 2088 LNLTVTGTV--GANLASAH 2104
Lipoprotein_6: domain 1 of 1, from 2105 to 2125: score 1.4, E = 3.3
CS HHHHHHHHHHHHT-- XXXXX
*->KAAkeavenaikELT.sPVka<-*
KAA+ ++a LT s V+a
gi|1824160 2105 KAAQRFTTAAGQPLTlSSVVA 2125
OMP_19: domain 1 of 1, from 2111 to 2122: score 2.6, E = 3.7
*->qTngGQPvSLSR<-*
+T GQP++LS
gi|1824160 2111 TTAAGQPLTLSS 2122
Fil_haemagg: domain 4 of 4, from 2123 to 2180: score 0.8, E = 17
CS EEESSEEEETT TT--EE-SEEEEEE-STT-EEEE-S-EEESSE..
*->vaaGaltlnaa..alggldlnnggtlsagggltltaagllnnggtli
v+a +t++a+++ +++++n+g+ +++ g++lt+ g+l++ g
gi|1824160 2123 VVARLGTVTATptPVVQIYTDNAGAPGTAVGTALTNPGTLTAPGLNV 2169
CS ...........
aggdlllaaga<-*
+g ++laa++
gi|1824160 2170 WTGSVTLAAST 2180
DUF1708: domain 1 of 1, from 2183 to 2190: score -0.3, E = 5.6
*->WlVleEqv<-*
W+V+eE v
gi|1824160 2183 WIVFEETV 2190
He_PIG: domain 4 of 5, from 2251 to 2265: score 1.5, E = 12
*->G.sytftvtatdgsg<-*
G+ +++tvtat++ +
gi|1824160 2251 GtPFSYTVTATNTPT 2265
He_PIG: domain 5 of 5, from 2266 to 2306: score 43.1, E = 1.9e-11
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
+y++T gLP GL+ + +tG+itGtP+ +
gi|1824160 2266 SYAAT-----------------GLPGGLSVNTTTGAITGTPNAA--- 2292
Gsytftvtatdgsg<-*
G++++ +tat++sg
gi|1824160 2293 GTSNVALTATNASG 2306
Ago_hook: domain 1 of 1, from 2287 to 2312: score 2.6, E = 6.4
*->GkPndsgpsWGeppdegasasGWGss<-*
G Pn +g+s++ + +++as +G++s+
gi|1824160 2287 GTPNAAGTSNVALTATNASGTGPAST 2312
RBDV_coat: domain 1 of 1, from 2306 to 2316: score 3.2, E = 0.46
*->GtGKsstivLt<-*
GtG +st+vLt
gi|1824160 2306 GTGPASTLVLT 2316
SSI: domain 1 of 1, from 2311 to 2325: score 1.2, E = 6
CS ----EEEEEEEESSSTTSS-
*->YAPSALVLTvGqGdsaAtag<-*
S LVLT+G+G At++
gi|1824160 2311 ---STLVLTIGKGS--ATVT 2325
Triadin: domain 1 of 1, from 2360 to 2376: score -0.2, E = 6.4
*->tEitAEGnAsitttviD<-*
t tA Gn s+t t+ D
gi|1824160 2360 TAPTAVGNYSVTATIND 2376
MucBP: domain 2 of 2, from 2409 to 2436: score 1.9, E = 8.8
*->gq.vTptlkdt.lpvnvtYtfngtiqtV<-*
+++ T+t++ +lpv+vtY ++t+ t
gi|1824160 2409 AKsATATTTPAgLPVTVTYDGSATAPTA 2436
Fimbrial_K88: domain 1 of 1, from 2419 to 2428: score 5.1, E = 0.39
*->ApLnVtVtYq<-*
A+L+VtVtY
gi|1824160 2419 AGLPVTVTYD 2428
Pardaxin: domain 1 of 1, from 2477 to 2493: score 3.1, E = 3.6
*->tLLsAvGsALsssGeqE<-*
t +sAv s L s G E
gi|1824160 2477 TQISAVNSGLTSGGHWE 2493
DUF1201: domain 1 of 1, from 2565 to 2588: score 3.2, E = 3.1
*->vYKqiLFRttaqsnEARfnrstvv<-*
vY q+L t s A n+ t v
gi|1824160 2565 VYDQVLLGGTGASITANTNKVTRV 2588
Gemini_mov: domain 1 of 1, from 2612 to 2626: score 2.6, E = 2.4
*->MdpagyqvpPsalpysq<-*
Md a+ + p al+y+q
gi|1824160 2612 MDDASQPAP--ALNYNQ 2626
PIG-P: domain 1 of 1, from 2656 to 2666: score 1.2, E = 5.3
*->piseVnklLYl<-*
pi+ Vn +L++
gi|1824160 2656 PITAVNQTLFK 2666
HTH_11: domain 1 of 1, from 2680 to 2693: score 4.3, E = 3.7
*->vpIesepgrgGGYr<-*
v I+s++g+ GG+r
gi|1824160 2680 VAIQSTNGKFGGIR 2693
RRF: domain 1 of 1, from 2684 to 2698: score 4.2, E = 1.1
CS HHHHHHHH---SS--
*->alkeelstiRTGRan<-*
+ + ++ +iRTG+a+
gi|1824160 2684 STNGKFGGIRTGNAH 2698
RE_XamI: domain 1 of 1, from 2694 to 2709: score -0.2, E = 8.6
*->tGyLgyaAAeGLdwVW<-*
tG+ y A +G ++V+
gi|1824160 2694 TGNAHYYASQGFTGVY 2709
Ribosomal_S11: domain 1 of 1, from 2695 to 2703: score 1.9, E = 2.7
*->GiaHIqasF<-*
G+aH++as+
gi|1824160 2695 GNAHYYASQ 2703
DUF853: domain 1 of 1, from 2764 to 2781: score -1.5, E = 9.3
*->esllgagtpgqplglalk<-*
++++ +gt +q+++l+++
gi|1824160 2764 QVRMVDGTTSQGVTLPAQ 2781
Hexapep: domain 1 of 1, from 2785 to 2802: score 3.5, E = 8.5
CS TEEECTTEEEETTEEEET
*->gviIGdnvvIgpgvvIgd<-*
gv I+d++ + + v+ +
gi|1824160 2785 GVLIEDGTNVTSQIVVNP 2802
//