hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            183600432.fa
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Query sequence: gi|183600432|ref|ZP_02961925.1|
Accession:      [none]
Description:    hypothetical protein PROSTU_04003 [Providencia stuartii ATCC 25827]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Spo0A_C         Sporulation initiation factor Spo0A C     1.9        5.4   1
Flavi_M         Flavivirus envelope glycoprotein M        1.7        6.1   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Flavi_M           1/1       3    14 ..     1    12 [.     1.7      6.1
Spo0A_C           1/1      26    44 ..    97   116 .]     1.9      5.4

Alignments of top-scoring domains:
Flavi_M: domain 1 of 1, from 3 to 14: score 1.7, E = 6.1
                   *->SVsippHaesgL<-*
                      S+ i +H+e+gL
  gi|1836004     3    SIIIKTHGEKGL    14

Spo0A_C: domain 1 of 1, from 26 to 44: score 1.9, E = 5.4
                CS    -HHHHHHHHHHHHHHT----
                   *->TNSEFIAmiADKLRleakas<-*
                      TN+ + A++ADK+  + k s
  gi|1836004    26    TNANCHALLADKIK-GIKQS    44

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