hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 183986639.fa
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Query sequence: gi|183986639|ref|NP_001116909.1|
Accession: [none]
Description: nasal embryonic LHRH factor [Xenopus tropicalis]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IQ IQ calmodulin-binding motif 9.5 0.12 1
cwf21 cwf21 6.7 0.45 1
He_PIG_assoc He_PIG associated, NEW1 domain of bac 5.9 0.68 1
DNA_pol_viral_N DNA polymerase (viral) N-terminal dom -0.3 1.8 1
Ribosomal_L6e Ribosomal protein L6e 4.0 2.3 1
PRD PRD domain 3.7 2.6 1
IlvC Acetohydroxy acid isomeroreductase, c 1.8 3.3 1
RasGEF RasGEF domain 2.7 3.4 1
Connexin Connexin 0.6 5.5 1
c-SKI_SMAD_bind c-SKI Smad4 binding domain 1.6 6.1 1
zf-NF-X1 NF-X1 type zinc finger 1.8 6.2 1
IFRD Interferon-related developmental regu -0.2 6.5 1
DUF2472 Protein of unknown function (DUF2742) 1.3 9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
IlvC 1/1 8 31 .. 258 281 .] 1.8 3.3
DNA_pol_viral_N 1/1 56 94 .. 1 56 [. -0.3 1.8
He_PIG_assoc 1/1 94 104 .. 18 29 .] 5.9 0.68
zf-NF-X1 1/1 162 170 .. 15 23 .] 1.8 6.2
IQ 1/1 249 263 .. 1 15 [. 9.5 0.12
c-SKI_SMAD_bind 1/1 376 392 .. 82 98 .] 1.6 6.1
IFRD 1/1 377 388 .. 354 365 .] -0.2 6.5
DUF2472 1/1 379 399 .. 107 130 .] 1.3 9
PRD 1/1 381 393 .. 1 13 [. 3.7 2.6
cwf21 1/1 385 395 .. 36 46 .] 6.7 0.45
Connexin 1/1 437 448 .. 1 13 [. 0.6 5.5
RasGEF 1/1 469 482 .. 145 159 .. 2.7 3.4
Ribosomal_L6e 1/1 474 485 .. 103 114 .] 4.0 2.3
Alignments of top-scoring domains:
IlvC: domain 1 of 1, from 8 to 31: score 1.8, E = 3.3
CS HHCTS-S------TT-SSS-GGG-
*->rkeerehliEkvGkkLRklmpwlk<-*
rk++r+ +i v++k+R+ + +
gi|1839866 8 RKALRNDPISNVAAKVRAARAFGE 31
DNA_pol_viral_N: domain 1 of 1, from 56 to 94: score -0.3, E = 1.8
*->MplsyqqsLDqsrWLreaekhFRkLllLddeevqeelGPleeeLPrL
M + +q h R+L +L d+ ++ ee +++L
gi|1839866 56 MLPASQ--------------HKRRLSSLSDSKLDRSF--SEERGEKL 86
adegiGePL<-*
+eg PL
gi|1839866 87 PGEG-SKPL 94
He_PIG_assoc: domain 1 of 1, from 94 to 104: score 5.9, E = 0.68
*->LfYIptSGqRPm<-*
L Y +SG+RPm
gi|1839866 94 LVY-TISGERPM 104
zf-NF-X1: domain 1 of 1, from 162 to 170: score 1.8, E = 6.2
*->dGpCppCpq<-*
+++Cp C++
gi|1839866 162 SKECPTCTR 170
IQ: domain 1 of 1, from 249 to 263: score 9.5, E = 0.12
CS HHHCHHHHHHHHHHH
*->rraaikIQaawRGyl<-*
++a +IQ+++R +l
gi|1839866 249 NDSAAVIQRHFRKHL 263
c-SKI_SMAD_bind: domain 1 of 1, from 376 to 392: score 1.6, E = 6.1
CS CHHHHHHHHHHHHCC--
*->eeakLeqvLeevkekFd<-*
e+a+ e +Lee++ k +
gi|1839866 376 EHATFEDILEEIEKKLN 392
IFRD: domain 1 of 1, from 377 to 388: score -0.2, E = 6.5
*->RstFRDVlrfvE<-*
++tF D+l+ +E
gi|1839866 377 HATFEDILEEIE 388
DUF2472: domain 1 of 1, from 379 to 399: score 1.3, E = 9
*->tyedgyndfeeypaqLnkyrklrv<-*
t+ed ++ee+++ Ln yrk+ +
gi|1839866 379 TFED---ILEEIEKKLNIYRKGCK 399
PRD: domain 1 of 1, from 381 to 393: score 3.7, E = 2.6
CS HHHHHHHHHHHTS
*->eelleeiekklqi<-*
e++leeiekkl+i
gi|1839866 381 EDILEEIEKKLNI 393
cwf21: domain 1 of 1, from 385 to 395: score 6.7, E = 0.45
*->eEIEekVnelR<-*
eEIE+k n++R
gi|1839866 385 EEIEKKLNIYR 395
Connexin: domain 1 of 1, from 437 to 448: score 0.6, E = 5.5
CS -TTHHHHHHHHHH
*->dWsfLgkLLegVn<-*
W+ Lg+L ++Vn
gi|1839866 437 -WKRLGRLMSKVN 448
RasGEF: domain 1 of 1, from 469 to 482: score 2.7, E = 3.4
*->klIfeeLnkLmdsdr<-*
kl f++L++Lm+++r
gi|1839866 469 KL-FQNLKNLMSPHR 482
Ribosomal_L6e: domain 1 of 1, from 474 to 485: score 4.0, E = 2.3
*->LknGqyPHkmkF<-*
Lkn + PH+m F
gi|1839866 474 LKNLMSPHRMEF 485
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