hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 187477221.fa
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Query sequence: gi|187477221|ref|YP_785245.1|
Accession: [none]
Description: adhesin [Bordetella avium 197N]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Haemagg_act haemagglutination activity domain 126.6 2.6e-36 1
Fil_haemagg Haemagluttinin repeat 87.3 1.9e-24 12
DUF1438 Protein of unknown function (DUF1438) 5.2 0.11 1
KorB KorB domain 6.4 0.47 1
DnaJ DnaJ domain 5.8 0.5 1
DUF1579 Protein of unknown function (DUF1579) 5.6 0.53 1
Ribosomal_S10 Ribosomal protein S10p/S20e 5.9 0.83 1
TFIIA_gamma_C Transcription initiation factor IIA, 6.7 0.98 1
DUF2025 Protein of unknown function (DUF2025) 4.0 1.2 1
Exon_PolB Predicted 3'-5' exonuclease related t 2.8 1.6 1
Pyocin_S S-type Pyocin 3.1 1.6 1
DUF1551 Protein of unknown function (DUF1551) 1.6 1.8 1
Exonuc_X-T_C Exonuclease C-terminal 3.0 2.3 1
POPLD POPLD (NUC188) domain 1.0 2.3 1
DUF1525 Protein of unknown function (DUF1525) 3.5 2.4 1
NUFIP1 Nuclear fragile X mental retardation- 4.5 2.4 1
DUF1760 Fungal protein of unknown function (D 0.7 2.5 1
L27_2 L27_2 3.9 2.6 1
GshA Glutamate-cysteine ligase 0.9 2.6 1
Adeno_terminal Adenoviral DNA terminal protein 0.8 2.8 1
LacI Bacterial regulatory proteins, lacI f 4.2 3 1
Bac_thur_toxin Bacillus thuringiensis toxin 2.0 3 1
GBP_repeat Glycophorin-binding protein 3.2 3.1 1
BPL_C Biotin protein ligase C terminal doma 3.9 3.1 1
DUF746 Domain of Unknown Function (DUF746) 3.2 3.8 1
GSPII_IJ Bacterial type II secretion system pr 3.0 3.8 1
DUF1191 Protein of unknown function (DUF1191) 0.3 3.9 1
PAPA-1 PAPA-1-like conserved region 2.5 4.1 1
ArabFuran-catal Alpha-L-arabinofuranosidase B, cataly -0.7 4.6 1
YCII YCII-related domain 2.3 4.6 1
His_biosynth Histidine biosynthesis protein 0.9 4.7 1
Pyridoxal_deC Pyridoxal-dependent decarboxylase con 0.2 4.8 1
Keratin_assoc Keratinocyte-associated protein 2 1.6 4.9 1
nsp9 nsp9 replicase -0.3 5 1
DUF1002 Protein of unknown function (DUF1002) 1.6 5.3 1
DUF137 Protein of unknown function DUF137 1.8 5.3 1
DUF1363 Protein of unknown function (DUF1363) 0.5 6 1
DUF2375 Protein of unknown function (DUF2375) 2.5 6.1 1
LuxQ-periplasm LuxQ, periplasmic 0.4 6.3 1
Phage-MuB_C Mu B transposition protein, C termina 2.5 6.6 1
BCAS2 Breast carcinoma amplified sequence 2 0.8 6.8 1
ECH Enoyl-CoA hydratase/isomerase family 1.2 7.1 1
Calponin Calponin family repeat 4.3 7.3 1
COX4_pro_2 Bacterial aa3 type cytochrome c oxida 2.0 7.5 1
Diphthamide_syn Putative diphthamide synthesis protei -0.4 7.8 1
PPV_E2_C E2 (early) protein, C terminal 2.3 7.9 1
DUF2381 Protein of unknown function (DUF2381) 0.2 8.1 1
aPHC Alkaline phytoceramidase (aPHC) -0.4 8.2 1
Fiji_64_capsid Fijivirus 64 kDa capsid protein -1.1 8.2 1
SAM_2 SAM domain (Sterile alpha motif) 1.9 8.4 1
ORC2 Origin recognition complex subunit 2 -0.2 8.5 1
SNURF SNURF/RPN4 protein 1.8 8.6 1
AraC_binding AraC-like ligand binding domain 1.4 8.6 1
DUF2190 Uncharacterized conserved protein (DU 1.3 8.7 1
Transposase_11 Transposase DDE domain 0.6 8.8 1
MSP1_C Merozoite surface protein 1 (MSP1) C- -1.6 9 1
DUF1508 Domain of unknown function (DUF1508) 1.8 9.3 1
Antimicrobial_7 Scorpion antimicrobial peptide 1.2 9.3 1
PH_2 Plant pleckstrin homology-like region 1.0 9.5 1
FCD FCD domain 0.6 9.8 1
Pterin_bind Pterin binding enzyme 0.4 9.9 1
OmpW OmpW family 0.3 9.9 1
vATP-synt_E ATP synthase (E/31 kDa) subunit -0.2 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF746 1/1 37 53 .. 1 17 [. 3.2 3.8
DUF2381 1/1 50 60 .. 1 11 [. 0.2 8.1
Haemagg_act 1/1 59 196 .. 1 139 [] 126.6 2.6e-36
Bac_thur_toxin 1/1 87 109 .. 1 23 [. 2.0 3
Pterin_bind 1/1 89 100 .. 219 230 .] 0.4 9.9
Fil_haemagg 1/12 160 211 .. 19 75 .] 1.3 12
DUF1363 1/1 202 216 .. 1 16 [. 0.5 6
Calponin 1/1 245 253 .. 1 9 [. 4.3 7.3
Fil_haemagg 2/12 247 323 .. 1 75 [] 1.5 10
nsp9 1/1 296 302 .. 106 112 .] -0.3 5
ArabFuran-catal 1/1 308 327 .. 1 20 [. -0.7 4.6
Fil_haemagg 3/12 325 383 .. 1 68 [. 1.4 11
DUF2190 1/1 328 351 .. 1 25 [. 1.3 8.7
BPL_C 1/1 333 354 .. 1 25 [. 3.9 3.1
Fil_haemagg 4/12 451 508 .. 1 75 [] 18.4 0.00014
Fil_haemagg 5/12 530 606 .. 1 75 [] 29.1 1.2e-07
Pyocin_S 1/1 530 550 .. 1 21 [. 3.1 1.6
OmpW 1/1 551 560 .. 1 10 [. 0.3 9.9
PH_2 1/1 553 563 .. 1 11 [. 1.0 9.5
Fil_haemagg 6/12 616 664 .. 32 75 .] 1.3 12
GSPII_IJ 1/1 628 639 .. 1 12 [. 3.0 3.8
Phage-MuB_C 1/1 658 675 .. 1 18 [. 2.5 6.6
YCII 1/1 686 711 .. 53 78 .. 2.3 4.6
aPHC 1/1 697 726 .. 299 328 .] -0.4 8.2
Fil_haemagg 7/12 724 763 .. 24 75 .] 8.5 0.1
GshA 1/1 749 761 .. 1 13 [. 0.9 2.6
Fil_haemagg 8/12 769 806 .. 26 75 .] 1.7 9.5
MSP1_C 1/1 804 825 .. 1 22 [. -1.6 9
DUF2025 1/1 828 844 .. 15 31 .. 4.0 1.2
Fil_haemagg 9/12 869 936 .. 1 75 [] 10.2 0.032
PPV_E2_C 1/1 876 886 .. 71 81 .] 2.3 7.9
COX4_pro_2 1/1 880 890 .. 1 18 [. 2.0 7.5
PAPA-1 1/1 1027 1045 .. 80 98 .] 2.5 4.1
LuxQ-periplasm 1/1 1057 1067 .. 231 241 .] 0.4 6.3
DUF1760 1/1 1113 1149 .. 720 758 .] 0.7 2.5
NUFIP1 1/1 1124 1148 .. 25 50 .] 4.5 2.4
ORC2 1/1 1129 1142 .. 380 393 .] -0.2 8.5
vATP-synt_E 1/1 1136 1147 .. 1 12 [. -0.2 10
Antimicrobial_7 1/1 1227 1233 .. 37 43 .] 1.2 9.3
ECH 1/1 1340 1364 .. 99 125 .. 1.2 7.1
DUF2375 1/1 1375 1387 .. 51 63 .. 2.5 6.1
AraC_binding 1/1 1376 1416 .. 44 84 .. 1.4 8.6
Fil_haemagg 10/12 1444 1539 .. 19 75 .] 6.0 0.55
DUF1002 1/1 1466 1484 .. 1 21 [. 1.6 5.3
Fiji_64_capsid 1/1 1524 1539 .. 1 16 [. -1.1 8.2
His_biosynth 1/1 1661 1670 .. 242 251 .] 0.9 4.7
LacI 1/1 1704 1718 .. 1 15 [. 4.2 3
Fil_haemagg 11/12 1747 1817 .. 1 58 [. 4.5 1.4
SNURF 1/1 1756 1770 .. 1 15 [. 1.8 8.6
Fil_haemagg 12/12 1934 2003 .. 1 75 [] 3.4 3
DUF1525 1/1 2154 2166 .. 1 13 [. 3.5 2.4
FCD 1/1 2359 2369 .. 114 124 .] 0.6 9.8
L27_2 1/1 2495 2506 .. 1 12 [. 3.9 2.6
KorB 1/1 2505 2539 .. 53 96 .] 6.4 0.47
TFIIA_gamma_C 1/1 2576 2586 .. 54 64 .] 6.7 0.98
DUF1438 1/1 2578 2603 .. 126 151 .] 5.2 0.11
Diphthamide_syn 1/1 2619 2629 .. 1 11 [. -0.4 7.8
Ribosomal_S10 1/1 2845 2863 .. 1 19 [. 5.9 0.83
DUF137 1/1 2849 2865 .. 162 178 .] 1.8 5.3
Adeno_terminal 1/1 2855 2871 .. 587 606 .] 0.8 2.8
BCAS2 1/1 2867 2879 .. 1 23 [. 0.8 6.8
Keratin_assoc 1/1 2922 2937 .. 118 133 .] 1.6 4.9
GBP_repeat 1/1 2978 3008 .. 8 38 .] 3.2 3.1
DnaJ 1/1 2984 2994 .. 65 75 .] 5.8 0.5
Pyridoxal_deC 1/1 3009 3019 .. 1 11 [. 0.2 4.8
DUF1551 1/1 3036 3073 .. 376 413 .] 1.6 1.8
POPLD 1/1 3038 3045 .. 1 8 [. 1.0 2.3
DUF1191 1/1 3043 3050 .. 329 336 .] 0.3 3.9
Transposase_11 1/1 3126 3170 .. 1 68 [. 0.6 8.8
DUF1508 1/1 3169 3177 .. 1 9 [. 1.8 9.3
DUF1579 1/1 3206 3216 .. 111 121 .] 5.6 0.53
Exon_PolB 1/1 3258 3277 .. 206 227 .] 2.8 1.6
SAM_2 1/1 3262 3287 .. 1 27 [. 1.9 8.4
Exonuc_X-T_C 1/1 3270 3297 .. 245 272 .] 3.0 2.3
Alignments of top-scoring domains:
DUF746: domain 1 of 1, from 37 to 53: score 3.2, E = 3.8
*->erlrelIRlLSqpisla<-*
+r r+lIRlL+++ +l+
gi|1874772 37 GRSRLLIRLLPLAGLLM 53
DUF2381: domain 1 of 1, from 50 to 60: score 0.2, E = 8.1
*->aLLagtaArAq<-*
LL++++ArA+
gi|1874772 50 GLLMALPARAA 60
Haemagg_act: domain 1 of 1, from 59 to 196: score 126.6, E = 2.6e-36
CS X---EE-TT-EEE-...-TTS--EEE-----TTSEEEEEEEE--B-T
*->aqslpdgglvtngtvtiqatgvpitggtipqtsgnlfisfssFnVgq
a+++pdg +v + +gvp+++++ p + g++ ++f+++++ q
gi|1874772 59 AAIVPDGPQVSAIP---APNGVPVINIAPPDSQGLSRNRFEKLDIEQ 102
CS TEEEEEE-SS EEETTTEEE---TT-. SS--SEEEEEE-S S--EEEEE
ggtvlFnatq.gqSqLgGnltgNpnLa.pgaasnIlNRVTG.gnaSqIqG
g+v +n+t++g+SqL+G++ +Np L++ + a Il +VT++g +S +qG
gi|1874772 103 PGAVFNNSTHdGRSQLAGYILKNPKLGsGPPADSILAEVTSpGEPSRLQG 152
CS EEEEEE.S-EEEEEE-TT-EEEEEEEEESEEEEEEE-SEEEEETT
llevlGganAnVfLaNPNGIifgggAfiNvgglfvtTgaisikff<-*
+le++G ++A +++aNPNGI++++ +++N++ l+++Tg++ ++
gi|1874772 153 TLEIFG-KRAALIIANPNGISVDDLSTLNTRALTLSTGSVRHDNK 196
Bac_thur_toxin: domain 1 of 1, from 87 to 109: score 2.0, E = 3
*->sqPqskarvihlrvtdPssdtnl<-*
sq+ s+ r+ l ++ P+ n+
gi|1874772 87 SQGLSRNRFEKLDIEQPGAVFNN 109
Pterin_bind: domain 1 of 1, from 89 to 100: score 0.4, E = 9.9
CS EECCGHHCCHHT
*->GgSRKsfiglll<-*
G SR++f+ l+
gi|1874772 89 GLSRNRFEKLDI 100
Fil_haemagg: domain 1 of 12, from 160 to 211: score 1.3, E = 12
CS SEEEEEE-STT-EEEE-S-EEESSE...................EEE
*->nnggtlsagggltltaagllnnggtliaggdlllaagalrnggdltl
+++ ++++ +g++++ ++ln ++ ++++g +++++++l +
gi|1874772 160 RAALIIANPNGISVDDLSTLNTRALTLSTGSVRHDNKTL-----TLW 201
CS EESS-EEEEE
taaGdLdnsg<-*
t +G++d ++
gi|1874772 202 TQQGTIDIGA 211
DUF1363: domain 1 of 1, from 202 to 216: score 0.5, E = 6
*->msRHGniDiGCGAGnt<-*
G iDiG G nt
gi|1874772 202 -TQQGTIDIGAGGVNT 216
Calponin: domain 1 of 1, from 245 to 253: score 4.3, E = 7.3
*->lslQmGTNk<-*
l+lQ+G N+
gi|1874772 245 LRLQAGHNQ 253
Fil_haemagg: domain 2 of 12, from 247 to 323: score 1.5, E = 10
CS EEESSEEEETT TT--EE-SEEEEEE-STT-EEEE-S-EEESS
*->vaaGaltlnaa.....alggldlnnggtlsagggltltaagllnngg
aG ++l+ +++ +al + +++ + ++sa++ + ++a++ +
gi|1874772 247 LQAGHNQLDLRsgqitALPTPAATPQTLISASALGAMHGAHIYIQ-- 291
CS E...................EEEEESS-EEEEE
tliaggdlllaagalrnggdltltaaGdLdnsg<-*
+++ag++++l+++ + ++ +++ a Gd+ ++
gi|1874772 292 ATDAGAGVRLQGSLRSPSD-IRVQANGDIVLAH 323
nsp9: domain 1 of 1, from 296 to 302: score -0.3, E = 5
CS HHHSBB-
*->gaTVRLQ<-*
ga VRLQ
gi|1874772 296 GAGVRLQ 302
ArabFuran-catal: domain 1 of 1, from 308 to 327: score -0.7, E = 4.6
*->PCDiYaaggtPCvAAHSTTR<-*
P Di ++ v AHST R
gi|1874772 308 PSDIRVQANGDIVLAHSTAR 327
Fil_haemagg: domain 3 of 12, from 325 to 383: score 1.4, E = 11
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
+a G+ + a+ + +l+++g++ +g +l+++ +g + +g+ a
gi|1874772 325 TARGNTFIKAG--QTVTLAQAGNIISGEALSIQTGGQVAFAGNAHAN 369
CS ...............EEEEES
gdlllaagalrnggdltltaa<-*
+ +a + l+lt+a
gi|1874772 370 TLHIQAQS-------LSLTSA 383
DUF2190: domain 1 of 1, from 328 to 351: score 1.3, E = 8.7
*->MKNYvQpGkTItvtAaaaAVaSGdg<-*
+++++ G T+t++ a ++ SG +
gi|1874772 328 GNTFIKAGQTVTLAQAG-NIISGEA 351
BPL_C: domain 1 of 1, from 333 to 354: score 3.9, E = 3.1
CS --SEEEEEES...TTEE.EEEEEEE
*->hsGkeVtltdgveggkvneGiavGI<-*
+ G++Vtl + g ++ G+a +I
gi|1874772 333 KAGQTVTLAQ--AGNII-SGEALSI 354
Fil_haemagg: domain 4 of 12, from 451 to 508: score 18.4, E = 0.00014
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
v G+ ++a+ + +n+g + + g l + +g l n g ++a+
gi|1874772 451 VRQGDAHIQAG----TLDNQGLLSVGGSELRIETRGELRNPGIISAQ 493
CS ...............EEEEESS-EEEEE
gdlllaagalrnggdltltaaGdLdnsg<-*
g+ ltl+++ +L+nsg
gi|1874772 494 GA-------------LTLATQQALHNSG 508
Fil_haemagg: domain 5 of 12, from 530 to 606: score 29.1, E = 1.2e-07
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
+ +G ltl+ + +l+n+gt++a+g l ++a+g n gtl +
gi|1874772 530 AFSGPLTLDLD----QTLDNTGTIDAAGELRIRARGGADNSGTLMGD 572
CS .............. .EEEEESS-EEEEE
gdlllaagalrngg.......dltltaaGdLdnsg<-*
+ l l+a++l n+g+ +++++ lt++ ++dL+n+g
gi|1874772 573 S-LSLQADTLHNTGelstghgRLTIDVQNDLRNTG 606
Pyocin_S: domain 1 of 1, from 530 to 550: score 3.1, E = 1.6
*->aLsppltadLnavAaakGTVd<-*
a s+plt dL++ ++ GT+d
gi|1874772 530 AFSGPLTLDLDQTLDNTGTID 550
OmpW: domain 1 of 1, from 551 to 560: score 0.3, E = 9.9
*->eaGdfiirar<-*
+aG+++irar
gi|1874772 551 AAGELRIRAR 560
PH_2: domain 1 of 1, from 553 to 563: score 1.0, E = 9.5
*->geLlkRtRkGd<-*
geL+ R+R+G+
gi|1874772 553 GELRIRARGGA 563
Fil_haemagg: domain 6 of 12, from 616 to 664: score 1.3, E = 12
CS EEE-S-EEESSE.................. .EEEEESS-EEE
*->ltaagllnnggtliaggdlllaagalrngg.....dltltaaGdLdn
l+aa++ n + + + g++l l a++l+n+g+ +++++l a +L n
gi|1874772 616 LRAASVRNGDQARLQGKTLALVAASLDNDGdiwgqNAALLAPQRLAN 662
CS EE
sg<-*
+g
gi|1874772 663 TG 664
GSPII_IJ: domain 1 of 1, from 628 to 639: score 3.0, E = 3.8
*->rLEeKtLAaWvA<-*
rL+ KtLA++ A
gi|1874772 628 RLQGKTLALVAA 639
Phage-MuB_C: domain 1 of 1, from 658 to 675: score 2.5, E = 6.6
CS -SS--SS--TTTTGGGTH
*->SRiAkrtaInktKKaDvq<-*
R+A++ In++++ D++
gi|1874772 658 QRLANTGHINAAEQLDIE 675
YCII: domain 1 of 1, from 686 to 711: score 2.3, E = 4.6
CS G-EEEEE-SCEEECCCSSSSGGCSEE
*->tAttLRksgGptldiDGpfaetKEqL<-*
t++++R++ G+ l+ DG + + E+L
gi|1874772 686 TGARVRFKTGADLVLDGHAPSATEFL 711
aPHC: domain 1 of 1, from 697 to 726: score -0.4, E = 8.2
*->elVrKGlkisTrYSLEllgPyVsiekdkkq<-*
+lV G +s L l P++ i+++ +q
gi|1874772 697 DLVLDGHAPSATEFLDLVAPRIQIQAPISQ 726
Fil_haemagg: domain 7 of 12, from 724 to 763: score 8.5, E = 0.1
CS EE-STT-EEEE-S-EE ESSE...................EEEEESS
*->lsagggltltaaglln.nggtliaggdlllaagalrnggdltltaaG
+s +++l l a++ + +n ++l +ggd ++l+a+
gi|1874772 724 ISQTATLRLEAKAGNIdNYAALESGGD-------------IILNAQA 757
CS -EEEEE
dLdnsg<-*
d+ n+
gi|1874772 758 DINNHD 763
GshA: domain 1 of 1, from 749 to 761: score 0.9, E = 2.6
*->EkillaaqadIEn<-*
+i+l+aqadI+n
gi|1874772 749 GDIILNAQADINN 761
Fil_haemagg: domain 8 of 12, from 769 to 806: score 1.7, E = 9.5
CS -STT-EEEE-S-EE ESSE...................EEEEESS-E
*->agggltltaaglln.nggtliaggdlllaagalrnggdltltaaGdL
a+++++l ++++ln+ +g + a ++ +++ aa L
gi|1874772 769 AQRNIGLKSQRILNhSHGLIYANAA-------------AAIQAAQLL 802
CS EEEE
dnsg<-*
+n +
gi|1874772 803 RNLS 806
MSP1_C: domain 1 of 1, from 804 to 825: score -1.6, E = 9
*->slgvraesEeeleasdfelekf<-*
+l r es ++ +++ le++
gi|1874772 804 NLSGRIESRGDMVIDTPKLENL 825
DUF2025: domain 1 of 1, from 828 to 844: score 4.0, E = 1.2
*->LkGFVGfnrKtGryivR<-*
L G VGfn KtG+ i R
gi|1874772 828 LTGSVGFNPKTGQQIGR 844
Fil_haemagg: domain 9 of 12, from 869 to 936: score 10.2, E = 0.032
CS EEESSEEEETTTT--EE-SEEEEEE-STT-EEEE-S-EEESSE....
*->vaaGaltlnaaalggldlnnggtlsagggltltaagllnnggtliag
v++ + ++g + +gg+ +++ ++ ln++++ +++
gi|1874772 869 VSS-------------LAVQQGVIHSGGNMDINQHRRLNQANQVLNQ 902
CS .............. .EEEEESS-EEEEE
gdlllaagalrngg......dltltaaGdLdnsg<-*
g l+ ++++ ++++ ++++ +++ ++ L n g
gi|1874772 903 GRLTTQGTQRIDADvrnqsfSRQISIQDYLKNIG 936
PPV_E2_C: domain 1 of 1, from 876 to 886: score 2.3, E = 7.9
CS TTSEEEEEEEE
*->ktvsvslGyMs<-*
++v +s G+M+
gi|1874772 876 QGVIHSGGNMD 886
COX4_pro_2: domain 1 of 1, from 880 to 890: score 2.0, E = 7.5
CS XX.X----TTTSS-HHHH
*->HHheapvevggeMDyaeh<-*
H+ gg MD+ +h
gi|1874772 880 HS-------GGNMDINQH 890
PAPA-1: domain 1 of 1, from 1027 to 1045: score 2.5, E = 4.1
*->fvsGpsGttlsfPedlglP<-*
f+ G G+t++f + l++
gi|1874772 1027 FKEGRRGSTMTFYPKLKTT 1045
LuxQ-periplasm: domain 1 of 1, from 1057 to 1067: score 0.4, E = 6.3
CS EE---------
*->svQdNqnVltL<-*
s+Q+ +nV tL
gi|1874772 1057 SLQNGENVTTL 1067
DUF1760: domain 1 of 1, from 1113 to 1149: score 0.7, E = 2.5
*->qvlLkeitdavknnilePlkdlcaafkadkeveegelpe<-*
q l+++++d vk ++ P k + f a +++++ e++
gi|1874772 1113 QALFETLIDGVKHRF--PTKEAMQNFLAQEAQRKAEEER 1149
NUFIP1: domain 1 of 1, from 1124 to 1148: score 4.5, E = 2.4
*->KKnyPTkanieeKKkaaeeerekrge<-*
K ++PTk+ +++ a e++r++++e
gi|1874772 1124 KHRFPTKEAMQN-FLAQEAQRKAEEE 1148
ORC2: domain 1 of 1, from 1129 to 1142: score -0.2, E = 8.5
*->skgeleklLeelle<-*
+k++++++L ++ +
gi|1874772 1129 TKEAMQNFLAQEAQ 1142
vATP-synt_E: domain 1 of 1, from 1136 to 1147: score -0.2, E = 10
*->fIrqEAeeKAee<-*
f qEA++KAee
gi|1874772 1136 FLAQEAQRKAEE 1147
Antimicrobial_7: domain 1 of 1, from 1227 to 1233: score 1.2, E = 9.3
*->eKiGatP<-*
eKiG tP
gi|1874772 1227 EKIGYTP 1233
ECH: domain 1 of 1, from 1340 to 1364: score 1.2, E = 7.1
CS ECHHHHHHHHSSEEEEETTTC--EC-G
*->lGGGlelALacDyrIAadnAkyvfGlp<-*
++GG+++A+ D+rI ++ ++++
gi|1874772 1340 AAGGAVMASGGDIRIVTEHGD--VMQN 1364
DUF2375: domain 1 of 1, from 1375 to 1387: score 2.5, E = 6.1
*->IAVlEGeikILNs<-*
I V EG++kI+Ns
gi|1874772 1375 IQVQEGDVKIINS 1387
AraC_binding: domain 1 of 1, from 1376 to 1416: score 1.4, E = 8.6
CS EE-TT-EEEE-TTS-EEEEE-TTSSEEEEEEEEE---GGGG
*->hlgpGdllLlpPgepHdgeadseergwryrwlyfepellee<-*
++ +Gd+ +++ +++H g+ +++ ++ r ly+ +++l++
gi|1874772 1376 QVQEGDVKIINSDHVHGGIQADQTAHLQGRNLYIKGGILRG 1416
Fil_haemagg: domain 10 of 12, from 1444 to 1539: score 6.0, E = 0.55
CS SEEEEEE-STT-EEEE-S-EEESSE..................
*->nnggtlsagggltltaagllnnggtliaggdlllaagalrngg....
+++ l a+++ltl a++ ln g+ ++g+ l l+a +l+ g+ ++
gi|1874772 1444 DHTTGLFAEQALTLKAGQHLNTLGASLSGQQLSLTAQTLNLGEvrei 1490
CS .EEEEESS-EEEEE
...................................dltltaaGdLdnsg<
+++++ + + + + + ++++++++++ +++ + +dl ++ a dL +g
gi|1874772 1491 sssqrleldlgllgaritqthqtrdqgagstlsarDLKIDVAQDLLMRG 1539
CS
-*
gi|1874772 - -
DUF1002: domain 1 of 1, from 1466 to 1484: score 1.6, E = 5.3
*->lGadLssnesQLPTkqemLke<-*
lGa+Ls +QL +++L++
gi|1874772 1466 LGASLS--GQQLSLTAQTLNL 1484
Fiji_64_capsid: domain 1 of 1, from 1524 to 1539: score -1.1, E = 8.2
*->madlridvaPdLihnG<-*
dl+idva dL+ G
gi|1874772 1524 ARDLKIDVAQDLLMRG 1539
His_biosynth: domain 1 of 1, from 1661 to 1670: score 0.9, E = 4.7
CS SHHHHTTSS-
*->GsAlyeGeit<-*
+sAl++G ++
gi|1874772 1661 ASALHDGNLS 1670
LacI: domain 1 of 1, from 1704 to 1718: score 4.2, E = 3
CS S-HHHHHHHCTS-HH
*->aTikDVArlAGVSka<-*
++ DVA AGV+++
gi|1874772 1704 SSLIDVATHAGVTAQ 1718
Fil_haemagg: domain 11 of 12, from 1747 to 1817: score 4.5, E = 1.4
CS EEESSEEEETT TT--EE-SEEEEEE-STT-EEE
*->vaaGaltlnaa..............alggldlnnggtlsagggltlt
+a ltl+a+ ++++++ +++ +++ +n++++s++g++ l
gi|1874772 1747 TAE--LTLSAGmeignskshyrrtaENTNVVGGNIRLVSNQGDIRLA 1791
CS E-S-EE ESSE...............
aaglln.nggtliaggdlllaagalr<-*
+++ +++ +li++ d++l+++ +
gi|1874772 1792 GTQFSGgQHVDLISARDIVLTSAKTN 1817
SNURF: domain 1 of 1, from 1756 to 1770: score 1.8, E = 8.6
*->mERaRDRLHLRRttE<-*
mE + + H RRt E
gi|1874772 1756 MEIGNSKSHYRRTAE 1770
Fil_haemagg: domain 12 of 12, from 1934 to 2003: score 3.4, E = 3
CS EEESSEEEETT TT--EE-SEEEEEE-STT-EEEE-S-EE E
*->vaaGaltlnaa......alggldlnnggtlsagggltltaaglln.n
+ G+lt n +++ ++ ++++ + +++ l+a+ +l+l+ +g
gi|1874772 1934 RTLGTLTFNLGgtarheHDNSALAKQIAGLAANDKLDLSVQGNARlT 1980
CS SSE...................EEEEESS-EEEEE
ggtliaggdlllaagalrnggdltltaaGdLdnsg<-*
gg ++a+g + ++ +G+L+++
gi|1874772 1981 GGEISAAGKG------------AKVDIKGTLSVAD 2003
DUF1525: domain 1 of 1, from 2154 to 2166: score 3.5, E = 2.4
*->aAevvVyTDsaHP<-*
+++v+ +++++HP
gi|1874772 2154 HINVTLVSYQRHP 2166
FCD: domain 1 of 1, from 2359 to 2369: score 0.6, E = 9.8
*->AraamreHlea<-*
+r+amr+H+e
gi|1874772 2359 VRKAMRAHMEL 2369
L27_2: domain 1 of 1, from 2495 to 2506: score 3.9, E = 2.6
CS XXXXXXXXXXXX
*->dkqraLQaleRL<-*
d +aLQ +eRL
gi|1874772 2495 DDLQALQSAERL 2506
KorB: domain 1 of 1, from 2505 to 2539: score 6.4, E = 0.47
*->raarkhPe..eVeaflieaaeageeeitRaqVkaLrrflkgkkkps<
r+a+khP+++e +++l ++ge i Ra+V ++kk p
gi|1874772 2505 RLADKHPAntELRQWL----ASGETKILRAAV-------NTKKGPV 2539
-*
gi|1874772 - -
TFIIA_gamma_C: domain 1 of 1, from 2576 to 2586: score 6.7, E = 0.98
CS EEEEEEEEEES
*->VdKvrIVACds<-*
V+K+ VACds
gi|1874772 2576 VSKLSLVACDS 2586
DUF1438: domain 1 of 1, from 2578 to 2603: score 5.2, E = 0.11
*->gLeletCDGGDCpDqDpasdsarhLG<-*
+L l+ CD G C qD s+ + L
gi|1874772 2578 KLSLVACDSGACSGQDLRSQVEQTLQ 2603
Diphthamide_syn: domain 1 of 1, from 2619 to 2629: score -0.4, E = 7.8
*->fPEGLlmyaek<-*
+PEG+++++ k
gi|1874772 2619 APEGHKIRVAK 2629
Ribosomal_S10: domain 1 of 1, from 2845 to 2863: score 5.9, E = 0.83
*->iriklkSydhklLesvvkf<-*
+r++lk+yd +++ ++v +
gi|1874772 2845 LRLRLKAYDNQNVLRAVLE 2863
DUF137: domain 1 of 1, from 2849 to 2865: score 1.8, E = 5.3
*->vaeYDNkevLreAlkeI<-*
++ YDN +vLr++l++
gi|1874772 2849 LKAYDNQNVLRAVLEDA 2865
Adeno_terminal: domain 1 of 1, from 2855 to 2871: score 0.8, E = 2.8
*->qdnnrRVraaAsrLRrqrrp<-*
q+++r+V+++A ++q rp
gi|1874772 2855 QNVLRAVLEDA---QMQARP 2871
BCAS2: domain 1 of 1, from 2867 to 2879: score 0.8, E = 6.8
*->leatPeaaaPWaagpdaevVDAL<-*
++a pda+ VDAL
gi|1874772 2867 MQA----------RPDAGMVDAL 2879
Keratin_assoc: domain 1 of 1, from 2922 to 2937: score 1.6, E = 4.9
*->aaagaplpkpaskkkR<-*
aa +ap+p pa+++kR
gi|1874772 2922 AAQAAPTPSPATGSKR 2937
GBP_repeat: domain 1 of 1, from 2978 to 3008: score 3.2, E = 3.1
*->qimkayAaDPEYRKHlevlykiLtntDpnde<-*
q++ ay +DP+ R+ + + +++ D ++
gi|1874772 2978 QVLAAYLSDPDNRRRFDFVMNYMEHRDLTEN 3008
DnaJ: domain 1 of 1, from 2984 to 2994: score 5.8, E = 0.5
CS CCHHHHHHHHH
*->LSDpekRaiYD<-*
LSDp+ R+++D
gi|1874772 2984 LSDPDNRRRFD 2994
Pyridoxal_deC: domain 1 of 1, from 3009 to 3019: score 0.2, E = 4.8
CS --S---....H
*->PgylrpGmell<-*
P+y++pGme +
gi|1874772 3009 PEYSIPGMEVI 3019
DUF1551: domain 1 of 1, from 3036 to 3073: score 1.6, E = 1.8
*->PnlatpgaptgasvPApevdcdssllahGitfGleyrF<-*
Pn t ap+ ++P+p+++ ++ la+ + +G e+ F
gi|1874772 3036 PNNWTVLAPEVRTQPEPRFNSTDVVLAQYLVAGSEHGF 3073
POPLD: domain 1 of 1, from 3038 to 3045: score 1.0, E = 2.3
*->gWdVilPw<-*
+W+V++P+
gi|1874772 3038 NWTVLAPE 3045
DUF1191: domain 1 of 1, from 3043 to 3050: score 0.3, E = 3.9
*->AtmTRTqP<-*
A+ +RTqP
gi|1874772 3043 APEVRTQP 3050
Transposase_11: domain 1 of 1, from 3126 to 3170: score 0.6, E = 8.8
*->gervliiDsTlvrvhgkeapakgrhygkaandsiksnrakkdearwg
++++++iD+++v + ++ ++ ar+g
gi|1874772 3126 KPSGYAIDASDV-----KFAFDTS------------------QARAG 3149
ygggkyrpglKlhivvdtrgg<-*
g+y ++ + +++d+ ++
gi|1874772 3150 DALGNYLATPERRAAIDLLTQ 3170
DUF1508: domain 1 of 1, from 3169 to 3177: score 1.8, E = 9.3
*->dknGqfrFr<-*
+ +Gqf+Fr
gi|1874772 3169 TQSGQFYFR 3177
DUF1579: domain 1 of 1, from 3206 to 3216: score 5.6, E = 0.53
*->kqFMsAeYrRk<-*
+++M+A+YrR
gi|1874772 3206 TWIMQANYRRN 3216
Exon_PolB: domain 1 of 1, from 3258 to 3277: score 2.8, E = 1.6
*->lrdyLekekedkpHlqeFLqaw<-*
+ dyL e +d+p lqeFL++
gi|1874772 3258 TLDYL--EDTDAPDLQEFLEET 3277
SAM_2: domain 1 of 1, from 3262 to 3287: score 1.9, E = 8.4
CS CGHHCHHHHHHHHHHTTTSGGCHHHHH
*->veswslesvaeWLesiglegqYkdnFs<-*
e +++++++e+Le+ l g++++ ++
gi|1874772 3262 LEDTDAPDLQEFLEETPL-GKHTQHLL 3287
Exonuc_X-T_C: domain 1 of 1, from 3270 to 3297: score 3.0, E = 2.3
*->LenLaaehsddeekqalLqaLydYaqsL<-*
L++ ++e++ ++ q+lL L++++ L
gi|1874772 3270 LQEFLEETPLGKHTQHLLNGLQMHGTRL 3297
//