hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 188532172.fa
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Query sequence: gi|188532172|ref|YP_001905969.1|
Accession: [none]
Description: hypothetical protein ETA_00070 [Erwinia tasmaniensis]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Met_10 Met-10+ like-protein 4.3 0.083 1
Rotamase PPIC-type PPIASE domain 8.1 0.086 1
Mit_gmP Putative mitochondrial genome mainten 6.0 0.15 1
P30 Mycoplasma P30 protein 4.7 0.2 1
DUF1672 Protein of unknown function (DUF1672) 5.1 0.21 1
Plus-3 Plus-3 domain 4.7 1.2 1
VRR_NUC VRR-NUC domain 4.6 1.6 1
Bro-N BRO family, N-terminal domain 3.6 1.8 1
DUF1132 Protein of unknown function (DUF1132) 1.9 2.5 1
UPF0181 Uncharacterised protein family (UPF01 3.2 2.7 1
DUF2272 Uncharacterized protein conserved in 1.0 2.7 1
Corona_nucleoca Coronavirus nucleocapsid protein 1.2 3.3 1
APG5 Autophagy protein Apg5 0.4 4 1
Lipase3_N Lipase 3 N-terminal region 2.7 4.1 1
Acetate_kinase Acetokinase family 0.2 4.1 1
PMG PMG protein 0.5 4.2 1
Cytochrom_NNT NapC/NirT cytochrome c family, N-term 2.1 4.4 1
DUF2210 Uncharacterized conserved protein (DU 0.8 4.4 1
RTP801_C RTP801 C-terminal region 1.0 4.7 1
DUF1367 Protein of unknown function (DUF1367) 0.3 4.8 1
PWP2 Periodic tryptophan protein 2 WD repe 1.9 4.9 1
DUF1910 Domain of unknown function (DUF1910) 1.6 4.9 1
Glyco_hydro_39 Glycosyl hydrolases family 39 -0.2 5.3 1
DUF1398 Protein of unknown function (DUF1398) 1.0 5.4 1
DUF2064 Uncharacterized protein conserved in 2.8 5.4 1
NaeI Restriction endonuclease NaeI 0.4 5.6 1
Mac-1 Mac 1 0.3 5.6 1
Na_Ala_symp Sodium:alanine symporter family -0.4 6.3 1
YopE Yersinia virulence determinant (YopE) 2.5 6.4 1
Sas10_Utp3_C Sas10 C-terminal domain 2.6 6.6 1
BON Putative phospholipid-binding domain 2.8 7 1
Mer2 Mer2 0.8 7.2 1
EPTP EPTP domain 3.3 7.5 1
DUF1215 Protein of unknown function (DUF1215) 2.0 7.6 1
DUF1064 Protein of unknown function (DUF1064) -0.0 8.4 1
Pea-VEAacid Pea-VEAacid family 2.8 8.4 1
HTH_Mga M protein trans-acting positive regul 2.5 8.5 2
CelD_N N-terminal ig-like domain of cellulas 0.9 8.8 1
HyaE Hydrogenase-1 expression protein HyaE 0.4 9.4 1
Thg1 tRNAHis guanylyltransferase -0.9 9.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UPF0181 1/1 93 120 .. 25 52 .] 3.2 2.7
DUF1215 1/1 102 121 .. 1 21 [. 2.0 7.6
Mit_gmP 1/1 126 137 .. 1 12 [. 6.0 0.15
DUF2064 1/1 172 189 .. 118 137 .] 2.8 5.4
Thg1 1/1 180 192 .. 254 266 .] -0.9 9.5
NaeI 1/1 204 216 .. 297 309 .] 0.4 5.6
RTP801_C 1/1 218 225 .. 113 120 .] 1.0 4.7
DUF1064 1/1 253 262 .. 119 128 .] -0.0 8.4
Acetate_kinase 1/1 255 263 .. 389 397 .] 0.2 4.1
Met_10 1/1 275 287 .. 248 260 .] 4.3 0.083
Corona_nucleoca 1/1 323 337 .. 467 481 .] 1.2 3.3
Mer2 1/1 346 368 .. 204 226 .] 0.8 7.2
VRR_NUC 1/1 362 391 .. 1 32 [. 4.6 1.6
BON 1/1 364 390 .. 1 27 [. 2.8 7
P30 1/1 379 393 .. 227 241 .. 4.7 0.2
Pea-VEAacid 1/1 433 448 .. 1 15 [] 2.8 8.4
DUF1132 1/1 438 447 .. 91 100 .] 1.9 2.5
DUF2272 1/1 469 482 .. 146 159 .. 1.0 2.7
Glyco_hydro_39 1/1 482 503 .. 1 22 [. -0.2 5.3
YopE 1/1 534 548 .. 1 15 [. 2.5 6.4
HTH_Mga 1/2 576 589 .. 49 62 .] 1.0 23
DUF1910 1/1 581 597 .. 137 154 .] 1.6 4.9
Sas10_Utp3_C 1/1 594 602 .. 70 78 .] 2.6 6.6
Bro-N 1/1 655 673 .. 1 20 [. 3.6 1.8
Mac-1 1/1 658 666 .. 379 387 .] 0.3 5.6
PWP2 1/1 696 703 .. 1 8 [. 1.9 4.9
EPTP 1/1 719 728 .. 39 53 .] 3.3 7.5
Cytochrom_NNT 1/1 771 779 .. 180 188 .] 2.1 4.4
DUF2210 1/1 773 782 .. 246 255 .] 0.8 4.4
DUF1672 1/1 797 814 .. 1 18 [. 5.1 0.21
Lipase3_N 1/1 813 835 .. 6 28 .. 2.7 4.1
PMG 1/1 840 850 .. 215 225 .] 0.5 4.2
Na_Ala_symp 1/1 871 888 .. 437 458 .. -0.4 6.3
Plus-3 1/1 917 938 .. 1 23 [. 4.7 1.2
HTH_Mga 2/2 1044 1060 .. 47 62 .] 1.5 16
CelD_N 1/1 1120 1131 .. 88 107 .] 0.9 8.8
APG5 1/1 1372 1377 .. 1 6 [. 0.4 4
DUF1367 1/1 1489 1507 .. 139 157 .. 0.3 4.8
DUF1398 1/1 1647 1657 .. 112 122 .. 1.0 5.4
HyaE 1/1 1684 1700 .. 98 114 .] 0.4 9.4
Rotamase 1/1 1709 1721 .. 97 109 .] 8.1 0.086
Alignments of top-scoring domains:
UPF0181: domain 1 of 1, from 93 to 120: score 3.2, E = 2.7
*->AeGiSSGeAIaiVAqeLRekhkkenkta<-*
AeGi G A Aq LR + + n +
gi|1885321 93 AEGIAEGKALYRQAQSLRDAQNQTNPQP 120
DUF1215: domain 1 of 1, from 102 to 121: score 2.0, E = 7.6
*->LgrqiaarLldtsgdewPaPl<-*
L +++a++L d ++ P+Pl
gi|1885321 102 L-YRQAQSLRDAQNQTNPQPL 121
Mit_gmP: domain 1 of 1, from 126 to 137: score 6.0, E = 0.15
*->kiKmGfmMGsaV<-*
+ KmG+ MG+aV
gi|1885321 126 RSKMGLAMGAAV 137
DUF2064: domain 1 of 1, from 172 to 189: score 2.8, E = 5.4
*->lr.grlhpelrwpFegipWSt<-*
+++++ +++l F +i+W +
gi|1885321 172 MAnTPRPADL---FNDIAWQS 189
Thg1: domain 1 of 1, from 180 to 192: score -0.9, E = 9.5
*->dLItdeFwkehpe<-*
dL+ d+ w +hp
gi|1885321 180 DLFNDIAWQSHPA 192
NaeI: domain 1 of 1, from 204 to 216: score 0.4, E = 5.6
CS EE--TTS------
*->vvAvpdDPivplp<-*
+vA DPivp p
gi|1885321 204 AVAKTPDPIVPKP 216
RTP801_C: domain 1 of 1, from 218 to 225: score 1.0, E = 4.7
*->viKkKLYS<-*
viK+KLY
gi|1885321 218 VIKRKLYD 225
DUF1064: domain 1 of 1, from 253 to 262: score -0.0, E = 8.4
*->KytGitivev<-*
K tG ++++v
gi|1885321 253 KKTGEEWQIV 262
Acetate_kinase: domain 1 of 1, from 255 to 263: score 0.2, E = 4.1
CS --HHHHHHH
*->TNEElaIAr<-*
T+EE+ I++
gi|1885321 255 TGEEWQIVY 263
Met_10: domain 1 of 1, from 275 to 287: score 4.3, E = 0.083
*->dldklpkvgViHY<-*
++ k+++ ++ HY
gi|1885321 275 PGGKMYLLNIMHY 287
Corona_nucleoca: domain 1 of 1, from 323 to 337: score 1.2, E = 3.3
*->lveddtqvEiidEvd<-*
l++ + vE+i+E++
gi|1885321 323 LDGKEMNVELILEIN 337
Mer2: domain 1 of 1, from 346 to 368: score 0.8, E = 7.2
*->LlSlskDlhNiDLaLskRQaqlE<-*
+lS s Dlh i L+ + R + E
gi|1885321 346 MLSASLDLHSINLLSIQREGAIE 368
VRR_NUC: domain 1 of 1, from 362 to 391: score 4.6, E = 1.6
*->mregdievalvdalklkhgpilglprknwgkl<-*
+reg ie+ + + lk ++g ++++ ++ g++
gi|1885321 362 QREGAIENIIPEKLKIRNG--FVSVEVDGGEF 391
BON: domain 1 of 1, from 364 to 390: score 2.8, E = 7
*->tskieaaLaaspllpdsdieVtvengv<-*
+++ie +++ +++ + +++V+v++g+
gi|1885321 364 EGAIENIIPEKLKIRNGFVSVEVDGGE 390
P30: domain 1 of 1, from 379 to 393: score 4.7, E = 0.2
*->nGFvnvEKDGGnLKi<-*
nGFv vE DGG Ki
gi|1885321 379 NGFVSVEVDGGEFKI 393
Pea-VEAacid: domain 1 of 1, from 433 to 448: score 2.8, E = 8.4
*->LdLtP.GsHvDsYvEA<-*
+++tP+ s +Ds EA
gi|1885321 433 ITMTPdASNIDSVFEA 448
DUF1132: domain 1 of 1, from 438 to 447: score 1.9, E = 2.5
*->DninfddvFe<-*
D +n d+vFe
gi|1885321 438 DASNIDSVFE 447
DUF2272: domain 1 of 1, from 469 to 482: score 1.0, E = 2.7
*->SAAFISWVMRkAGL<-*
SA FIS V++kAGL
gi|1885321 469 SAEFISTVLTKAGL 482
Glyco_hydro_39: domain 1 of 1, from 482 to 503: score -0.2, E = 5.3
CS -EEEE--SS-..SSB--SG...
*->makaevpklvivdakrslRPln<-*
++k ++p l+++da s Pln
gi|1885321 482 LIKDKIPGLSRNDADLSPFPLN 503
YopE: domain 1 of 1, from 534 to 548: score 2.5, E = 6.4
*->EqLrknHarLAtGnG<-*
+ + +Ha LAtGnG
gi|1885321 534 NGKQIEHAMLATGNG 548
HTH_Mga: domain 1 of 2, from 576 to 589: score 1.0, E = 23
*->lFpeklsivikkgk<-*
+F +k++i+++k+k
gi|1885321 576 EFTDKILINSDKRK 589
DUF1910: domain 1 of 1, from 581 to 597: score 1.6, E = 4.9
*->ILLevdkdWrlkrLaali<-*
IL++ dk +k La+l+
gi|1885321 581 ILINSDKR-KFKLLAGLV 597
Sas10_Utp3_C: domain 1 of 1, from 594 to 602: score 2.6, E = 6.6
*->knvvKSvKl<-*
+++vKS+Kl
gi|1885321 594 AGLVKSTKL 602
Bro-N: domain 1 of 1, from 655 to 673: score 3.6, E = 1.8
*->evrtvvdingepWFvAkDvA<-*
++rt++ + + W++ +D+A
gi|1885321 655 PIRTFI-KGQDKWMNSEDFA 673
Mac-1: domain 1 of 1, from 658 to 666: score 0.3, E = 5.6
*->TLdkGqDsW<-*
T kGqD W
gi|1885321 658 TFIKGQDKW 666
PWP2: domain 1 of 1, from 696 to 703: score 1.9, E = 4.9
*->MAlRLNEe<-*
AlRLNEe
gi|1885321 696 FALRLNEE 703
EPTP: domain 1 of 1, from 719 to 728: score 3.3, E = 7.5
*->GdsqiyeHliykWdg<-*
G+s+ iyk+d+
gi|1885321 719 GGST-----IYKLDE 728
Cytochrom_NNT: domain 1 of 1, from 771 to 779: score 2.1, E = 4.4
*->IvAHqlPdm<-*
I+AH+lP++
gi|1885321 771 IRAHGLPMT 779
DUF2210: domain 1 of 1, from 773 to 782: score 0.8, E = 4.4
*->arGLpMqIvy<-*
a+GLpM +y
gi|1885321 773 AHGLPMTVNY 782
DUF1672: domain 1 of 1, from 797 to 814: score 5.1, E = 0.21
*->MfKriklIliaTllLsgC<-*
+K i lI i T++L +C
gi|1885321 797 IIKQIDLIKIETIILESC 814
Lipase3_N: domain 1 of 1, from 813 to 835: score 2.7, E = 4.1
CS XXXXXXXXXXXXXXXX.......
*->lalacarWaektstlsAvLqKRv<-*
+++++a++ ++++lsA+L K+v
gi|1885321 813 SCFGAAGYPSIGKSLSAILNKKV 835
PMG: domain 1 of 1, from 840 to 850: score 0.5, E = 4.2
*->GTyRPsCssgf<-*
GTyR +++ +
gi|1885321 840 GTYRTAYGADG 850
Na_Ala_symp: domain 1 of 1, from 871 to 888: score -0.4, E = 6.3
*->YaErNlvyLkrskprgvlFFly<-*
+aErN+ +++ k+rg+ y
gi|1885321 871 IAERNINFIR--KIRGIY--SY 888
Plus-3: domain 1 of 1, from 917 to 938: score 4.7, E = 1.2
*->ddlnllrLsRskveellkdpptF<-*
d+ +l+L+R++ e ++kd+++F
gi|1885321 917 -DVGRLVLGRKDTETFIKDNDFF 938
HTH_Mga: domain 2 of 2, from 1044 to 1060: score 1.5, E = 16
*->nel.Fpeklsivikkgk<-*
n+++Fp++++i++k ++
gi|1885321 1044 NDFgFPGDIFINTKGNR 1060
CelD_N: domain 1 of 1, from 1120 to 1131: score 0.9, E = 8.8
CS EEBXBXT.T.......XXXT
*->gYllvvgqgnVlsdlvekSd<-*
+Y+l++g g Sd
gi|1885321 1120 YYTLKTG-G-------RPSD 1131
APG5: domain 1 of 1, from 1372 to 1377: score 0.4, E = 4
*->WhyPvG<-*
W+yPvG
gi|1885321 1372 WSYPVG 1377
DUF1367: domain 1 of 1, from 1489 to 1507: score 0.3, E = 4.8
*->dlihlPDGvlRkeAkSIaF<-*
+ h PDG+ k+ k I++
gi|1885321 1489 HDWHFPDGTSNKHWKFISW 1507
DUF1398: domain 1 of 1, from 1647 to 1657: score 1.0, E = 5.4
*->YYtfDNsLLyi<-*
YY fDN L yi
gi|1885321 1647 YYCFDNRLFYI 1657
HyaE: domain 1 of 1, from 1684 to 1700: score 0.4, E = 9.4
*->dGrylGvLagirDWdEY<-*
+G+ +G La +W+EY
gi|1885321 1684 GGENRGTLADPKSWGEY 1700
Rotamase: domain 1 of 1, from 1709 to 1721: score 8.1, E = 0.086
CS ETTEEEEEEEE--
*->ksefGyHIIkvee<-*
ks++GyHI++ e+
gi|1885321 1709 KSGYGYHILQTEG 1721
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