hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 188532173.fa
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Query sequence: gi|188532173|ref|YP_001905970.1|
Accession: [none]
Description: hypothetical protein ETA_00080 [Erwinia tasmaniensis]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PrgH Type III secretion system protein Prg 3.0 0.071 2
Peptidase_S6 Immunoglobulin A1 protease 3.3 0.53 1
Plus-3 Plus-3 domain 5.8 0.55 1
DUF1673 Protein of unknown function (DUF1673) 4.4 0.7 1
Herpes_UL6 Herpesvirus UL6 like 2.3 1.1 1
UBA_2 Ubiquitin associated domain (UBA) 3.6 1.7 1
DUF1618 Protein of unknown function (DUF1618) 2.7 2.1 1
Bile_Hydr_Trans Acyl-CoA thioester hydrolase / Bile a 3.0 2.7 1
DFF-C DNA Fragmentation factor 45kDa, C ter 2.3 3.3 1
CcdA Post-segregation antitoxin CcdA 3.1 3.6 1
Cu_amine_oxidN1 Copper amine oxidase N-terminal domai 2.7 4.2 1
Phage_CRI Phage replication protein CRI 0.2 4.7 1
HyaE Hydrogenase-1 expression protein HyaE 1.1 5.7 1
Lg106 Lg106-like protein 1.3 6.1 1
PD40 WD40-like Beta Propeller Repeat 2.1 6.5 1
Nitrate_red_gam Nitrate reductase gamma subunit 0.2 6.5 1
Plasmid_stabil Plasmid stabilisation system protein 2.3 6.5 1
Transposase_33 Sulfolobus transposase 0.4 6.9 1
Phospholip_B Phospholipase B -1.0 7.2 1
eIF-4B Plant specific eukaryotic initiation -3.2 7.5 1
Viral_Rep_C Viral replication domain C-terminal 1.2 8 1
DUF2088 Uncharacterized conserved protein (DU 1.2 8.1 1
Cytochrom_NNT NapC/NirT cytochrome c family, N-term 1.1 8.2 1
Sod_Ni Nickel-containing superoxide dismutas 0.3 8.3 1
Nairo_nucleo Nucleocapsid N protein -1.7 9 1
FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase f 0.7 9.2 1
DIX DIX domain 0.9 9.4 1
DUF2210 Uncharacterized conserved protein (DU -0.3 9.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DIX 1/1 59 82 .. 63 87 .] 0.9 9.4
FAA_hydrolase 1/1 118 131 .. 241 254 .] 0.7 9.2
PD40 1/1 130 143 .. 22 41 .] 2.1 6.5
DUF2088 1/1 241 253 .. 1 13 [. 1.2 8.1
Bile_Hydr_Trans 1/1 315 327 .. 1 13 [. 3.0 2.7
Cytochrom_NNT 1/1 322 329 .. 181 188 .] 1.1 8.2
DUF2210 1/1 323 332 .. 246 255 .] -0.3 9.4
Plasmid_stabil 1/1 404 433 .. 1 38 [. 2.3 6.5
DUF1673 1/1 423 434 .. 1 12 [. 4.4 0.7
Herpes_UL6 1/1 426 440 .. 1 15 [. 2.3 1.1
Plus-3 1/1 466 487 .. 1 23 [. 5.8 0.55
Transposase_33 1/1 474 482 .. 168 176 .] 0.4 6.9
DFF-C 1/1 492 501 .. 164 173 .] 2.3 3.3
UBA_2 1/1 575 588 .. 45 58 .] 3.6 1.7
Nitrate_red_gam 1/1 601 608 .. 1 8 [. 0.2 6.5
Sod_Ni 1/1 604 610 .. 137 143 .] 0.3 8.3
Lg106 1/1 668 678 .. 1 11 [. 1.3 6.1
PrgH 1/2 860 868 .. 412 420 .] 3.0 0.071
eIF-4B 1/1 980 984 .. 617 621 .] -3.2 7.5
Phospholip_B 1/1 984 998 .. 716 738 .] -1.0 7.2
DUF1618 1/1 986 998 .. 145 159 .] 2.7 2.1
HyaE 1/1 1000 1015 .. 99 114 .] 1.1 5.7
Phage_CRI 1/1 1061 1074 .. 296 309 .] 0.2 4.7
Cu_amine_oxidN1 1/1 1068 1091 .. 71 94 .] 2.7 4.2
Nairo_nucleo 1/1 1123 1130 .. 437 444 .] -1.7 9
Viral_Rep_C 1/1 1223 1234 .. 114 125 .] 1.2 8
PrgH 2/2 1273 1281 .. 412 420 .] 0.0 0.89
CcdA 1/1 1318 1325 .. 65 72 .] 3.1 3.6
Peptidase_S6 1/1 1429 1478 .. 633 686 .. 3.3 0.53
Alignments of top-scoring domains:
DIX: domain 1 of 1, from 59 to 82: score 0.9, E = 9.4
*->EirdDsarLrPcfNgrvvswLvsve<-*
Ei+ ++ L ++++g +v++ + +
gi|1885321 59 EITNANQLL-KIKEGHIVIFTNTKD 82
FAA_hydrolase: domain 1 of 1, from 118 to 131: score 0.7, E = 9.2
CS EEETTTEEEEEEE-
*->veieGlGtLrntvv<-*
+++e+lGt+ nt+
gi|1885321 118 ITAEQLGTFDNTIF 131
PD40: domain 1 of 1, from 130 to 143: score 2.1, E = 6.5
*->vFssnrgdgddgsGsfdiyv<-*
+F+s+rg ++f iy
gi|1885321 130 IFTSKRG------EAFSIYS 143
DUF2088: domain 1 of 1, from 241 to 253: score 1.2, E = 8.1
*->YGkgtleldiPee<-*
YG+gt+ l +++e
gi|1885321 241 YGRGTFALRLNDE 253
Bile_Hydr_Trans: domain 1 of 1, from 315 to 327: score 3.0, E = 2.7
*->vDEpvrIrVsGLa<-*
vD ++r++GL+
gi|1885321 315 VDNILHVRAHGLP 327
Cytochrom_NNT: domain 1 of 1, from 322 to 329: score 1.1, E = 8.2
*->vAHqlPdm<-*
+AH+lP++
gi|1885321 322 RAHGLPMT 329
DUF2210: domain 1 of 1, from 323 to 332: score -0.3, E = 9.4
*->arGLpMqIvy<-*
a+GLpM I+
gi|1885321 323 AHGLPMTINH 332
Plasmid_stabil: domain 1 of 1, from 404 to 433: score 2.3, E = 6.5
CS --B-HHHHHHHHHHHT..........T.T--HHH...H
*->viwtprAlkDLkkiadyiaerdgpaaaerflkaleeal<-*
v++tp+ l L+ ia+ i a+r k +++++
gi|1885321 404 VVYTPTTLNSLENIASDI--------ADRNMKFIRKLM 433
DUF1673: domain 1 of 1, from 423 to 434: score 4.4, E = 0.7
*->ilvieqIkKLMG<-*
+++ + I+KLMG
gi|1885321 423 DRNMKFIRKLMG 434
Herpes_UL6: domain 1 of 1, from 426 to 440: score 2.3, E = 1.1
*->mlFfEILqGkygYvk<-*
m+F++ L+G y+Y++
gi|1885321 426 MKFIRKLMGIYSYFQ 440
Plus-3: domain 1 of 1, from 466 to 487: score 5.8, E = 0.55
*->ddlnllrLsRskveellkdpptF<-*
d+ +l+L+R+ +ee++kd +t+
gi|1885321 466 MDISRLVLGRKSIEEFIKD-NTV 487
Transposase_33: domain 1 of 1, from 474 to 482: score 0.4, E = 6.9
*->GKkSvETfi<-*
G+kS+E fi
gi|1885321 474 GRKSIEEFI 482
DFF-C: domain 1 of 1, from 492 to 501: score 2.3, E = 3.3
CS -HHHHHHHHT
*->SnqdLemVvk<-*
Sn+dLe++ k
gi|1885321 492 SNKDLELIYK 501
UBA_2: domain 1 of 1, from 575 to 588: score 3.6, E = 1.7
*->lNEIkDAYlLvkEN<-*
lNEI DA + kEN
gi|1885321 575 LNEISDAMGISKEN 588
Nitrate_red_gam: domain 1 of 1, from 601 to 608: score 0.2, E = 6.5
CS HHHHHHHH
*->mlgeiFwd<-*
++geiFwd
gi|1885321 601 FSGEIFWD 608
Sod_Ni: domain 1 of 1, from 604 to 610: score 0.3, E = 8.3
CS HHHHHHH
*->eiFWetK<-*
eiFW +K
gi|1885321 604 EIFWDDK 610
Lg106: domain 1 of 1, from 668 to 678: score 1.3, E = 6.1
*->kkKYGGLlpKK<-*
KYG L++KK
gi|1885321 668 EEKYGYLMLKK 678
PrgH: domain 1 of 2, from 860 to 868: score 3.0, E = 0.071
*->klnqghWYF<-*
k++ ++WYF
gi|1885321 860 KPSRHNWYF 868
eIF-4B: domain 1 of 1, from 980 to 984: score -3.2, E = 7.5
*->tReGW<-*
+R+GW
gi|1885321 980 ARQGW 984
Phospholip_B: domain 1 of 1, from 984 to 998: score -1.0, E = 7.2
*->WNFnfVtmKTPiRPSGGSNSWrl<-*
WNF fV m N W+
gi|1885321 984 WNFPFVAMD--------DNNWIY 998
DUF1618: domain 1 of 1, from 986 to 998: score 2.7, E = 2.1
*->yPlLSmeededgViY<-*
+P++ m++ ++ iY
gi|1885321 986 FPFVAMDD--NNWIY 998
HyaE: domain 1 of 1, from 1000 to 1015: score 1.1, E = 5.7
*->GrylGvLagirDWdEY<-*
G+ +G L + +W EY
gi|1885321 1000 GQSRGTLDSLKSWNEY 1015
Phage_CRI: domain 1 of 1, from 1061 to 1074: score 0.2, E = 4.7
*->EaksfnlvcdWskk<-*
Ea+ fn++++ ++
gi|1885321 1061 EAGTFNRPKQYVAE 1074
Cu_amine_oxidN1: domain 1 of 1, from 1068 to 1091: score 2.7, E = 4.2
CS ETTHHHHHHTSSS-.....TSEE-
*->PlrFlaEalgakVkwdsetktvqi<-*
P ++aE + +++ ++se +++i
gi|1885321 1068 PKQYVAEGMAGEIYYSSEYNSFYI 1091
Nairo_nucleo: domain 1 of 1, from 1123 to 1130: score -1.7, E = 9
*->feiqkiGy<-*
+e +k++y
gi|1885321 1123 IESPKTWY 1130
Viral_Rep_C: domain 1 of 1, from 1223 to 1234: score 1.2, E = 8
*->rGGKtqDilyqY<-*
+GGK +D+ Y
gi|1885321 1223 PGGKEDDVNWFY 1234
PrgH: domain 2 of 2, from 1273 to 1281: score 0.0, E = 0.89
*->klnqghWYF<-*
k++++ WYF
gi|1885321 1273 KPSDSDWYF 1281
CcdA: domain 1 of 1, from 1318 to 1325: score 3.1, E = 3.6
*->FaDEyRdf<-*
F+DE+ +f
gi|1885321 1318 FSDENQSF 1325
Peptidase_S6: domain 1 of 1, from 1429 to 1478: score 3.3, E = 0.53
*->kitagndlymiynnPYsktnrYyILks....gsytnaplpenisnsN
k+ g +y + ++++yIL+ +++++++ p+p ++ n+N
gi|1885321 1429 KGISGEIYY--CD----VQKAFYILRElgtpSISGW-PFP-SGKNNN 1467
aqWefvGktqe<-*
qW++ G +++
gi|1885321 1468 LQWIYAGRNKG 1478
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