hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 189347155.fa
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Query sequence: gi|189347155|ref|YP_001943684.1|
Accession: [none]
Description: Hemolysin-type calcium-binding region [Chlorobium limicola DSM 245]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HemolysinCabind Hemolysin-type calcium-binding repeat 373.3 5.4e-112 24
RyR RyR domain 6.2 0.52 1
Herpes_UL56 Herpesvirus UL56 protein 2.7 0.74 1
NOD NOTCH protein 3.7 4.5 1
CBM_5_12 Carbohydrate binding domain 4.0 5 1
Baculo_p48 Baculovirus P48 protein 0.9 5.1 1
Dimeth_Pyl Dimethylamine methyltransferase (Dime -0.7 5.5 1
F-box F-box domain 3.4 5.7 1
UPF0058 Uncharacterised protein family UPF005 1.3 6.2 1
DUF1630 Protein of unknown function (DUF1630) -1.0 6.8 1
DUF29 Domain of unknown function DUF29 0.8 7.6 1
TFIIIC_subunit TFIIIC subunit 2.8 8.2 1
Focal_AT Focal adhesion targeting region 0.2 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF1630 1/1 16 32 .. 652 668 .] -1.0 6.8
F-box 1/1 17 32 .. 1 16 [. 3.4 5.7
UPF0058 1/1 79 87 .. 1 13 [. 1.3 6.2
RyR 1/1 97 109 .. 83 95 .] 6.2 0.52
HemolysinCabind 1/24 165 182 .. 1 18 [] 9.2 0.13
HemolysinCabind 2/24 183 200 .. 1 18 [] 19.5 9.7e-05
NOD 1/1 186 197 .. 47 58 .] 3.7 4.5
HemolysinCabind 3/24 201 218 .. 1 18 [] 14.2 0.0039
HemolysinCabind 4/24 219 230 .. 1 12 [. 10.3 0.058
HemolysinCabind 5/24 243 256 .. 5 18 .] 15.5 0.0016
HemolysinCabind 6/24 257 274 .. 1 18 [] 15.8 0.0013
HemolysinCabind 7/24 275 292 .. 1 18 [] 21.6 2.2e-05
TFIIIC_subunit 1/1 289 302 .. 16 29 .. 2.8 8.2
HemolysinCabind 8/24 293 310 .. 1 18 [] 16.6 0.00074
HemolysinCabind 9/24 323 334 .. 7 18 .] 7.5 0.42
HemolysinCabind 10/24 335 352 .. 1 18 [] 20.9 3.8e-05
HemolysinCabind 11/24 353 370 .. 1 18 [] 10.4 0.057
HemolysinCabind 12/24 371 388 .. 1 18 [] 20.9 3.7e-05
DUF29 1/1 393 402 .. 1 10 [. 0.8 7.6
HemolysinCabind 13/24 409 426 .. 1 18 [] 20.0 6.6e-05
HemolysinCabind 14/24 427 444 .. 1 18 [] 20.2 5.9e-05
HemolysinCabind 15/24 445 462 .. 1 18 [] 13.2 0.008
Focal_AT 1/1 461 473 .. 1 13 [. 0.2 9.7
HemolysinCabind 16/24 508 525 .. 1 18 [] 4.0 4.8
HemolysinCabind 17/24 526 543 .. 1 18 [] 25.6 1.3e-06
HemolysinCabind 18/24 544 561 .. 1 18 [] 21.2 3e-05
HemolysinCabind 19/24 562 579 .. 1 18 [] 17.2 0.00048
HemolysinCabind 20/24 634 651 .. 1 18 [] 7.5 0.42
HemolysinCabind 21/24 652 669 .. 1 18 [] 21.4 2.5e-05
HemolysinCabind 22/24 670 687 .. 1 18 [] 17.7 0.00034
HemolysinCabind 23/24 688 705 .. 1 18 [] 22.0 1.7e-05
HemolysinCabind 24/24 713 723 .. 8 18 .] 0.9 41
Herpes_UL56 1/1 776 796 .. 1 20 [. 2.7 0.74
Dimeth_Pyl 1/1 778 794 .. 203 219 .. -0.7 5.5
CBM_5_12 1/1 786 802 .. 1 23 [. 4.0 5
Baculo_p48 1/1 812 821 .. 392 401 .] 0.9 5.1
Alignments of top-scoring domains:
DUF1630: domain 1 of 1, from 16 to 32: score -1.0, E = 6.8
*->eaiissLPdDLqqvLll<-*
e iis LPdD + v l+
gi|1893471 16 ERIISDLPDDARYVILS 32
F-box: domain 1 of 1, from 17 to 32: score 3.4, E = 5.7
CS -HHHHS-HHHHHHHHT
*->fslldLPdellleIls<-*
+ ++dLPd++ Ils
gi|1893471 17 RIISDLPDDARYVILS 32
UPF0058: domain 1 of 1, from 79 to 87: score 1.3, E = 6.2
*->MhGqFGKEELiqL<-*
h K+ELi+L
gi|1893471 79 LH----KDELIRL 87
RyR: domain 1 of 1, from 97 to 109: score 6.2, E = 0.52
*->LLayGynverade<-*
LL yG+n++ +d+
gi|1893471 97 LLLYGCNIGQGDK 109
HemolysinCabind: domain 1 of 24, from 165 to 182: score 9.2, E = 0.13
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G++G+D ++G +D l
gi|1893471 165 TGTDGDDFITGEWTDDYL 182
HemolysinCabind: domain 2 of 24, from 183 to 200: score 19.5, E = 9.7e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +GnD Ly +GnDt+
gi|1893471 183 FGLDGNDMLYSYEGNDTI 200
NOD: domain 1 of 1, from 186 to 197: score 3.7, E = 4.5
*->nGqpmIfPwyge<-*
+G++m + ++g+
gi|1893471 186 DGNDMLYSYEGN 197
HemolysinCabind: domain 3 of 24, from 201 to 218: score 14.2, E = 0.0039
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GG GnD ++Gg D+l
gi|1893471 201 EGGSGNDLIDGGLDHDLL 218
HemolysinCabind: domain 4 of 24, from 219 to 230: score 10.3, E = 0.058
CS E--SSS-EEEEE
*->yGGaGnDtLyGg<-*
yGG+G+Dt yGg
gi|1893471 219 YGGEGDDTVYGG 230
HemolysinCabind: domain 5 of 24, from 243 to 256: score 15.5, E = 0.0016
CS SS-EEEEESSCGEE
*->GnDtLyGgaGnDtl<-*
G+D++yG+aGnD l
gi|1893471 243 GDDSIYGDAGNDFL 256
HemolysinCabind: domain 6 of 24, from 257 to 274: score 15.8, E = 0.0013
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G G D+L+GgaG+D+l
gi|1893471 257 DGSYGQDILDGGAGDDIL 274
HemolysinCabind: domain 7 of 24, from 275 to 292: score 21.6, E = 2.2e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG G DtL+Gg+GnDtl
gi|1893471 275 HGGSGLDTLTGGNGNDTL 292
TFIIIC_subunit: domain 1 of 1, from 289 to 302: score 2.8, E = 8.2
*->gdkiyeGsweetiG<-*
+d++y G++++t+G
gi|1893471 289 NDTLYGGEYDDTLG 302
HemolysinCabind: domain 8 of 24, from 293 to 310: score 16.6, E = 0.00074
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yGG+ +DtL GgaGnD+l
gi|1893471 293 YGGEYDDTLGGGAGNDLL 310
HemolysinCabind: domain 9 of 24, from 323 to 334: score 7.5, E = 0.42
CS -EEEEESSCGEE
*->DtLyGgaGnDtl<-*
D L+G++G+Dtl
gi|1893471 323 DLLHGDDGDDTL 334
HemolysinCabind: domain 10 of 24, from 335 to 352: score 20.9, E = 3.8e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yGG+G D LyGg GnDtl
gi|1893471 335 YGGNGQDQLYGGIGNDTL 352
HemolysinCabind: domain 11 of 24, from 353 to 370: score 10.4, E = 0.057
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+G D L+Gg+ D l
gi|1893471 353 DGGDGSDMLDGGDDHDSL 370
HemolysinCabind: domain 12 of 24, from 371 to 388: score 20.9, E = 3.7e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G GnD + G aGnDtl
gi|1893471 371 DGSLGNDMIIGSAGNDTL 388
DUF29: domain 1 of 1, from 393 to 402: score 0.8, E = 7.6
*->LYEtDFylWt<-*
Y+ DF +W+
gi|1893471 393 VYDDDFQGWL 402
HemolysinCabind: domain 13 of 24, from 409 to 426: score 20.0, E = 6.6e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yG+ G D+L+GgaGnD+l
gi|1893471 409 YGDSGFDSLDGGAGNDLL 426
HemolysinCabind: domain 14 of 24, from 427 to 444: score 20.2, E = 5.9e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+ nDtL+GgaG+D l
gi|1893471 427 SGGEDNDTLSGGAGDDML 444
HemolysinCabind: domain 15 of 24, from 445 to 462: score 13.2, E = 0.008
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+G D+++Gg+G+Dt+
gi|1893471 445 DGGGGIDSMSGGSGDDTY 462
Focal_AT: domain 1 of 1, from 461 to 473: score 0.2, E = 9.7
*->TaeLDRsdDeVYe<-*
T +D s+D+VYe
gi|1893471 461 TYYIDNSKDTVYE 473
HemolysinCabind: domain 16 of 24, from 508 to 525: score 4.0, E = 4.8
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+ + ++G++ n+++
gi|1893471 508 TGNSAENNITGNDANNII 525
HemolysinCabind: domain 17 of 24, from 526 to 543: score 25.6, E = 1.3e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GGaGnD+L+G++GnD+l
gi|1893471 526 SGGAGNDVLTGNGGNDRL 543
HemolysinCabind: domain 18 of 24, from 544 to 561: score 21.2, E = 3e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G G+D+LyGg+GnDtl
gi|1893471 544 NGQTGDDVLYGGGGNDTL 561
HemolysinCabind: domain 19 of 24, from 562 to 579: score 17.2, E = 0.00048
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+Gn tLyGg+GnD++
gi|1893471 562 NGGDGNETLYGGDGNDLY 579
HemolysinCabind: domain 20 of 24, from 634 to 651: score 7.5, E = 0.42
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+ ++++G +GnDtl
gi|1893471 634 TGNSAENSINGLGGNDTL 651
HemolysinCabind: domain 21 of 24, from 652 to 669: score 21.4, E = 2.5e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G aGnD+L GgaGnD+l
gi|1893471 652 NGAAGNDILLGGAGNDLL 669
HemolysinCabind: domain 22 of 24, from 670 to 687: score 17.7, E = 0.00034
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G GnD+L G +G+D+l
gi|1893471 670 EGVSGNDILLGEEGADIL 687
HemolysinCabind: domain 23 of 24, from 688 to 705: score 22.0, E = 1.7e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GG G D LyG+aG+Dtl
gi|1893471 688 KGGSGADALYGDAGDDTL 705
HemolysinCabind: domain 24 of 24, from 713 to 723: score 0.9, E = 41
CS EEEEESSCGEE
*->tLyGgaGnDtl<-*
+++Gg+G D+l
gi|1893471 713 VIDGGQGMDRL 723
Herpes_UL56: domain 1 of 1, from 776 to 796: score 2.7, E = 0.74
*->MAseA.aqpdAglwsagdafa<-*
M s A++ Ag wsagda++
gi|1893471 776 MGSSAdGVNFAGTWSAGDAVI 796
Dimeth_Pyl: domain 1 of 1, from 778 to 794: score -0.7, E = 5.5
*->sGADGvnFDttaAAGDg<-*
s ADGvnF t AGD+
gi|1893471 778 SSADGVNFAGTWSAGDA 794
CBM_5_12: domain 1 of 1, from 786 to 802: score 4.0, E = 5
CS --B--TTEEE-TT-EEEETTEEE
*->apaWqagtvYtgGdvVsYnGrnY<-*
a +W+ag d V ++G +Y
gi|1893471 786 AGTWSAG------DAVIHDGIAY 802
Baculo_p48: domain 1 of 1, from 812 to 821: score 0.9, E = 5.1
*->DislLLnknv<-*
Di++L++++v
gi|1893471 812 DITVLIQQSV 821
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