hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 189533727.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|189533727|ref|XP_682740.3|
Accession: [none]
Description: PREDICTED: similar to nasal embryonic LHRH factor [Danio rerio]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IQ IQ calmodulin-binding motif 8.0 0.35 2
DUF1921 Domain of unknown function (DUF1921) 2.3 2 1
Peptidase_M49 Peptidase family M49 0.5 2.8 1
PIP5K Phosphatidylinositol-4-phosphate 5-Ki 1.9 3.6 1
AMP_N Aminopeptidase P, N-terminal domain 2.1 3.9 1
DUF89 Protein of unknown function DUF89 0.5 4 1
TIR TIR domain 1.3 4.3 1
DUF2472 Protein of unknown function (DUF2742) 2.4 4.4 1
CDC73 RNA pol II accessory factor, Cdc73 fa 0.9 4.4 1
Etmic-2 Microneme protein Etmic-2 -1.4 5.6 1
DUF1757 Protein of unknown function (DUF1757) 0.8 5.9 1
Crisp Crisp 2.1 6 1
Chromadorea_ALT Chromadorea ALT protein 1.3 6.2 1
TP1 Nuclear transition protein 1 1.7 6.3 1
ApbE ApbE family 0.7 6.5 1
UPF0150 Uncharacterised protein family (UPF01 2.8 6.5 1
DUF1777 Protein of unknown function (DUF1777) 0.2 8 1
Nop Putative snoRNA binding domain 1.3 8.7 1
DUF483 Protein of unknown function (DUF483) 1.2 8.8 1
Peptidase_M66 Peptidase M66 -0.5 8.9 1
Shigella_OspC Shigella flexneri OspC protein -0.8 9.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Etmic-2 1/1 83 119 .. 1 35 [. -1.4 5.6
DUF1921 1/1 139 167 .. 1 28 [. 2.3 2
Crisp 1/1 266 272 .. 1 7 [. 2.1 6
DUF1777 1/1 294 301 .. 259 267 .] 0.2 8
DUF1757 1/1 315 333 .. 1 17 [. 0.8 5.9
IQ 1/2 326 344 .. 1 19 [. 1.4 33
IQ 2/2 349 363 .. 1 15 [. 6.7 0.88
Peptidase_M66 1/1 351 364 .. 318 331 .] -0.5 8.9
TP1 1/1 357 363 .. 48 54 .] 1.7 6.3
AMP_N 1/1 371 382 .. 1 12 [. 2.1 3.9
DUF483 1/1 371 386 .. 1 16 [. 1.2 8.8
Chromadorea_ALT 1/1 403 421 .. 64 83 .] 1.3 6.2
Shigella_OspC 1/1 467 501 .. 44 78 .. -0.8 9.1
Nop 1/1 475 499 .. 121 153 .] 1.3 8.7
DUF2472 1/1 480 501 .. 109 130 .] 2.4 4.4
ApbE 1/1 486 500 .. 1 15 [. 0.7 6.5
DUF89 1/1 528 563 .. 32 100 .. 0.5 4
TIR 1/1 530 545 .. 131 150 .] 1.3 4.3
CDC73 1/1 536 549 .. 301 314 .] 0.9 4.4
Peptidase_M49 1/1 570 580 .. 1 11 [. 0.5 2.8
PIP5K 1/1 583 598 .. 1 17 [. 1.9 3.6
UPF0150 1/1 592 607 .. 35 50 .] 2.8 6.5
Alignments of top-scoring domains:
Etmic-2: domain 1 of 1, from 83 to 119: score -1.4, E = 5.6
*->mARALsLv..ALGLLFsLPPssAvRtRvPGEDsFsPE<-*
+ sL+++ALGLL PP + R E sFs E
gi|1895337 83 ISTDASLInpALGLLEPPPPTTSSKSRLSLERSFSAE 119
DUF1921: domain 1 of 1, from 139 to 167: score 2.3, E = 2
CS TTSSSEEEEEE-SS-EE EEEES-----G
*->sGfsGLvatvsGsqqkL.lvAldsnlssP<-*
+G sG+ +t Gs+++L+l l ls P
gi|1895337 139 TGESGMLGTSRGSKENLeLEVLKEALSQP 167
Crisp: domain 1 of 1, from 266 to 272: score 2.1, E = 6
CS TTTXTTS
*->CgDCPsa<-*
C++CP+a
gi|1895337 266 CESCPGA 272
DUF1777: domain 1 of 1, from 294 to 301: score 0.2, E = 8
*->RPLPLDFna<-*
RP PL++++
gi|1895337 294 RP-PLERMC 301
DUF1757: domain 1 of 1, from 315 to 333: score 0.8, E = 5.9
*->sWF..kNfagfsqseielq<-*
sWF+++N++ f+ +++q
gi|1895337 315 SWFpkENMFSFQTATTTMQ 333
IQ: domain 1 of 2, from 326 to 344: score 1.4, E = 33
CS HHHCHHHHHHHHHHHHHHH
*->rraaikIQaawRGylaRkr<-*
+ a +++Qa++R R+r
gi|1895337 326 QTATTTMQAVFRSLAERQR 344
IQ: domain 2 of 2, from 349 to 363: score 6.7, E = 0.88
CS HHHCHHHHHHHHHHH
*->rraaikIQaawRGyl<-*
++a +IQ+ +R +l
gi|1895337 349 VESAAIIQRNFRKHL 363
Peptidase_M66: domain 1 of 1, from 351 to 364: score -0.5, E = 8.9
*->eaakIQrwlknrav<-*
+aa+IQr++++ +
gi|1895337 351 SAAIIQRNFRKHLR 364
TP1: domain 1 of 1, from 357 to 363: score 1.7, E = 6.3
*->RnyRsHL<-*
Rn+R HL
gi|1895337 357 RNFRKHL 363
AMP_N: domain 1 of 1, from 371 to 382: score 2.1, E = 3.9
*->ipadefaaRRkr<-*
++a+ fa+RR++
gi|1895337 371 MKAQTFAERRAK 382
DUF483: domain 1 of 1, from 371 to 386: score 1.2, E = 8.8
*->ldvQIfikkrykpkvR<-*
++ Q f +r+k++ R
gi|1895337 371 MKAQTFAERRAKSFNR 386
Chromadorea_ALT: domain 1 of 1, from 403 to 421: score 1.3, E = 6.2
*->ksgdkleyaYCtPrknWkCs<-*
k +++l+ + CtP++ +C+
gi|1895337 403 KDSGELQGTCCTPDEA-RCE 421
Shigella_OspC: domain 1 of 1, from 467 to 501: score -0.8, E = 9.1
*->DnAiPPvFY.HEHqsfFLDkFkEvvdEvsRYvHGsk<-*
D i P+ Y+HEH F D +E+ + Y Gsk
gi|1895337 467 DPSIIPILYdHEHAT-FDDILEEIEKRLTAYRRGSK 501
Nop: domain 1 of 1, from 475 to 499: score 1.3, E = 8.7
CS HHHHT-S--TH.......HHHHHHHHHHH----
*->iDafseepdssetvfGielreelekRlekleek<-*
+D + +d+ + ee+ekRl ++++
gi|1895337 475 YDHEHATFDD--------ILEEIEKRLTAYRRG 499
DUF2472: domain 1 of 1, from 480 to 501: score 2.4, E = 4.4
*->edgyndfeeypaqLnkyrklrv<-*
+++++++ee+++ L +yr++ +
gi|1895337 480 ATFDDILEEIEKRLTAYRRGSK 501
ApbE: domain 1 of 1, from 486 to 500: score 0.7, E = 6.5
*->ldriedqmStyrpdS<-*
l++ie+ +++yr +S
gi|1895337 486 LEEIEKRLTAYRRGS 500
DUF89: domain 1 of 1, from 528 to 563: score 0.5, E = 4
CS .....HHHHHHHHHHHH.HHHHHHH-TTGGG-...............
*->GeeaeeelkkileelaeglkaelqtdkplpplddgepDialWNefLe
+ e+ee+ ++ +++l++ +++ l++++ l ++
gi|1895337 528 KVEKEEDMSQFWKRLSR-FMSKLNPEPNLIHI--------------- 558
CS ............S--HHHHHHH
lelpregrsWfnapWLfaecyl<-*
++cy+
gi|1895337 559 -----------------MGCYV 563
TIR: domain 1 of 1, from 530 to 545: score 1.3, E = 4.3
CS SG.....GGCCHHHHHHHHH
*->dktersqsdrikfWkkalya<-*
+k+e d+++fWk++
gi|1895337 530 EKEE----DMSQFWKRLSRF 545
CDC73: domain 1 of 1, from 536 to 549: score 0.9, E = 4.4
*->sqfWetLEkfvrkr<-*
sqfW L +f+ k
gi|1895337 536 SQFWKRLSRFMSKL 549
Peptidase_M49: domain 1 of 1, from 570 to 580: score 0.5, E = 2.8
*->rkLFetvkeLi<-*
kLF++ k+L+
gi|1895337 570 EKLFQKLKNLM 580
PIP5K: domain 1 of 1, from 583 to 598: score 1.9, E = 3.6
CS HHHHSS--E.E----SS
*->lSlCsspllrElsspGk<-*
+S++ +++l Els +Gk
gi|1895337 583 YSVTFESPL-ELSAQGK 598
UPF0150: domain 1 of 1, from 592 to 607: score 2.8, E = 6.5
*->EAlenakEAlelhleg<-*
E+ + kE++e+++++
gi|1895337 592 ELSAQGKEMIEMYFDF 607
//