hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 190895183.fa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: gi|190895183|ref|YP_001985476.1|
Accession: [none]
Description: putative hemolysin-type calcium-binding protein [Rhizobium etli CIAT 652]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HemolysinCabind Hemolysin-type calcium-binding repeat 291.7 2.9e-87 21
DUF1522 Domain of Unknown Function (DUF1522) 13.8 0.0019 3
Drmip_Hesp Developmentally Regulated MAPK Intera 7.3 0.15 2
Syd Syd protein 5.2 0.37 1
FCD FCD domain 4.7 0.51 1
SGL SMP-30/Gluconolaconase/LRE-like regio 4.3 0.56 2
DUF2302 Uncharacterized conserved protein (DU 2.9 1.8 2
Toluene_X Outer membrane protein transport prot 0.9 2.7 1
BNIP3 BNIP3 2.4 3.2 1
DUF548 Protein of unknown function (DUF548) 1.4 3.4 1
YscJ_FliF_C Flagellar M-ring protein C-terminal 1.6 3.6 1
HMG-CoA_red Hydroxymethylglutaryl-coenzyme A redu -1.4 3.9 1
PA14_2 GLEYA domain 2.7 3.9 1
HMG_CoA_synt_N Hydroxymethylglutaryl-coenzyme A synt 0.9 3.9 1
DUF1631 Protein of unknown function (DUF1631) -0.6 4.1 1
DUF789 Protein of unknown function (DUF789) -0.4 4.1 1
PSK_trans_fac Rv0623-like transcription factor 2.3 4.7 2
DUF2125 Uncharacterized protein conserved in -0.5 4.7 1
Adeno_PX Adenovirus late L2 mu core protein (P 2.6 5.4 2
Peptidase_U32 Peptidase family U32 1.4 5.7 1
DUF1003 Protein of unknown function (DUF1003) 1.3 6.6 1
Rad9 Rad9 -0.3 7.1 1
DUF1565 Protein of unknown function (DUF1565) -0.6 7.3 1
Citrus_P18 Citrus tristeza virus P18 protein 0.1 7.8 1
MASE2 MASE2 domain 1.6 8 1
CHL4 Kinetochore protein CHL4 like -0.6 8.4 1
EST1_DNA_bind Est1 DNA/RNA binding domain 1.5 8.8 2
Neocarzinostat Neocarzinostatin family 0.5 9.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BNIP3 1/1 19 27 .. 214 222 .] 2.4 3.2
Peptidase_U32 1/1 156 177 .. 1 23 [. 1.4 5.7
DUF789 1/1 157 172 .. 1 16 [. -0.4 4.1
Syd 1/1 158 170 .. 166 178 .] 5.2 0.37
DUF1003 1/1 169 189 .. 89 110 .] 1.3 6.6
FCD 1/1 170 191 .. 103 124 .] 4.7 0.51
DUF1522 1/3 207 227 .. 98 118 .] 7.9 0.098
HemolysinCabind 1/21 316 333 .. 1 18 [] 7.3 0.49
MASE2 1/1 363 374 .. 82 93 .] 1.6 8
HMG-CoA_red 1/1 373 382 .. 207 216 .. -1.4 3.9
Toluene_X 1/1 376 401 .. 1 26 [. 0.9 2.7
DUF1522 2/3 377 385 .. 110 118 .] 3.6 1.7
Neocarzinostat 1/1 381 389 .. 105 113 .] 0.5 9.2
HemolysinCabind 2/21 428 444 .. 1 18 [] 4.4 3.6
HemolysinCabind 3/21 447 464 .. 1 18 [] 14.9 0.0023
DUF1565 1/1 449 461 .. 1 15 [. -0.6 7.3
HemolysinCabind 4/21 465 482 .. 1 18 [] 17.1 0.00052
CHL4 1/1 473 487 .. 547 562 .] -0.6 8.4
DUF1631 1/1 515 526 .. 863 874 .] -0.6 4.1
Adeno_PX 1/2 576 593 .. 27 44 .] 1.3 14
Drmip_Hesp 1/2 593 602 .. 102 111 .] 3.6 1.7
PA14_2 1/1 596 628 .. 101 134 .] 2.7 3.9
HemolysinCabind 5/21 600 617 .. 1 18 [] 16.9 0.0006
HemolysinCabind 6/21 618 635 .. 1 18 [] 17.1 0.00052
HemolysinCabind 7/21 643 657 .. 4 18 .] 0.4 60
DUF1522 3/3 657 665 .. 110 118 .] 2.4 3.6
HemolysinCabind 8/21 675 685 .. 8 18 .] 1.8 22
Adeno_PX 2/2 729 746 .. 27 44 .] 1.3 14
Drmip_Hesp 2/2 746 755 .. 102 111 .] 3.6 1.7
HemolysinCabind 9/21 753 770 .. 1 18 [] 23.8 4.6e-06
HemolysinCabind 10/21 771 788 .. 1 18 [] 20.9 3.6e-05
EST1_DNA_bind 1/2 786 799 .. 61 75 .] 0.8 15
HemolysinCabind 11/21 789 806 .. 1 18 [] 20.6 4.5e-05
PSK_trans_fac 1/2 805 814 .. 81 90 .] 1.1 10
HemolysinCabind 12/21 807 824 .. 1 18 [] 12.4 0.013
HemolysinCabind 13/21 833 843 .. 8 18 .] 4.0 4.8
HMG_CoA_synt_N 1/1 836 850 .. 160 174 .] 0.9 3.9
DUF2302 1/2 844 871 .. 224 297 .] 0.6 7.7
HemolysinCabind 14/21 854 868 .. 1 15 [. 3.8 5.7
SGL 1/2 855 868 .. 267 280 .] 3.5 0.94
Rad9 1/1 884 891 .. 291 298 .] -0.3 7.1
DUF2125 1/1 921 949 .. 108 138 .. -0.5 4.7
HemolysinCabind 15/21 947 964 .. 1 18 [] 20.1 6.4e-05
HemolysinCabind 16/21 965 982 .. 1 18 [] 19.0 0.00014
EST1_DNA_bind 2/2 980 993 .. 61 75 .] 0.8 15
HemolysinCabind 17/21 983 1000 .. 1 18 [] 20.6 4.5e-05
PSK_trans_fac 2/2 999 1008 .. 81 90 .] 1.1 10
HemolysinCabind 18/21 1001 1018 .. 1 18 [] 12.4 0.013
DUF2302 2/2 1043 1065 .. 235 297 .] 2.3 2.7
HemolysinCabind 19/21 1048 1062 .. 1 15 [. 7.5 0.43
SGL 2/2 1049 1062 .. 267 280 .] 0.8 5.5
HemolysinCabind 20/21 1141 1158 .. 1 18 [] 22.1 1.6e-05
HemolysinCabind 21/21 1159 1176 .. 1 18 [] 24.5 2.9e-06
Citrus_P18 1/1 1167 1177 .. 1 11 [. 0.1 7.8
DUF548 1/1 1170 1180 .. 85 95 .. 1.4 3.4
YscJ_FliF_C 1/1 1198 1208 .. 204 214 .] 1.6 3.6
Alignments of top-scoring domains:
BNIP3: domain 1 of 1, from 19 to 27: score 2.4, E = 3.2
*->LtTPsaSTy<-*
L+TP++S+y
gi|1908951 19 LSTPQTSSY 27
Peptidase_U32: domain 1 of 1, from 156 to 177: score 1.4, E = 5.7
*->leeleeylddLaelGvDAvIvsD<-*
+ le +l+ L+ +v+A+I+sD
gi|1908951 156 INDLETFLSALR-PEVEAIILSD 177
DUF789: domain 1 of 1, from 157 to 172: score -0.4, E = 4.1
*->sNLErFLestTPvVpa<-*
++LE FL++ P V+a
gi|1908951 157 NDLETFLSALRPEVEA 172
Syd: domain 1 of 1, from 158 to 170: score 5.2, E = 0.37
*->nLaeFLaaLePlv<-*
+L++FL aL+P v
gi|1908951 158 DLETFLSALRPEV 170
DUF1003: domain 1 of 1, from 169 to 189: score 1.3, E = 6.6
*->kldalreialgeeltrdqkrqe<-*
+++a+++ ++ge ++r+ r++
gi|1908951 169 EVEAIIL-SDGEPAIRQMARHL 189
FCD: domain 1 of 1, from 170 to 191: score 4.7, E = 0.51
*->ldAiragDaeaAraamreHlea<-*
++Ai+ D+e A + m +Hl
gi|1908951 170 VEAIILSDGEPAIRQMARHLST 191
DUF1522: domain 1 of 3, from 207 to 227: score 7.9, E = 0.098
*->GaLtLststgADLsItGtgdl<-*
G+ +s++t + L I+G +d
gi|1908951 207 GQIRFSSGTVSELDIAGSTDI 227
HemolysinCabind: domain 1 of 21, from 316 to 333: score 7.3, E = 0.49
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+ +aG D GgaG+Dt+
gi|1908951 316 SATAGQDNQVGGAGADTF 333
MASE2: domain 1 of 1, from 363 to 374: score 1.6, E = 8
*->FnaLPSvtiLaM<-*
F++LP+ +L+M
gi|1908951 363 FSVLPASSLLSM 374
HMG-CoA_red: domain 1 of 1, from 373 to 382: score -1.4, E = 3.9
*->DMeviSlSGN<-*
+Me++S+SGN
gi|1908951 373 SMEILSISGN 382
Toluene_X: domain 1 of 1, from 376 to 401: score 0.9, E = 2.7
CS XXXXXXXXXXXX-TTC---S-CCHHH
*->lllasgqalAagfqlneqSagGlGRA<-*
+l++sg+ A +f n ++a+Gl+++
gi|1908951 376 ILSISGNGTAVTFNANQFGASGLSSS 401
DUF1522: domain 2 of 3, from 377 to 385: score 3.6, E = 1.7
*->LsItGtgdl<-*
LsI+G+g++
gi|1908951 377 LSISGNGTA 385
Neocarzinostat: domain 1 of 1, from 381 to 389: score 0.5, E = 9.2
CS EE.EEE-B-
*->geGvAIsFg<-*
g+G A++F+
gi|1908951 381 GNGTAVTFN 389
HemolysinCabind: domain 2 of 21, from 428 to 444: score 4.4, E = 3.6
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+G + G++GnD++
gi|1908951 428 FGGNGS-SAWGNSGNDII 444
HemolysinCabind: domain 3 of 21, from 447 to 464: score 14.9, E = 0.0023
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+ G Dt++G + +D++
gi|1908951 447 NGTSGADTITGSSSADII 464
DUF1565: domain 1 of 1, from 449 to 461: score -0.6, E = 7.3
*->vsGnDssnpGTnksa<-*
+sG+D + +G+ +sa
gi|1908951 449 TSGAD-TITGS-SSA 461
HemolysinCabind: domain 4 of 21, from 465 to 482: score 17.1, E = 0.00052
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG G DtL Gg+G+Dt+
gi|1908951 465 TGGSGVDTLAGGGGDDTF 482
CHL4: domain 1 of 1, from 473 to 487: score -0.6, E = 8.4
*->lTIGEeGvssgvvrdG<-*
l+ G G++ +vv++G
gi|1908951 473 LA-GGGGDDTFVVNNG 487
DUF1631: domain 1 of 1, from 515 to 526: score -0.6, E = 4.1
*->aVirrLRkLqGa<-*
+++ +LR+L G+
gi|1908951 515 GTLTNLRTLNGS 526
Adeno_PX: domain 1 of 2, from 576 to 593: score 1.3, E = 14
*->AIGAiPGIAgvAiqAanl<-*
AI+A+ + Agv+i +++
gi|1908951 576 AISAAAALAGVVINLSSQ 593
Drmip_Hesp: domain 1 of 2, from 593 to 602: score 3.6, E = 1.7
*->QSeqFnVtgs<-*
QSe F++tgs
gi|1908951 593 QSEGFTITGS 602
PA14_2: domain 1 of 1, from 596 to 628: score 2.7, E = 3.9
*->dfsftspdgnaiattsGsakdvvsyfYsvdtstc<-*
+f++t+++g +t+ Gs d++++ + vdt
gi|1908951 596 GFTITGSSGADTITG-GSSADIITGGSGVDTLAG 628
HemolysinCabind: domain 5 of 21, from 600 to 617: score 16.9, E = 0.0006
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G G Dt++Gg+ +D++
gi|1908951 600 TGSSGADTITGGSSADII 617
HemolysinCabind: domain 6 of 21, from 618 to 635: score 17.1, E = 0.00052
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG G DtL Gg+G+Dt+
gi|1908951 618 TGGSGVDTLAGGGGDDTF 635
HemolysinCabind: domain 7 of 21, from 643 to 657: score 0.4, E = 60
CS SSS-EEEEESSCGEE
*->aGnDtLyGgaGnDtl<-*
aG +++GgaG++ l
gi|1908951 643 AGAESINGGAGANML 657
DUF1522: domain 3 of 3, from 657 to 665: score 2.4, E = 3.6
*->LsItGtgdl<-*
Ls++Gt+++
gi|1908951 657 LSVAGTNNF 665
HemolysinCabind: domain 8 of 21, from 675 to 685: score 1.8, E = 22
CS EEEEESSCGEE
*->tLyGgaGnDtl<-*
tL+G +G Dt
gi|1908951 675 TLSGSSGSDTV 685
Adeno_PX: domain 2 of 2, from 729 to 746: score 1.3, E = 14
*->AIGAiPGIAgvAiqAanl<-*
AI+A+ + Agv+i +++
gi|1908951 729 AISAAAALAGVVINLSSQ 746
Drmip_Hesp: domain 2 of 2, from 746 to 755: score 3.6, E = 1.7
*->QSeqFnVtgs<-*
QSe F++tgs
gi|1908951 746 QSEGFTITGS 755
HemolysinCabind: domain 9 of 21, from 753 to 770: score 23.8, E = 4.6e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G aG Dt++Gg+GnDtl
gi|1908951 753 TGSAGADTITGGGGNDTL 770
HemolysinCabind: domain 10 of 21, from 771 to 788: score 20.9, E = 3.6e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG GnDtL G +GnD l
gi|1908951 771 DGGSGNDTLVGAGGNDSL 788
EST1_DNA_bind: domain 1 of 2, from 786 to 799: score 0.8, E = 15
*->dkifssedipDrLvG<-*
d +f+s+ + D+L+G
gi|1908951 786 DSLFGSGGS-DVLIG 799
HemolysinCabind: domain 11 of 21, from 789 to 806: score 20.6, E = 4.5e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +G D+L Gg+GnD+l
gi|1908951 789 FGSGGSDVLIGGEGNDIL 806
PSK_trans_fac: domain 1 of 2, from 805 to 814: score 1.1, E = 10
*->llyDEmGlpa<-*
+lyDE+G++
gi|1908951 805 ILYDESGDDI 814
HemolysinCabind: domain 12 of 21, from 807 to 824: score 12.4, E = 0.013
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
y G+D+L+Gg+G+Dt
gi|1908951 807 YDESGDDILDGGNGDDTM 824
HemolysinCabind: domain 13 of 21, from 833 to 843: score 4.0, E = 4.8
CS EEEEESSCGEE
*->tLyGgaGnDtl<-*
+L+GgaGnD
gi|1908951 833 SLSGGAGNDAM 843
HMG_CoA_synt_N: domain 1 of 1, from 836 to 850: score 0.9, E = 3.9
*->GGaGavalliGpnAP<-*
GGaG a++ G+n
gi|1908951 836 GGAGNDAMWTGANMT 850
DUF2302: domain 1 of 2, from 844 to 871: score 0.6, E = 7.7
*->fp.r.taGsvngmLdgdgdgnagsgpPektqsPldepnvfaqFAqgl
+ + ++ Gsv dg+ +++
gi|1908951 844 WTgAnMTGSV------DGG---SDR---------------------- 859
nlFdsglevQkYqklWLDiLkigaGgllG<-*
D+L+ ++G l+G
gi|1908951 860 -----------------DVLFVTGGNLTG 871
HemolysinCabind: domain 14 of 21, from 854 to 868: score 3.8, E = 5.7
CS E--SSS-EEEEESSC
*->yGGaGnDtLyGgaGn<-*
+GG +D+L+ ++Gn
gi|1908951 854 DGGSDRDVLFVTGGN 868
SGL: domain 1 of 2, from 855 to 868: score 3.5, E = 0.94
*->GGpdldtLYvTSAr<-*
GG d+d L+vT +
gi|1908951 855 GGSDRDVLFVTGGN 868
Rad9: domain 1 of 1, from 884 to 891: score -0.3, E = 7.1
*->aefiLATl<-*
aef+L+T+
gi|1908951 884 AEFVLGTV 891
DUF2125: domain 1 of 1, from 921 to 949: score -0.5, E = 4.7
*->ASlvlgldgppdrlslviddltagarlegtg<-*
+Sl+l d+ + r+++v++d+tag+ + +tg
gi|1908951 921 GSLDL-SDELGLRSAVVTADATAGN-GITTG 949
HemolysinCabind: domain 15 of 21, from 947 to 964: score 20.1, E = 6.4e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+ G G+Dt++GgaGnDtl
gi|1908951 947 TTGVGDDTITGGAGNDTL 964
HemolysinCabind: domain 16 of 21, from 965 to 982: score 19.0, E = 0.00014
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG GnDtL G +G D l
gi|1908951 965 DGGSGNDTLVGAGGSDSL 982
EST1_DNA_bind: domain 2 of 2, from 980 to 993: score 0.8, E = 15
*->dkifssedipDrLvG<-*
d +f+s+ + D+L+G
gi|1908951 980 DSLFGSGGS-DVLIG 993
HemolysinCabind: domain 17 of 21, from 983 to 1000: score 20.6, E = 4.5e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +G D+L Gg+GnD+l
gi|1908951 983 FGSGGSDVLIGGEGNDIL 1000
PSK_trans_fac: domain 2 of 2, from 999 to 1008: score 1.1, E = 10
*->llyDEmGlpa<-*
+lyDE+G++
gi|1908951 999 ILYDESGDDI 1008
HemolysinCabind: domain 18 of 21, from 1001 to 1018: score 12.4, E = 0.013
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
y G+D+L+Gg+G+Dt
gi|1908951 1001 YDESGDDILDGGNGDDTM 1018
DUF2302: domain 2 of 2, from 1043 to 1065: score 2.3, E = 2.7
*->LdgdgdgnagsgpPektqsPldepnvfaqFAqglnlFdsglevQkYq
++g+ dg g+
gi|1908951 1043 MTGTVDGGSGR------------------------------------ 1053
klWLDiLkigaGgllG<-*
D+L+ ++G l+G
gi|1908951 1054 ----DVLFVTGGNLTG 1065
HemolysinCabind: domain 19 of 21, from 1048 to 1062: score 7.5, E = 0.43
CS E--SSS-EEEEESSC
*->yGGaGnDtLyGgaGn<-*
+GG G+D+L+ ++Gn
gi|1908951 1048 DGGSGRDVLFVTGGN 1062
SGL: domain 2 of 2, from 1049 to 1062: score 0.8, E = 5.5
*->GGpdldtLYvTSAr<-*
GG ++d L+vT +
gi|1908951 1049 GGSGRDVLFVTGGN 1062
HemolysinCabind: domain 20 of 21, from 1141 to 1158: score 22.1, E = 1.6e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+ G GnDt++GgaGnDtl
gi|1908951 1141 TTGVGNDTITGGAGNDTL 1158
HemolysinCabind: domain 21 of 21, from 1159 to 1176: score 24.5, E = 2.9e-06
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG GnDt++Gg GnDt+
gi|1908951 1159 DGGSGNDTISGGLGNDTF 1176
Citrus_P18: domain 1 of 1, from 1167 to 1177: score 0.1, E = 7.8
*->msGsLGnstHv<-*
+sG LGn t v
gi|1908951 1167 ISGGLGNDTFV 1177
DUF548: domain 1 of 1, from 1170 to 1180: score 1.4, E = 3.4
*->GLGRDAFVLAS<-*
GLG+D FV+A+
gi|1908951 1170 GLGNDTFVFAA 1180
YscJ_FliF_C: domain 1 of 1, from 1198 to 1208: score 1.6, E = 3.6
*->GDsvsVvnmpF<-*
GD +s++n++F
gi|1908951 1198 GDLISIANSAF 1208
//