hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 193606321.fa
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Query sequence: gi|193606321|ref|XP_001946936.1|
Accession: [none]
Description: PREDICTED: similar to NIMA-family kinase NERCC1, partial [Acyrthosiphon pisum]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Pkinase Protein kinase domain 196.0 1.1e-55 2
RCC1 Regulator of chromosome condensation 72.8 3.1e-20 3
Pkinase_Tyr Protein tyrosine kinase 53.4 1.6e-15 3
Phi-29_GP4 Phi-29-like late genes activator (ear 3.3 0.88 1
ATP_bind_1 Conserved hypothetical ATP binding pr 3.4 1 1
Peptidase_C7 Peptidase C7 family 2.0 1 1
Spore-coat_CotZ Spore coat protein Z 2.1 2 1
DUF2155 Uncharacterized protein conserved in 2.3 2.1 1
Flt3_lig flt3 ligand 1.1 2.4 1
Glyco_transf_20 Glycosyltransferase family 20 1.2 2.4 1
GDNF GDNF/GAS1 domain 2.1 3.1 1
IKI3 IKI3 family -0.7 3.5 1
Chordopox_E11 Chordopoxvirus E11 protein 1.0 4.5 1
Neur_chan_LBD Neurotransmitter-gated ion-channel li 2.0 4.8 1
Peptidase_C25_C Peptidase family C25, C terminal ig-l 1.8 5.5 1
Hira TUP1-like enhancer of split 1.8 5.5 1
TSA Type specific antigen -1.5 5.8 1
DUF1329 Protein of unknown function (DUF1329) -0.1 6.8 1
DUF2076 Uncharacterized protein conserved in -0.1 7.9 1
PEP-utilizers_C PEP-utilising enzyme, TIM barrel doma 0.2 7.9 1
CBM_X Putative carbohydrate binding domain 1.9 8.1 1
CFC Cripto_Frl-1_Cryptic (CFC) 2.4 8.7 1
DSBA DSBA-like thioredoxin domain 0.3 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Glyco_transf_20 1/1 12 22 .. 1 11 [. 1.2 2.4
ATP_bind_1 1/1 43 60 .. 244 261 .] 3.4 1
Chordopox_E11 1/1 64 78 .. 117 131 .] 1.0 4.5
DSBA 1/1 112 124 .. 205 217 .] 0.3 9.9
TSA 1/1 120 132 .. 530 542 .] -1.5 5.8
IKI3 1/1 135 143 .. 1085 1093 .] -0.7 3.5
Pkinase 1/2 176 236 .. 1 63 [. 41.7 1.3e-11
Pkinase_Tyr 1/3 176 236 .. 1 67 [. 16.7 9.4e-05
Peptidase_C25_C 1/1 199 209 .. 72 82 .] 1.8 5.5
DUF2076 1/1 212 219 .. 1 8 [. -0.1 7.9
Pkinase 2/2 238 411 .. 81 287 .] 154.3 1.2e-43
Pkinase_Tyr 2/3 238 307 .. 89 159 .. 31.4 4.5e-09
Spore-coat_CotZ 1/1 271 280 .. 167 176 .] 2.1 2
Pkinase_Tyr 3/3 335 354 .. 191 210 .. 5.2 0.22
DUF2155 1/1 340 346 .. 91 97 .] 2.3 2.1
Flt3_lig 1/1 367 381 .. 79 93 .. 1.1 2.4
Peptidase_C7 1/1 385 398 .. 254 267 .] 2.0 1
Neur_chan_LBD 1/1 386 405 .. 1 24 [. 2.0 4.8
PEP-utilizers_C 1/1 458 473 .. 352 367 .] 0.2 7.9
RCC1 1/3 479 529 .. 1 68 [] 15.2 0.0012
CBM_X 1/1 499 506 .. 60 67 .] 1.9 8.1
RCC1 2/3 532 581 .. 1 68 [] 27.4 3.5e-07
CFC 1/1 544 551 .. 1 9 [. 2.4 8.7
Phi-29_GP4 1/1 550 567 .. 111 128 .] 3.3 0.88
Hira 1/1 572 590 .. 20 38 .. 1.8 5.5
DUF1329 1/1 574 587 .. 367 381 .] -0.1 6.8
RCC1 3/3 584 633 .. 1 68 [] 30.2 5.8e-08
GDNF 1/1 629 642 .. 1 14 [. 2.1 3.1
Alignments of top-scoring domains:
Glyco_transf_20: domain 1 of 1, from 12 to 22: score 1.2, E = 2.4
CS -EEEEECC---
*->srlvvVsNrlp<-*
rl++VsNr p
gi|1936063 12 NRLLIVSNRAP 22
ATP_bind_1: domain 1 of 1, from 43 to 60: score 3.4, E = 1
*->reesmedLltlidealqy<-*
+++s +d+++++d+ +q+
gi|1936063 43 DTSSLDDIISKVDDKMQH 60
Chordopox_E11: domain 1 of 1, from 64 to 78: score 1.0, E = 4.5
*->ngyaviassnNrrfY<-*
+ +a+++ s+ +fY
gi|1936063 64 KSIAILVHSDETQFY 78
DSBA: domain 1 of 1, from 112 to 124: score 0.3, E = 9.9
CS TT.HHHHHHHHTH
*->GadrldtLadala<-*
G+ rld++ ++la
gi|1936063 112 GSSRLDFFNSRLA 124
TSA: domain 1 of 1, from 120 to 132: score -1.5, E = 5.8
*->naliAsagvRYnF<-*
n+ +As +vRY
gi|1936063 120 NSRLASSCVRYQL 132
IKI3: domain 1 of 1, from 135 to 143: score -0.7, E = 3.5
*->ALshLsecg<-*
AL+hL c+
gi|1936063 135 ALRHLTQCD 143
Pkinase: domain 1 of 2, from 176 to 236: score 41.7, E = 1.3e-11
CS EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEHHHCCCCCCHHHHH
*->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
y++++++G+G+fG+ + ++ + + +V++K+i+ + ++++ a++
gi|1936063 176 YQRIRTVGKGAFGVATLYRNTNKNNLVVIKQINMLDMTAQERQLALN 222
CS EHHHHHHHHHSSSSB-
lsEiqilkrLsHpNIv<-*
E+++l LsHp+I+
gi|1936063 223 --EAKVLSLLSHPYII 236
Pkinase_Tyr: domain 1 of 3, from 176 to 236: score 16.7, E = 9.4e-05
CS EEEEEEEEEETTEEEEEEEEECSTTSTEEEEEEEEESS SSHHHH..
*->ltlgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLke.gaseeeie
+ +++ G+GaFG+ +tl+ +++ V +K ++ + + +e
gi|1936063 176 YQRIRTVGKGAFGV---ATLY-RNTNKNNLVVIKQINMlDMTAQE-- 216
CS HHHHHHHHHHHHHHTCTTTB-
redFlrEAsiMkklGdHpNiV<-*
r+ l+EA++++ l +Hp i+
gi|1936063 217 RQLALNEAKVLSLL-SHPYII 236
Peptidase_C25_C: domain 1 of 1, from 199 to 209: score 1.8, E = 5.5
CS TB--EEEEEEE
*->NkltVIKqIkv<-*
N l VIKqI+
gi|1936063 199 NNLVVIKQINM 209
DUF2076: domain 1 of 1, from 212 to 219: score -0.1, E = 7.9
*->MtPqErqL<-*
Mt qErqL
gi|1936063 212 MTAQERQL 219
Pkinase: domain 2 of 2, from 238 to 411: score 154.3, E = 1.2e-43
CS --TS-..EEBHHHHHH..HHHHST---HHHHHHHHHHHHHHHHHHHH
*->ycegGLrvldLfdylsetrrkgpllfsedeakkialQilrgleYLHs
y++gG L +yl r+++ l +e+++ ++lQ+ ++++ +H+
gi|1936063 238 YADGG----TLAEYLI-GRNNNLL--PERQILEMFLQMSEAIQCIHQ 277
CS TTEE-S--SGGGEEEETTTEE--EEEE--GTT.E...E CSS C-S--S-
ngiiHRDLKPeNILldnngvvdaflKiaDFGlAkklst.sss.lttfvGT
++i+HRDLK N++l ++ ++ K++DFG++k + + ++ t+vGT
gi|1936063 278 RNILHRDLKTTNVFLTKKRQI----KLGDFGISKI--MtTKLqALTVVGT 321
CS GGGS-HHHHCCS-CTHHHHHHHHHHHHHHHHHHSS-TTSSSHHHHCCTHH
pwYmAPEvllggngygtkvDvWSlGvilyelltGkpPFsgevqdsldqlq
p+Y++PE + g+ y++k+D+W+lG+ilye+++ + F+ + + +
gi|1936063 322 PYYISPEMCE-GKQYDQKSDIWALGCILYEMASLQRTFDAS-----NLPA 365
CS HHSSHHH......TTS................HHHHHHHHHHT-SSGGGS
lirkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskR
li i + + ++p +s ++k+L++++L+kDP +R
gi|1936063 366 LIHFITK-EHFAPIPLCYS-------------LNLKKLVNDLLQKDPLRR 401
CS TTHHHHHTSGGG
ltaeeilqHPwf<-*
+ a +++ +
gi|1936063 402 PDANYLVET--V 411
Pkinase_Tyr: domain 2 of 3, from 238 to 307: score 31.4, E = 4.5e-09
CS ETTTEBHHHHHHHTTCTTTSHHHHHHHHHHHHHHHHHHHHHTTEECS
*->ymegGdLldfLrkhreggkLtlkdLlsfalQiAkGMeYLesknfvHR
y+ gG L ++L + +++ L+ ++l++ lQ +++ + +++n+ HR
gi|1936063 238 YADGGTLAEYLIGR-NNNLLPERQILEMFLQMSEAIQCIHQRNILHR 283
CS TSSGGGEEEETTTEEEE-STTTHE
DLAARNcLVsenlvVKIsDFGLaR<-*
DL + N+ +++++++K +DFG ++
gi|1936063 284 DLKTTNVFLTKKRQIKLGDFGISK 307
Spore-coat_CotZ: domain 1 of 1, from 271 to 280: score 2.1, E = 2
*->AIQCLrDvli<-*
AIQC+ ++i
gi|1936063 271 AIQCIHQRNI 280
Pkinase_Tyr: domain 3 of 3, from 335 to 354: score 5.2, E = 0.22
CS EHHHHHHHHHHHHHHHHHTT
*->FtskSDVWSFGVlLWEiftl<-*
+ kSD+W+ G L+E+ +l
gi|1936063 335 YDQKSDIWALGCILYEMASL 354
DUF2155: domain 1 of 1, from 340 to 346: score 2.3, E = 2.1
*->DVWVlrC<-*
D+W+l C
gi|1936063 340 DIWALGC 346
Flt3_lig: domain 1 of 1, from 367 to 381: score 1.1, E = 2.4
CS HGGGGGS--B---TT
*->iHFvtkCaFqPlPeC<-*
iHF+tk F P+P C
gi|1936063 367 IHFITKEHFAPIPLC 381
Peptidase_C7: domain 1 of 1, from 385 to 398: score 2.0, E = 1
*->llyqaisdlaekdP<-*
+l++ + dl+ kdP
gi|1936063 385 NLKKLVNDLLQKDP 398
Neur_chan_LBD: domain 1 of 1, from 386 to 405: score 2.0, E = 4.8
CS HHHHHHHHCHH.SSSSTTSXTTCS
*->eerLlddLlenvtgYdkrvRPven<-*
++L++dLl++ d++ RP +n
gi|1936063 386 LKKLVNDLLQK----DPLRRPDAN 405
PEP-utilizers_C: domain 1 of 1, from 458 to 473: score 0.2, E = 7.9
CS GGHHHHHHHHHHHCCH
*->ptsVpraRallaqlal<-*
p++V+++ +++ q ++
gi|1936063 458 PFRVQIVQLAVSQTHF 473
RCC1: domain 1 of 3, from 479 to 529: score 15.2, E = 0.0012
CS TSEEEEEEEEEETTSTTSSSTTSCEEETGGGGTHHHHEEEEE--B-S
*->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr
d ++++G + GqLG gee + P++v
gi|1936063 479 DYSIFTWGE--DKHGQLGHGEETPWKN----------DPQCV----- 508
CS GGSSSSCEEEEEEESSEEEEE
ssslsekVvsvasGgqHtval<-*
s l+ +v +G + v +
gi|1936063 509 VSLLDKHITQVGAGHNFSVFV 529
CBM_X: domain 1 of 1, from 499 to 506: score 1.9, E = 8.1
*->TrWrnDpv<-*
T+W+nDp
gi|1936063 499 TPWKNDPQ 506
RCC1: domain 2 of 3, from 532 to 581: score 27.4, E = 3.5e-07
CS TSEEEEEEEEEETTSTTSSSTTSCEEETGGGGTHHHHEEEEE--B-S
*->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr
G V + G g +G+LG g + s+ P+l+
gi|1936063 532 TGLVMTTGD--GKYGALGHGDWNSVSR-----------PKLI----- 560
CS GGSSSSCEEEEEEESSEEEEE
ssslsekVvsvasGgqHtval<-*
+ l ++Vv+ ++G++H++al
gi|1936063 561 DFLLKVDVVKISCGNYHLAAL 581
CFC: domain 1 of 1, from 544 to 551: score 2.4, E = 8.7
*->CGaipHGdW<-*
Ga++HGdW
gi|1936063 544 -GALGHGDW 551
Phi-29_GP4: domain 1 of 1, from 550 to 567: score 3.3, E = 0.88
*->nwsriskpkLrerrksMv<-*
+w +s+pkL + + +
gi|1936063 550 DWNSVSRPKLIDFLLKVD 567
Hira: domain 1 of 1, from 572 to 590: score 1.8, E = 5.5
*->cngsykLlclTskGlLyvW<-*
++g y+L +lT G Ly+W
gi|1936063 572 SCGNYHLAALTNEGQLYTW 590
DUF1329: domain 1 of 1, from 574 to 587: score -0.1, E = 6.8
*->GRYladgLdNEekkg<-*
G+Y++ +L+NE+ +
gi|1936063 574 GNYHLAALTNEG-QL 587
RCC1: domain 3 of 3, from 584 to 633: score 30.2, E = 5.8e-08
CS TSEEEEEEEEEETTSTTSSSTTSCEEETGGGGTHHHHEEEEE--B-S
*->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr
+G++Y++G+ g+ GqLGlg ++ P lv
gi|1936063 584 EGQLYTWGR--GNHGQLGLGNLQDCC-----------FPILV----- 612
CS GGSSSSCEEEEEEESSEEEEE
ssslsekVvsvasGgqHtval<-*
l+ek s +G t+++
gi|1936063 613 NWHLDEKIGSIKCGPECTAVI 633
GDNF: domain 1 of 1, from 629 to 642: score 2.1, E = 3.1
*->ClkAretCeadpsC<-*
C++++ C++ + C
gi|1936063 629 CTAVITDCQNVYAC 642
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