hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 194035340.fa
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Query sequence: gi|194035340|ref|XP_001926401.1|
Accession: [none]
Description: PREDICTED: similar to F-box only protein 16 [Sus scrofa]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RhoGEF RhoGEF domain 141.9 1.3e-41 1
F-box F-box domain 30.3 1.2e-07 2
PH PH domain 11.2 0.015 1
DUF2227 Uncharacterized metal-binding protein 7.3 0.041 1
Pox_P4A Poxvirus P4A protein 5.2 0.067 1
PsbI Photosystem II reaction centre I prot 6.5 0.41 1
ELK ELK domain 7.1 0.47 1
ANATO Anaphylotoxin-like domain 2.4 0.57 1
IL6 Interleukin-6/G-CSF/MGF family 4.6 0.57 1
CDRN Cysteine-rich D. radiodurans N termin 4.8 0.8 1
DUF1685 Protein of unknown function (DUF1685) 5.1 0.82 1
Radical_SAM_N Radical SAM N-terminal 2.7 1.1 1
TIP120 TATA-binding protein interacting (TIP 3.4 1.3 1
CDC73 RNA pol II accessory factor, Cdc73 fa 2.4 1.6 1
HTH_3 Helix-turn-helix 5.0 1.9 1
Jnk-SapK_ap_N JNK_SAPK-associated protein-1 2.5 2.4 1
Amidase_3 N-acetylmuramoyl-L-alanine amidase 1.8 2.4 1
Stb3 Putative Sin3 binding protein 2.4 2.9 1
mRNA_cap_enzyme mRNA capping enzyme, catalytic domain -0.7 2.9 1
TruD tRNA pseudouridine synthase D (TruD) 1.4 3.2 1
Baculo_helicase Baculovirus DNA helicase -1.4 3.7 1
DUF1284 Protein of unknown function (DUF1284) 1.4 3.8 1
ZipA_C ZipA, C-terminal FtsZ-binding domain 2.8 4 1
DWNN DWNN domain 2.3 4.1 1
MtrC Tetrahydromethanopterin S-methyltrans 0.5 4.4 1
DUF1601 Protein of unknown function (DUF1601) 3.5 4.5 1
Ufm1 Ubiquitin fold modifier 1 protein 2.2 4.6 1
Herpes_U5 Herpesvirus U5-like family 0.8 4.8 1
Mo25 Mo25-like 0.2 5.2 1
RPN7 26S proteasome subunit RPN7 1.7 5.2 1
Sperm_Ag_HE2 Sperm antigen HE2 2.1 5.6 1
GerE Bacterial regulatory proteins, luxR f 3.0 5.6 1
DUF1258 Protein of unknown function (DUF1258) 0.5 5.8 1
DUF2059 Uncharacterized protein conserved in 2.3 5.8 1
SKN1 Beta-glucan synthesis-associated prot -2.0 6 1
ChpXY CO2 hydration protein (ChpXY) -0.1 6.3 1
Mgm101p Mitochondrial genome maintenance MGM1 -1.0 6.3 1
FdhD-NarQ FdhD/NarQ family 1.0 6.6 1
SMI1_KNR4 SMI1 / KNR4 family 1.6 6.6 1
BAAT_C BAAT / Acyl-CoA thioester hydrolase C 1.1 6.8 1
TolA TolA protein -0.6 7.6 1
Ribosomal_S4e Ribosomal family S4e 1.8 8.1 1
DM4_12 DM4/DM12 family 1.4 8.1 1
Biliv-reduc_cat Biliverdin reductase, catalytic 1.3 8.5 1
Phospholip_A2_1 Phospholipase A2 1.0 9.1 1
Rep_N Rep protein catalytic domain like 0.1 9.1 1
Exo70 Exo70 exocyst complex subunit -0.3 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CDRN 1/1 47 58 .. 41 52 .] 4.8 0.8
PsbI 1/1 70 93 .. 1 24 [. 6.5 0.41
Baculo_helicase 1/1 74 86 .. 1271 1283 .] -1.4 3.7
F-box 1/2 76 123 .. 1 46 [] 29.7 1.8e-07
Mgm101p 1/1 103 109 .. 240 246 .] -1.0 6.3
DUF1284 1/1 114 123 .. 106 115 .] 1.4 3.8
GerE 1/1 152 160 .. 1 9 [. 3.0 5.6
MtrC 1/1 155 173 .. 265 283 .] 0.5 4.4
DUF1685 1/1 160 188 .. 1 29 [. 5.1 0.82
ZipA_C 1/1 171 190 .. 112 131 .] 2.8 4
Herpes_U5 1/1 192 210 .. 531 551 .] 0.8 4.8
mRNA_cap_enzyme 1/1 207 221 .. 200 213 .] -0.7 2.9
DM4_12 1/1 214 222 .. 97 105 .] 1.4 8.1
Mo25 1/1 241 254 .. 376 389 .] 0.2 5.2
DUF1258 1/1 282 291 .. 260 269 .] 0.5 5.8
FdhD-NarQ 1/1 286 311 .. 193 217 .. 1.0 6.6
Sperm_Ag_HE2 1/1 292 305 .. 61 74 .] 2.1 5.6
Radical_SAM_N 1/1 296 306 .. 344 354 .] 2.7 1.1
Rep_N 1/1 303 323 .. 113 133 .. 0.1 9.1
CDC73 1/1 368 385 .. 297 314 .] 2.4 1.6
DUF2227 1/1 422 443 .. 168 189 .. 7.3 0.041
BAAT_C 1/1 448 471 .. 214 237 .] 1.1 6.8
SMI1_KNR4 1/1 452 467 .. 127 142 .] 1.6 6.6
IL6 1/1 459 473 .. 140 154 .] 4.6 0.57
Biliv-reduc_cat 1/1 480 489 .. 1 11 [. 1.3 8.5
DUF1601 1/1 506 515 .. 28 37 .] 3.5 4.5
Amidase_3 1/1 509 521 .. 253 265 .] 1.8 2.4
SKN1 1/1 527 537 .. 1 11 [. -2.0 6
HTH_3 1/1 545 567 .. 37 59 .] 5.0 1.9
DUF2059 1/1 559 595 .. 1 45 [. 2.3 5.8
TruD 1/1 569 580 .. 464 475 .] 1.4 3.2
RhoGEF 1/1 571 754 .. 1 207 [] 141.9 1.3e-41
ChpXY 1/1 627 640 .. 375 388 .] -0.1 6.3
Ufm1 1/1 643 661 .. 58 76 .] 2.2 4.6
DWNN 1/1 650 662 .. 1 13 [. 2.3 4.1
Phospholip_A2_1 1/1 654 678 .. 100 127 .] 1.0 9.1
RPN7 1/1 664 682 .. 85 103 .. 1.7 5.2
Exo70 1/1 681 699 .. 380 401 .. -0.3 9.8
Stb3 1/1 696 708 .. 1 16 [. 2.4 2.9
TIP120 1/1 743 758 .. 182 197 .] 3.4 1.3
Jnk-SapK_ap_N 1/1 745 759 .. 145 159 .] 2.5 2.4
ELK 1/1 746 760 .. 8 22 .] 7.1 0.47
Pox_P4A 1/1 749 768 .. 1324 1343 .] 5.2 0.067
Ribosomal_S4e 1/1 784 802 .. 67 85 .] 1.8 8.1
ANATO 1/1 792 797 .. 33 38 .] 2.4 0.57
PH 1/1 816 900 .. 21 92 .] 11.2 0.015
TolA 1/1 836 856 .. 1 22 [. -0.6 7.6
F-box 2/2 837 857 .. 28 46 .] 0.6 36
Alignments of top-scoring domains:
CDRN: domain 1 of 1, from 47 to 58: score 4.8, E = 0.8
*->lChLFvKCsrld<-*
lC++F +Cs+ +
gi|1940353 47 LCTIFLRCSKSQ 58
PsbI: domain 1 of 1, from 70 to 93: score 6.5, E = 0.41
*->mltLkifvYavvilFvsLFiFGfL<-*
m + k+ +v+ F+sL+iF fL
gi|1940353 70 MQVAKVDFSTVLPRFISLYIFSFL 93
Baculo_helicase: domain 1 of 1, from 74 to 86: score -1.4, E = 3.7
*->kkDFntnvPkFKc<-*
k DF t+ P+F++
gi|1940353 74 KVDFSTVLPRFIS 86
F-box: domain 1 of 2, from 76 to 123: score 29.7, E = 1.8e-07
CS -HHHHS-HHHHHHHHTTS-HHHHHHHTTT-HHHHHHHCT- HHH HH
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
+ LP + l I+s+L+pkdl+++++VS+ w+ l + lw +k+
gi|1940353 76 DFSTVLPRFISLYIFSFLNPKDLCAAAQVSWPWKFLTEQDcLWMpKC 122
CS H
l<-*
+
gi|1940353 123 I 123
Mgm101p: domain 1 of 1, from 103 to 109: score -1.0, E = 6.3
*->qveYPYK<-*
qv+ P+K
gi|1940353 103 QVSWPWK 109
DUF1284: domain 1 of 1, from 114 to 123: score 1.4, E = 3.8
*->ggCeWlelGy<-*
++C W+++++
gi|1940353 114 QDCLWMPKCI 123
GerE: domain 1 of 1, from 152 to 160: score 3.0, E = 5.6
CS --SS-HHHH
*->ldsLspREr<-*
ld+L+pRE+
gi|1940353 152 LDWLTPREA 160
MtrC: domain 1 of 1, from 155 to 173: score 0.5, E = 4.4
*->lskrDAaaVvwsGllPKeE<-*
l+ r+AaaV ++ PK E
gi|1940353 155 LTPREAAAVYGTLNEPKTE 173
DUF1685: domain 1 of 1, from 160 to 188: score 5.1, E = 0.82
*->kvlvkqqssepaatreeawgRrrgqmlss<-*
v + ++ep+++ ee ++R+r + l++
gi|1940353 160 AAAVYGTLNEPKTEDEEVQERQREKHLRK 188
ZipA_C: domain 1 of 1, from 171 to 190: score 2.8, E = 4
CS EETTSSB--HHHHHHHHHHH
*->LDeqRniltaQrieaYrdri<-*
++e ++ +Qr+++ r++i
gi|1940353 171 KTEDEEVQERQREKHLRKII 190
Herpes_U5: domain 1 of 1, from 192 to 210: score 0.8, E = 4.8
*->eeravrqkleslrkrllprvy<-*
e +a+r+k +l+k ++p+v
gi|1940353 192 EKIALRKK--ELFKVRPPWVS 210
mRNA_cap_enzyme: domain 1 of 1, from 207 to 221: score -0.7, E = 2.9
CS ---SC EECCEEEE-
*->PYvpG.rdqnlLKWK<-*
P v+G+r++ l+K K
gi|1940353 207 PWVSGtRCSRLFKSK 221
DM4_12: domain 1 of 1, from 214 to 222: score 1.4, E = 8.1
*->CaalYasdC<-*
C++l++s+C
gi|1940353 214 CSRLFKSKC 222
Mo25: domain 1 of 1, from 241 to 254: score 0.2, E = 5.2
*->EKefiikqIesLpp<-*
EK++++ ++e+Lp+
gi|1940353 241 EKQLVLASLEALPK 254
DUF1258: domain 1 of 1, from 282 to 291: score 0.5, E = 5.8
*->hslvivmHvc<-*
+s+v+++H++
gi|1940353 282 SSHVLQPHLI 291
FdhD-NarQ: domain 1 of 1, from 286 to 311: score 1.0, E = 6.6
*->lrksfllvSGRiS.semvqKaaraGv<-*
l+ ++l S+Ri+ +emv ++r G+
gi|1940353 286 LQPHLILISSRIPaYEMVVSSVRTGI 311
Sperm_Ag_HE2: domain 1 of 1, from 292 to 305: score 2.1, E = 5.6
*->llirRiPyYqvvis<-*
l+ RiP Y+ v+s
gi|1940353 292 LISSRIPAYEMVVS 305
Radical_SAM_N: domain 1 of 1, from 296 to 306: score 2.7, E = 1.1
*->kIPAyemIKfS<-*
+IPAyem+ S
gi|1940353 296 RIPAYEMVVSS 306
Rep_N: domain 1 of 1, from 303 to 323: score 0.1, E = 9.1
CS HHHHHHHHHHHHTSTT---SS
*->yisqIrgklvkdvydgtspkI<-*
++s +r +++++vyd s+++
gi|1940353 303 VVSSVRTGIISVVYDYSSLTL 323
CDC73: domain 1 of 1, from 368 to 385: score 2.4, E = 1.6
*->ravvsqfWetLEkfvrkr<-*
r+ v+ fWe+L +v+
gi|1940353 368 RPEVRDFWEKLGSYVAPE 385
DUF2227: domain 1 of 1, from 422 to 443: score 7.3, E = 0.041
*->AGLelGawlHsIaDwvvsawkr<-*
AG +G+ H+++Dw++ +w+r
gi|1940353 422 AGIATGSYQHILSDWLGRPWER 443
BAAT_C: domain 1 of 1, from 448 to 471: score 1.1, E = 6.8
*->kaHAkAQedsWkkiqaFFkKhLgs<-*
+++++A++++W ++ F++ L s
gi|1940353 448 IYFSEAKLQAWSNLTDFLEDTLKS 471
SMI1_KNR4: domain 1 of 1, from 452 to 467: score 1.6, E = 6.6
*->deivvvAdSFeefLek<-*
+ + + ++++++fLe+
gi|1940353 452 EAKLQAWSNLTDFLED 467
IL6: domain 1 of 1, from 459 to 473: score 4.6, E = 0.57
CS HHHHHHHHHHHHHHH
*->rsLeeFLefslRAlR<-*
++L +FLe +l ++R
gi|1940353 459 SNLTDFLEDTLKSVR 473
Biliv-reduc_cat: domain 1 of 1, from 480 to 489: score 1.3, E = 8.5
*->dFKqLKrEveG<-*
FK LK+ ++G
gi|1940353 480 -FKDLKKNISG 489
DUF1601: domain 1 of 1, from 506 to 515: score 3.5, E = 4.5
*->FnpqeIaNtL<-*
+n qeIa++L
gi|1940353 506 LNNQEIAQAL 515
Amidase_3: domain 1 of 1, from 509 to 521: score 1.8, E = 2.4
CS HHHHHHHHHHHHH
*->qklAeAIakGIlr<-*
q +A+A+a+G+++
gi|1940353 509 QEIAQALADGLTE 521
SKN1: domain 1 of 1, from 527 to 537: score -2.0, E = 6
*->seRdLTeNaPk<-*
seR+ Te +P+
gi|1940353 527 SERNVTEDNPQ 537
HTH_3: domain 1 of 1, from 545 to 567: score 5.0, E = 1.9
CS SSTSBHHHHHHHHHHTTSHHHHH
*->krePsletlkklaeaLgvsldel<-*
k++P+ e ++kl++ L+++l+e
gi|1940353 545 KNDPNFELVVKLERKLQLDLAEK 567
DUF2059: domain 1 of 1, from 559 to 595: score 2.3, E = 5.8
*->qkanpnlpadiqevvekyalkalaarrkaleWdklkdemapiYak<-
+ +++l+++ + vv++ ++ +++ + + le ++ ++Yak
gi|1940353 559 KL-QLDLAEKRTSVVRELLQ-SERKYVQMLE------IVRDVYAK 595
*
gi|1940353 - -
TruD: domain 1 of 1, from 569 to 580: score 1.4, E = 3.2
*->TsvLREilktdp<-*
Tsv+RE+l ++
gi|1940353 569 TSVVRELLQSER 580
RhoGEF: domain 1 of 1, from 571 to 754: score 141.9, E = 1.3e-41
*->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
v++Ell++E+kYv+ Lei+++vy+kpLr+a +s +++L++ i++iF
gi|1940353 571 VVRELLQSERKYVQMLEIVRDVYAKPLRAALSSNRAILSAANIQIIF 617
sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
s+i i++++r+FL L +r++++ +a ++Gd+F+++
gi|1940353 618 SDILRILCLNRHFLE-DLRDRLQEW-----------GPAHCVGDIFIKF- 654
aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
++l+ Y+ + +n+p++ +++ek +++++p+F+ fl++ + ++t
gi|1940353 655 GSQLNTYTNFFNNYPVVLKTIEK--CREVIPAFRAFLKRHDKTVATK--- 699
davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda
l+L+ LLl P R Y+ LL L +htp+ ++ ++ dL a+d+
gi|1940353 700 ---MLSLPELLLHPSRRFEEYMHLLYALRLHTPA--EHVDRGDLTTAIDQ 744
lqdlaksiNe<-*
++ +i +
gi|1940353 745 IRKYKGYIEQ 754
ChpXY: domain 1 of 1, from 627 to 640: score -0.1, E = 6.3
*->NrayleaWmdRllt<-*
Nr +le dRl +
gi|1940353 627 NRHFLEDLRDRLQE 640
Ufm1: domain 1 of 1, from 643 to 661: score 2.2, E = 4.6
CS TTSBHHHHHHHT-SEEEEE
*->PaqsAGnvFLKHGsELRli<-*
Pa G +F+K Gs L
gi|1940353 643 PAHCVGDIFIKFGSQLNTY 661
DWNN: domain 1 of 1, from 650 to 662: score 2.3, E = 4.1
*->vyYKFkSqkdysr<-*
++ KF+Sq+++++
gi|1940353 650 IFIKFGSQLNTYT 662
Phospholip_A2_1: domain 1 of 1, from 654 to 678: score 1.0, E = 9.1
CS HHHTG-GG--GGGBTCGGCGSHSSHHHT
*->FarnlpnTYNkkywaYpsnicteeserC<-*
F l nTY + +Yp + t e+C
gi|1940353 654 FGSQL-NTYTNFFNNYPVVLKT--IEKC 678
RPN7: domain 1 of 1, from 664 to 682: score 1.7, E = 5.2
*->ffnDwdlVskyiekAksli<-*
ffn++++V+k iek+++ i
gi|1940353 664 FFNNYPVVLKTIEKCREVI 682
Exo70: domain 1 of 1, from 681 to 699: score -0.3, E = 9.8
*->VvPaYrrFlerygsslksgrtk<-*
V+Pa r+Fl r+ + ++ tk
gi|1940353 681 VIPAFRAFLKRHDKTVA---TK 699
Stb3: domain 1 of 1, from 696 to 708: score 2.4, E = 2.9
*->iTPamLaKfhLPelLl<-*
+ +mL+ LPelLl
gi|1940353 696 VATKMLS---LPELLL 708
TIP120: domain 1 of 1, from 743 to 758: score 3.4, E = 1.3
*->dknpvwsefvsqikkn<-*
d++++++ +++q+k n
gi|1940353 743 DQIRKYKGYIEQMKQN 758
Jnk-SapK_ap_N: domain 1 of 1, from 745 to 759: score 2.5, E = 2.4
*->LkkyvEyvErqkdei<-*
++ky+ y+E+ k i
gi|1940353 745 IRKYKGYIEQMKQNI 759
ELK: domain 1 of 1, from 746 to 760: score 7.1, E = 0.47
*->rKYsgylssLreEfs<-*
rKY+gy++++++ +
gi|1940353 746 RKYKGYIEQMKQNIN 760
Pox_P4A: domain 1 of 1, from 749 to 768: score 5.2, E = 0.067
*->RpYFnsmKKNLNmnDgsavS<-*
++Y ++mK N Nm+D ++
gi|1940353 749 KGYIEQMKQNINMKDQLSDI 768
Ribosomal_S4e: domain 1 of 1, from 784 to 802: score 1.8, E = 8.1
*->dlikvgDsilislpeqeIv<-*
+li+v D+ ++ + eI+
gi|1940353 784 YLIRVQDVAQLQCCDEEIS 802
ANATO: domain 1 of 1, from 792 to 797: score 2.4, E = 0.57
CS HHHHHH
*->AFlqCC<-*
A+lqCC
gi|1940353 792 AQLQCC 797
PH: domain 1 of 1, from 816 to 900: score 11.2, E = 0.015
CS EEEETTEEEEEESTT SSEEEEEEGGCEEEEEECST
*->fvLfddvLlyykdkk............skpkgsipLsgiqvtkvedn
++Lf+d Ll ++++++ +++++++++ s+ L + +++++d+
gi|1940353 816 LFLFNDALLVSSRGTshtpfertskstYRFIASVALHRLLIEDIPDS 862
CS TSTTEEEEEE TSEEEEEECSSHHHHHHHHHHHHHHHH
.krknvFeirt.dretlllqaeseeerkeWikaiqsair<-*
+ +n+F + + + +++ ++e e+++ W++ +q+ai+
gi|1940353 863 kYIRNAFILQGpKH-EWICATEVEDDKFLWLSVLQNAIK 900
TolA: domain 1 of 1, from 836 to 856: score -0.6, E = 7.6
CS XXXXXXXXXXXXXXXXXXXXXX
*->keqndklkrAiiISvvLHiiLi<-*
e+ +k + +i Sv+LH +Li
gi|1940353 836 -ERTSKSTYRFIASVALHRLLI 856
F-box: domain 2 of 2, from 837 to 857: score 0.6, E = 36
CS TT-HHHHHHHCT- HHH HHH
*->lVSkrwrslvdsl.lwk.kll<-*
++Sk+ ++++ s+ l++ +
gi|1940353 837 RTSKSTYRFIASVaLHRlLIE 857
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