hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 194226100.fa
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Query sequence: gi|194226100|ref|XP_001917575.1|
Accession: [none]
Description: PREDICTED: similar to nasal embryonic LHRH factor [Equus caballus]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IQ IQ calmodulin-binding motif 13.2 0.0097 2
PEGSRP Protein of unknown function (DUF1584) 5.2 1.7 1
UPF0547 Uncharacterised protein family UPF054 5.7 1.7 1
PRD PRD domain 3.7 2.6 1
SapA Saposin A-type domain 1.6 5.4 1
TIR TIR domain 0.9 5.4 1
Apo-CIII Apolipoprotein CIII (Apo-CIII) 1.7 5.8 1
c-SKI_SMAD_bind c-SKI Smad4 binding domain 1.6 6.1 1
NUP Purine nucleoside permease (NUP) -0.2 6.3 1
Orthopox_N1 Orthopoxvirus N1 protein 0.7 6.4 1
IFRD Interferon-related developmental regu -0.2 6.5 1
PSI Plexin repeat 1.7 7.6 1
IMPDH IMP dehydrogenase / GMP reductase dom 0.1 8.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SapA 1/1 5 16 .. 1 12 [. 1.6 5.4
PEGSRP 1/1 122 132 .. 1 12 [. 5.2 1.7
Apo-CIII 1/1 133 155 .. 1 24 [. 1.7 5.8
IMPDH 1/1 159 170 .. 360 371 .] 0.1 8.3
PSI 1/1 192 205 .. 50 63 .] 1.7 7.6
UPF0547 1/1 202 212 .. 1 11 [. 5.7 1.7
IQ 1/2 266 284 .. 1 19 [. 12.6 0.015
IQ 2/2 289 297 .. 1 9 [. 0.7 54
NUP 1/1 382 390 .. 1 9 [. -0.2 6.3
c-SKI_SMAD_bind 1/1 418 434 .. 82 98 .] 1.6 6.1
IFRD 1/1 419 430 .. 354 365 .] -0.2 6.5
PRD 1/1 423 435 .. 1 13 [. 3.7 2.6
TIR 1/1 470 485 .. 131 150 .] 0.9 5.4
Orthopox_N1 1/1 539 552 .. 100 113 .] 0.7 6.4
Alignments of top-scoring domains:
SapA: domain 1 of 1, from 5 to 16: score 1.6, E = 5.4
*->gpkkCawGPsvW<-*
+ +C++G+ W
gi|1942261 5 QTRRCTQGSGLW 16
PEGSRP: domain 1 of 1, from 122 to 132: score 5.2, E = 1.7
*->LAvgRkPpGeeP<-*
Av RkP Ge P
gi|1942261 122 -AVSRKPAGEGP 132
Apo-CIII: domain 1 of 1, from 133 to 155: score 1.7, E = 5.8
*->MQPRvLLvvaLLaLLasArAeeae<-*
QPRv + + aLL s+ Ae +e
gi|1942261 133 -QPRVYTISGEPALLPSPDAEAIE 155
IMPDH: domain 1 of 1, from 159 to 170: score 0.1, E = 8.3
CS ESHHHHCHHSSS
RF xxxxxxxxxxxx
*->itsAglrEshvH<-*
++++ ++E+h+H
gi|1942261 159 VKGQRQQEGHPH 170
PSI: domain 1 of 1, from 192 to 205: score 1.7, E = 7.6
CS ..B..TT-BCCCSS
*->dqwldwswsssqCp<-*
++w ++ + s+ Cp
gi|1942261 192 QSWAGSRQGSKECP 205
UPF0547: domain 1 of 1, from 202 to 212: score 5.7, E = 1.7
*->KtCPeCdaivp<-*
K+CP+C ++ p
gi|1942261 202 KECPGCAQLAP 212
IQ: domain 1 of 2, from 266 to 284: score 12.6, E = 0.015
CS HHHCHHHHHHHHHHHHHHH
*->rraaikIQaawRGylaRkr<-*
+ a +++Qa++RGy Rkr
gi|1942261 266 HTATTTMQAVFRGYAERKR 284
IQ: domain 2 of 2, from 289 to 297: score 0.7, E = 54
CS HHHCHHHHH
*->rraaikIQa<-*
++a++IQ+
gi|1942261 289 NDSATVIQR 297
NUP: domain 1 of 1, from 382 to 390: score -0.2, E = 6.3
*->iqpKVmvIt<-*
+pKVm+I+
gi|1942261 382 LPPKVMLIS 390
c-SKI_SMAD_bind: domain 1 of 1, from 418 to 434: score 1.6, E = 6.1
CS CHHHHHHHHHHHHCC--
*->eeakLeqvLeevkekFd<-*
e+a+ e +Lee++ k +
gi|1942261 418 EHATFEDILEEIEKKLN 434
IFRD: domain 1 of 1, from 419 to 430: score -0.2, E = 6.5
*->RstFRDVlrfvE<-*
++tF D+l+ +E
gi|1942261 419 HATFEDILEEIE 430
PRD: domain 1 of 1, from 423 to 435: score 3.7, E = 2.6
CS HHHHHHHHHHHTS
*->eelleeiekklqi<-*
e++leeiekkl+i
gi|1942261 423 EDILEEIEKKLNI 435
TIR: domain 1 of 1, from 470 to 485: score 0.9, E = 5.4
CS SG.....GGCCHHHHHHHHH
*->dktersqsdrikfWkkalya<-*
+k+e d+i+fWk++
gi|1942261 470 EKEE----DMIHFWKRLSRL 485
Orthopox_N1: domain 1 of 1, from 539 to 552: score 0.7, E = 6.4
*->rmiekyfddlmidl<-*
+mie+yfd + l
gi|1942261 539 QMIETYFDFRLYRL 552
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