hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 194291994.fa
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Query sequence: gi|194291994|ref|YP_002007901.1|
Accession: [none]
Description: putative aspartate/glutamate/hydantoin racemase [Cupriavidus taiwanensis]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Asp_Glu_race Asp/Glu/Hydantoin racemase 23.4 8.1e-06 1
DUF936 Plant protein of unknown function (DU 3.5 0.27 1
PYNP_C Pyrimidine nucleoside phosphorylase C 7.7 0.29 1
NAD_binding_4 Male sterility protein 2.9 0.3 1
TrwC TrwC relaxase 3.8 0.35 1
FixO Cytochrome C oxidase, mono-heme subun 5.5 0.38 1
Phage-MuB_C Mu B transposition protein, C termina 6.8 0.41 1
Fibrillarin Fibrillarin 4.3 0.63 1
Peptidase_M30 Peptidase M30 3.7 0.67 1
G_glu_transpept Gamma-glutamyltranspeptidase 3.7 0.68 1
DUF1813 HSP20-like domain of unknown function 5.6 0.68 1
RHS_repeat RHS Repeat 6.0 0.74 1
RNA_capsid Calicivirus putative RNA polymerase/c 2.3 0.8 1
Cpl-7 Cpl-7 lysozyme C-terminal domain 5.8 0.89 1
Bac_DNA_binding Bacterial DNA-binding protein 5.1 0.89 1
VLPT Variable length PCR target protein (V 4.8 1.1 1
KR KR domain 3.5 1.2 1
DUF1814 Domain of unknown function (DUF1814) 2.9 1.2 1
DUF2399 Protein of unknown function (DUF2399) 2.1 1.3 1
AIRS AIR synthase related protein, N-termi 3.4 1.4 1
DUF2493 Protein of unknown function (DUF2493) 4.6 1.6 1
Phage_TAC Phage tail assembly chaperone 2.9 1.8 1
IgaA Intracellular growth attenuator prote 0.3 1.8 1
Ribonuc_red_2_N Class II vitamin B12-dependent ribonu 2.8 1.8 1
TFIIA Transcription factor IIA, alpha/beta -0.5 1.9 1
Herpes_UL49_1 UL49 family 2.8 2 1
Cm_res_leader Chloramphenicol resistance gene leade 5.6 2.1 2
Ten_N Teneurin Intracellular Region -1.4 2.1 1
Glutaminase Glutaminase 1.7 2.1 1
DUF1729 Domain of unknown function (DUF1729) 3.7 2.4 2
DUF1151 Protein of unknown function (DUF1151) 2.7 2.7 1
Methylase_S Type I restriction modification DNA s 2.9 2.9 1
DapD_N Tetrahydrodipicolinate succinyltransf 2.4 2.9 1
Ribosomal_L28e Ribosomal L28e protein family 2.5 3.1 1
RNA_polI_A34 DNA-directed RNA polymerase I subunit 2.0 3.3 1
Xlink Extracellular link domain -0.2 3.3 1
3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD 1.9 3.4 1
Nop Putative snoRNA binding domain 2.8 3.4 1
DUF570 Protein of unknown function (DUF570) 1.0 3.5 1
Mycoplasma_MAA2 Mycoplasma arthritidis MAA2 repeat 1.9 3.6 1
TarH Tar ligand binding domain homologue 2.7 3.8 1
Rsc14 RSC complex, Rsc14/Ldb7 subunit 1.4 4 1
Herpes_BFRF1 Gammaherpesvirus BFRF1 protein 1.3 4.1 1
Phage_lambd_GpG Bacteriophage lambda minor tail prote 1.4 4.1 1
DUF1895 Protein of unknown function (DUF1895) 1.8 4.2 1
OGFr_III Opioid growth factor receptor repeat 4.4 4.3 1
DUF2126 Uncharacterized protein conserved in 0.3 4.3 1
DUF752 Protein of unknown function (DUF752) 1.9 4.5 1
DUF336 Domain of unknown function (DUF336) 2.4 4.6 1
NAD_binding_3 Homoserine dehydrogenase, NAD binding 2.4 4.8 1
AlaDh_PNT_N Alanine dehydrogenase/PNT, N-terminal 0.9 4.9 1
Pal1 Pal1 cell morphology protein 1.6 5.1 1
DUF1929 Domain of unknown function (DUF1929) 1.0 5.2 1
DUF485 Protein of unknown function, DUF485 2.9 5.3 1
TOBE TOBE domain 3.2 5.3 1
TetR_C_3 YcdC-like protein, C-terminal region 2.2 5.6 1
NinB NinB protein 1.6 5.6 1
Talin_middle Talin, middle domain 0.6 5.7 1
IMS-faced Intermembrane space-Faced domain of T 3.4 5.7 1
Neocarzinostat Neocarzinostatin family 1.2 5.7 1
Allene_ox_cyc Allene oxide cyclase 0.2 5.8 1
DUF1434 Protein of unknown function (DUF1434) -0.1 5.9 1
Tape_meas_lam_C Lambda phage tail tape-measure protei 2.2 6.1 1
PAP1 Transcription factor PAP1 -0.0 6.2 1
DUF2236 Uncharacterized protein conserved in 1.0 6.3 1
tRNA_Me_trans tRNA methyl transferase -0.4 6.3 1
CNP1 CNP1-like family 1.4 6.3 1
CysG_dimeriser Sirohaem synthase dimerisation region 2.6 6.4 2
DUF1121 Protein of unknown function (DUF1121) 1.3 6.5 1
SepQ SepQ protein -1.4 6.6 1
Ligase_CoA CoA-ligase 1.9 6.7 1
Sre C. elegans Sre G protein-coupled chem 0.3 7.4 1
HS6ST Heparan sulfate 6-sulfotransferase (H -0.6 7.4 1
COLFI Fibrillar collagen C-terminal domain -1.2 7.5 1
PPC Bacterial pre-peptidase C-terminal do 1.9 7.6 1
DUF48 Protein of unknown function DUF48 0.3 7.6 1
Gly_reductase Glycine/sarcosine/betaine reductase c -1.1 7.7 1
Bac_rhodopsin Bacteriorhodopsin 0.2 7.8 1
DUF1778 Protein of unknown function (DUF1778) 2.2 8.1 1
QueT QueT transporter 1.3 8.2 1
DUF1330 Protein of unknown function (DUF1330) 2.9 8.2 1
BssS Biofilm regulator BssS 1.3 8.2 1
DUF1945 Domain of unknown function (DUF1945) 1.0 8.3 1
DUF2071 Uncharacterized conserved protein (CO 0.2 8.4 1
AAA ATPase family associated with various 0.2 8.5 1
D123 D123 -1.4 8.9 1
DUF2258 Uncharacterized protein conserved in 1.4 8.9 1
Ycf34 Hypothetical chloroplast protein Ycf3 1.7 9 1
CBM_11 Carbohydrate binding domain (family 1 -0.2 9.2 1
Nckap1 Membrane-associated apoptosis protein -2.7 9.3 1
CPSase_L_D3 Carbamoyl-phosphate synthetase large -0.9 9.4 1
GSPII_E_N GSPII_E N-terminal domain 1.5 9.6 1
Beta-lactamase Beta-lactamase 0.2 9.7 1
CT20 CT20 family 0.3 9.7 1
DUF2145 Uncharacterized protein conserved in -0.3 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RNA_polI_A34 1/1 103 129 .. 215 241 .] 2.0 3.3
Phage_TAC 1/1 120 128 .. 131 139 .] 2.9 1.8
TrwC 1/1 126 151 .. 407 437 .] 3.8 0.35
Nop 1/1 194 211 .. 136 153 .] 2.8 3.4
DUF1151 1/1 249 277 .. 102 130 .] 2.7 2.7
HS6ST 1/1 253 270 .. 320 337 .] -0.6 7.4
DUF752 1/1 255 284 .. 1 30 [. 1.9 4.5
BssS 1/1 306 330 .. 79 103 .. 1.3 8.2
CPSase_L_D3 1/1 313 320 .. 108 115 .. -0.9 9.4
CysG_dimeriser 1/2 319 340 .. 43 64 .] 1.4 14
CysG_dimeriser 2/2 354 375 .. 43 64 .] 1.2 16
NinB 1/1 367 383 .. 116 132 .] 1.6 5.6
Ribonuc_red_2_N 1/1 380 406 .. 50 84 .. 2.8 1.8
CNP1 1/1 382 391 .. 156 165 .] 1.4 6.3
Ten_N 1/1 619 634 .. 150 165 .. -1.4 2.1
SepQ 1/1 691 702 .. 294 305 .] -1.4 6.6
DUF2071 1/1 716 733 .. 149 169 .. 0.2 8.4
Beta-lactamase 1/1 727 762 .. 341 386 .] 0.2 9.7
Bac_DNA_binding 1/1 832 850 .. 1 26 [. 5.1 0.89
PPC 1/1 893 910 .. 1 18 [. 1.9 7.6
DUF2258 1/1 897 908 .. 69 80 .] 1.4 8.9
DUF48 1/1 906 919 .. 1 14 [. 0.3 7.6
AlaDh_PNT_N 1/1 954 971 .. 48 66 .. 0.9 4.9
DUF570 1/1 1017 1043 .. 1 31 [. 1.0 3.5
Bac_rhodopsin 1/1 1039 1054 .. 1 16 [. 0.2 7.8
Phage-MuB_C 1/1 1113 1142 .. 52 81 .] 6.8 0.41
Cm_res_leader 1/2 1199 1214 .. 1 17 [] 4.1 5.3
RHS_repeat 1/1 1216 1233 .. 1 18 [. 6.0 0.74
Herpes_BFRF1 1/1 1259 1289 .. 192 222 .] 1.3 4.1
Cm_res_leader 2/2 1368 1381 .. 1 17 [] 1.5 29
DUF1729 1/2 1372 1401 .. 28 57 .] 2.2 6.9
Tape_meas_lam_C 1/1 1397 1411 .. 64 78 .] 2.2 6.1
FixO 1/1 1419 1477 .. 157 227 .] 5.5 0.38
DUF1729 2/2 1437 1461 .. 30 54 .. 1.5 10
3HCDH_N 1/1 1467 1482 .. 171 188 .] 1.9 3.4
Herpes_UL49_1 1/1 1481 1494 .. 1 14 [. 2.8 2
DUF1434 1/1 1486 1495 .. 127 140 .] -0.1 5.9
DUF2145 1/1 1494 1503 .. 1 14 [. -0.3 9.9
Rsc14 1/1 1499 1512 .. 91 104 .] 1.4 4
DUF1814 1/1 1500 1572 .. 227 299 .] 2.9 1.2
Ribosomal_L28e 1/1 1519 1532 .. 121 134 .] 2.5 3.1
AAA 1/1 1581 1589 .. 208 216 .] 0.2 8.5
Sre 1/1 1601 1607 .. 378 384 .] 0.3 7.4
Neocarzinostat 1/1 1621 1630 .. 103 113 .] 1.2 5.7
DUF1778 1/1 1649 1659 .. 71 81 .] 2.2 8.1
Gly_reductase 1/1 1667 1683 .. 414 430 .] -1.1 7.7
Cpl-7 1/1 1673 1688 .. 26 42 .] 5.8 0.89
CT20 1/1 1698 1716 .. 1 22 [. 0.3 9.7
DUF1813 1/1 1723 1734 .. 69 80 .] 5.6 0.68
QueT 1/1 1783 1792 .. 1 10 [. 1.3 8.2
Asp_Glu_race 1/1 1802 1961 .. 87 254 .] 23.4 8.1e-06
DUF1929 1/1 1841 1852 .. 1 14 [. 1.0 5.2
DUF1121 1/1 1863 1874 .. 40 51 .. 1.3 6.5
GSPII_E_N 1/1 1960 1973 .. 1 14 [. 1.5 9.6
Phage_lambd_GpG 1/1 1977 2001 .. 127 151 .] 1.4 4.1
DapD_N 1/1 2016 2030 .. 44 58 .. 2.4 2.9
Glutaminase 1/1 2021 2037 .. 1 17 [. 1.7 2.1
TetR_C_3 1/1 2123 2143 .. 1 21 [. 2.2 5.6
CBM_11 1/1 2134 2150 .. 201 218 .] -0.2 9.2
TarH 1/1 2185 2206 .. 120 141 .] 2.7 3.8
NAD_binding_3 1/1 2218 2231 .. 1 14 [. 2.4 4.8
NAD_binding_4 1/1 2224 2248 .. 260 286 .] 2.9 0.3
AIRS 1/1 2284 2309 .. 1 26 [. 3.4 1.4
Peptidase_M30 1/1 2286 2309 .. 396 419 .] 3.7 0.67
G_glu_transpept 1/1 2305 2329 .. 529 555 .] 3.7 0.68
Ligase_CoA 1/1 2335 2354 .. 127 149 .] 1.9 6.7
Mycoplasma_MAA2 1/1 2395 2415 .. 54 73 .] 1.9 3.6
Pal1 1/1 2396 2406 .. 135 146 .] 1.6 5.1
TOBE 1/1 2398 2434 .. 1 45 [. 3.2 5.3
KR 1/1 2400 2421 .. 74 95 .. 3.5 1.2
DUF2236 1/1 2470 2494 .. 246 269 .] 1.0 6.3
PAP1 1/1 2612 2623 .. 407 418 .. -0.0 6.2
DUF485 1/1 2614 2622 .. 1 9 [. 2.9 5.3
DUF1895 1/1 2646 2656 .. 1 12 [. 1.8 4.2
DUF336 1/1 2695 2726 .. 77 112 .. 2.4 4.6
IMS-faced 1/1 2698 2712 .. 31 45 .] 3.4 5.7
DUF2493 1/1 2706 2716 .. 1 11 [. 4.6 1.6
Fibrillarin 1/1 2759 2770 .. 221 232 .] 4.3 0.63
Ycf34 1/1 2854 2862 .. 70 78 .] 1.7 9
VLPT 1/1 2870 2896 .. 1 29 [] 4.8 1.1
DUF2399 1/1 2878 2911 .. 1 41 [. 2.1 1.3
Xlink 1/1 2878 2889 .. 1 12 [. -0.2 3.3
COLFI 1/1 2882 2889 .. 1 9 [. -1.2 7.5
DUF1330 1/1 2965 2983 .. 1 19 [. 2.9 8.2
DUF936 1/1 3033 3045 .. 784 796 .] 3.5 0.27
DUF2126 1/1 3056 3109 .. 297 348 .. 0.3 4.3
TFIIA 1/1 3090 3121 .. 82 113 .. -0.5 1.9
IgaA 1/1 3123 3143 .. 555 575 .. 0.3 1.8
Nckap1 1/1 3190 3196 .. 1 7 [. -2.7 9.3
Methylase_S 1/1 3192 3204 .. 164 176 .] 2.9 2.9
PYNP_C 1/1 3208 3228 .. 54 75 .] 7.7 0.29
D123 1/1 3212 3224 .. 147 159 .. -1.4 8.9
RNA_capsid 1/1 3224 3237 .. 1 15 [. 2.3 0.8
Talin_middle 1/1 3225 3235 .. 1 13 [. 0.6 5.7
tRNA_Me_trans 1/1 3409 3416 .. 384 391 .] -0.4 6.3
OGFr_III 1/1 3476 3495 .. 1 20 [] 4.4 4.3
DUF1945 1/1 3489 3499 .. 41 51 .] 1.0 8.3
Allene_ox_cyc 1/1 3517 3538 .. 156 177 .] 0.2 5.8
Alignments of top-scoring domains:
RNA_polI_A34: domain 1 of 1, from 103 to 129: score 2.0, E = 3.3
*->sqkksepdaedkkpksskkkkkKKkKk<-*
s+k + da+ ++ ++ + ++++kKk
gi|1942919 103 SPKATQVDAPAPEKPKTDPAEEARKKK 129
Phage_TAC: domain 1 of 1, from 120 to 128: score 2.9, E = 1.8
*->ddaedArkk<-*
d+ae+Arkk
gi|1942919 120 DPAEEARKK 128
TrwC: domain 1 of 1, from 126 to 151: score 3.8, E = 0.35
CS -------.-HHHHHHHHHHHHHCT..T-.-H
*->RkaKdepidraeLraeWrerarelvgGfVDp<-*
Rk+K e d +L + W+++a+++++ +
gi|1942919 126 RKKK-ES-DARALTDGWQQQAQDAYD---KV 151
Nop: domain 1 of 1, from 194 to 211: score 2.8, E = 3.4
CS ...HHHHHHHHHHH----
*->GielreelekRlekleek<-*
G ++ +e+++e+++ +
gi|1942919 194 GADVKAAVEAKAEEIRKR 211
DUF1151: domain 1 of 1, from 249 to 277: score 2.7, E = 2.7
*->laqekdkekaeEeqevaPEflkVranLRr<-*
laqek+++ a ++ +lk+ + Rr
gi|1942919 249 LAQEKEQQAAARVDQEQAAYLKIPGGIRR 277
HS6ST: domain 1 of 1, from 253 to 270: score -0.6, E = 7.4
*->kehqeerrkrreerkylk<-*
ke q + r +e+ ylk
gi|1942919 253 KEQQAAARVDQEQAAYLK 270
DUF752: domain 1 of 1, from 255 to 284: score 1.9, E = 4.5
*->pelaelaeaLlkqwplplpgchriefaggr<-*
++a+ + + ++ +++++ g++r+e+++++
gi|1942919 255 QQAAARVDQEQAAYLKIPGGIRRFELEADD 284
BssS: domain 1 of 1, from 306 to 330: score 1.3, E = 8.2
*->rFLigKqrdIaeVvatAslddrska<-*
+FL++ q++I +V a++ d+++a
gi|1942919 306 TFLAALQKEIDTVAANGYKQDADQA 330
CPSase_L_D3: domain 1 of 1, from 313 to 320: score -0.9, E = 9.4
CS E--SBTTS
*->KqIDTcAA<-*
K IDT+AA
gi|1942919 313 KEIDTVAA 320
CysG_dimeriser: domain 1 of 2, from 319 to 340: score 1.4, E = 14
*->vlaGdeeeAealleqaLagaaa<-*
+++G ++A+++l+++ + +++
gi|1942919 319 AANGYKQDADQALKDLRNDPHD 340
CysG_dimeriser: domain 2 of 2, from 354 to 375: score 1.2, E = 16
*->vlaGdeeeAealleqaLagaaa<-*
+++G+ ++A+a+l+++ +g++
gi|1942919 354 LANGKVSDADAQLQALASGQGV 375
NinB: domain 1 of 1, from 367 to 383: score 1.6, E = 5.6
*->taFgiergVrwsDeare<-*
+a ++++gV+ D r+
gi|1942919 367 QALASGQGVKVPDSYRQ 383
Ribonuc_red_2_N: domain 1 of 1, from 380 to 406: score 2.8, E = 1.8
*->ewLwrSvpDtdaLesLpeeertGrEtSvKqvidRl<-*
++ ++ v D a r+G E ++ q+idR+
gi|1942919 380 SYRQQAVQDLKA--------RYGTEGGMGQLIDRV 406
CNP1: domain 1 of 1, from 382 to 391: score 1.4, E = 6.3
*->aaeaVrrLka<-*
+++aV++Lka
gi|1942919 382 RQQAVQDLKA 391
Ten_N: domain 1 of 1, from 619 to 634: score -1.4, E = 2.1
*->DSDNENKSDDDNGRPI<-*
D D NK DD GRPI
gi|1942919 619 DKDLKNKTHDDKGRPI 634
SepQ: domain 1 of 1, from 691 to 702: score -1.4, E = 6.6
*->EDFYstvslvCD<-*
+DFY +s v D
gi|1942919 691 DDFYHGLSAVVD 702
DUF2071: domain 1 of 1, from 716 to 733: score 0.2, E = 8.4
*->rpggepstaepGSLeeFLTER<-*
rpg +++++S +++LT+R
gi|1942919 716 RPGT---APAATSTASWLTDR 733
Beta-lactamase: domain 1 of 1, from 727 to 762: score 0.2, E = 9.7
CS EEEEEECCCEEEE.TTSSTEEEEEEESESSCHHHH HHHHHHHHHHH
*->tylwvdPerAVvWPPgraglgvavltNrdgpnpda.adarlialaaa
+ + d+++ ++++ +++N+ g +++ + + a+ aa
gi|1942919 727 ASWLTDRDN---------EVSMLMMMNQGG--SSRqGRIYGGAQDAA 762
CS
<-*
gi|1942919 - -
Bac_DNA_binding: domain 1 of 1, from 832 to 850: score 5.1, E = 0.89
CS -BHHHHHHHHHHHCTSS....T..HH
*->MtKsELieavAekaglsnknphLtKk<-*
M K EL ++ ++++gls K+
gi|1942919 832 MRKEELSAKASDDTGLS-------KA 850
PPC: domain 1 of 1, from 893 to 910: score 1.9, E = 7.6
CS -EEEEEEEESTTCEEEEE
*->dvdvysFtvpaggtlsis<-*
++ v+ F+ + g tl+++
gi|1942919 893 QTAVFEFEGKDGKTLWVD 910
DUF2258: domain 1 of 1, from 897 to 908: score 1.4, E = 8.9
*->vEfsIeDGkIvW<-*
+Ef+ +DGk +W
gi|1942919 897 FEFEGKDGKTLW 908
DUF48: domain 1 of 1, from 906 to 919: score 0.3, E = 7.6
*->tLYittqGtylrkd<-*
tL +++qG+ +k+
gi|1942919 906 TLWVDDQGAVYGKE 919
AlaDh_PNT_N: domain 1 of 1, from 954 to 971: score 0.9, E = 4.9
CS HHHHHT-EEESSH.HHHHT
*->aYeaAGAeIvdtawaevwa<-*
+Y+a A+Iv+t+ + vw+
gi|1942919 954 DYAAMDAHIVTTS-EKVWG 971
DUF570: domain 1 of 1, from 1017 to 1043: score 1.0, E = 3.5
*->tssaEalreavddrtnyGrsID.FAsiqkriq<-*
ts+a a d+ + Grs+ +FAs+ + q
gi|1942919 1017 TSWA-----ALDNISDHGRSVNpFASQEAMAQ 1043
Bac_rhodopsin: domain 1 of 1, from 1039 to 1054: score 0.2, E = 7.8
CS HHHHHHHHHHHHHHHH
*->lttwlwiGaagmllGt<-*
++ + w+++ag l+G+
gi|1942919 1039 EAMAQWLNVAGSLAGM 1054
Phage-MuB_C: domain 1 of 1, from 1113 to 1142: score 6.8, E = 0.41
CS HHHGGGT-TT -TTS--.SHHHHHHHHSSSS
*->qtLRlAaMtA.kGeGiarItedlIrqAfsel<-*
qtL +AaM+A++G + ++e+l + A +
gi|1942919 1113 QTLQQAAMFAeHGSEMS-VSEKLQNGAMLLM 1142
Cm_res_leader: domain 1 of 2, from 1199 to 1214: score 4.1, E = 5.3
*->msGvPGALAvvtRRtis<-*
GvP A tRR +s
gi|1942919 1199 -DGVPAATRPTTRRGMS 1214
RHS_repeat: domain 1 of 1, from 1216 to 1233: score 6.0, E = 0.74
*->YDanGrLtavtdpsgpvg<-*
Da+G+ +a td++g++g
gi|1942919 1216 RDAAGQPLARTDADGQSG 1233
Herpes_BFRF1: domain 1 of 1, from 1259 to 1289: score 1.3, E = 4.1
*->grlrpvegngervtgegeslesvaasvalgr<-*
+r+ +++g+ ++++ +++ ++++++s++lg
gi|1942919 1259 ARPTSDGGTSAPRDLRTPHRLTPWQSARLGT 1289
Cm_res_leader: domain 2 of 2, from 1368 to 1381: score 1.5, E = 29
*->msGvPGALAvvtRRtis<-*
Gv G A v RRt+s
gi|1942919 1368 --GVDGD-AGVQRRTVS 1381
DUF1729: domain 1 of 2, from 1372 to 1401: score 2.2, E = 6.9
*->dqDaqrVcILqGPvAarystkvdePvkeiL<-*
d +qr + +GP +++++ + P++ L
gi|1942919 1372 DAGVQRRTVSHGPAVVAHADGPEAPARMSL 1401
Tape_meas_lam_C: domain 1 of 1, from 1397 to 1411: score 2.2, E = 6.1
*->arIaarqAiagaiss<-*
ar+ +rq +++++
gi|1942919 1397 ARMSLRQNAISPLDN 1411
FixO: domain 1 of 1, from 1419 to 1477: score 5.5, E = 0.38
*->lrtvGVPYtdemienAkadleaqadpdaddadallerypkaqvrdfd
++ +GVPY +em ++A adl++ + + l + a+ ++
gi|1942919 1419 MENIGVPYGAEMAARALADLDSVMIVTG-----PLTAHGRAETNGPV 1460
gnpgrvtEmdALvAYLQvLGtlvd<-*
g+++ L AYL +LG++v
gi|1942919 1461 GAAS-------LGAYLASLGKDVV 1477
DUF1729: domain 2 of 2, from 1437 to 1461: score 1.5, E = 10
*->DaqrVcILqGPvAarystkvdePvk<-*
D ++V+I+ GP a + +++ Pv+
gi|1942919 1437 DLDSVMIVTGPLTAHGRAETNGPVG 1461
3HCDH_N: domain 1 of 1, from 1467 to 1482: score 1.9, E = 3.4
CS HHHHHT.T-EEEEE.ESS
*->elakkiLGKtPVvVrkDv<-*
++++++ GK +V V D+
gi|1942919 1467 AYLASL-GKDVVYV-TDR 1482
Herpes_UL49_1: domain 1 of 1, from 1481 to 1494: score 2.8, E = 2
*->lashdlaLlaALrk<-*
+++h+++L+++Lr+
gi|1942919 1481 DRAHARTLRKMLRQ 1494
DUF1434: domain 1 of 1, from 1486 to 1495: score -0.1, E = 5.9
*->RqLRqLLLysfeqq<-*
R LR++L+ q+
gi|1942919 1486 RTLRKMLR----QD 1495
DUF2145: domain 1 of 1, from 1494 to 1503: score -0.3, E = 9.9
*->qaLdaEfqlqGarV<-*
q+L++ ++arV
gi|1942919 1494 QDLNQ----PDARV 1503
Rsc14: domain 1 of 1, from 1499 to 1512: score 1.4, E = 4
*->PrsqLEsLSStdFA<-*
P + E+ S+ dFA
gi|1942919 1499 PDARVETFSARDFA 1512
DUF1814: domain 1 of 1, from 1500 to 1572: score 2.9, E = 1.2
*->d.i.rafnalleaikrtflerllalhkflfysrkdedfdgil.aeaa
d + ++f+a + a + + + lla hk+++ + ++++ ++++
gi|1942919 1500 DaRvETFSARDFASAGRQSRALLAMHKPQAVVAVEVAGRNTNnEYRL 1546
gllllapwleflkeilaltedyeeflesl<-*
+ ++++ +++l++ l d ++ ++++
gi|1942919 1547 QNGERVRGNAMLDQ---LLIDANDVADMV 1572
Ribosomal_L28e: domain 1 of 1, from 1519 to 1532: score 2.5, E = 3.1
*->SAilksqKVkktka<-*
+A+l + K+++++a
gi|1942919 1519 RALLAMHKPQAVVA 1532
AAA: domain 1 of 1, from 1581 to 1589: score 0.2, E = 8.5
CS HHHHHHHHH
*->reAalralr<-*
+eA++ra+r
gi|1942919 1581 NEAGMRAAR 1589
Sre: domain 1 of 1, from 1601 to 1607: score 0.3, E = 7.4
*->QLndSWi<-*
QL+dSW
gi|1942919 1601 QLADSWS 1607
Neocarzinostat: domain 1 of 1, from 1621 to 1630: score 1.2, E = 5.7
CS -EEE.EEE-B-
*->eggeGvAIsFg<-*
++++ +AI Fg
gi|1942919 1621 NLAA-QAIGFG 1630
DUF1778: domain 1 of 1, from 1649 to 1659: score 2.2, E = 8.1
*->rLkkAaaryka<-*
+L++++ar+ka
gi|1942919 1649 ALLDTMARHKA 1659
Gly_reductase: domain 1 of 1, from 1667 to 1683: score -1.1, E = 7.7
*->tGaTnelGfsklsakgy<-*
+GaT++ G+ k kg+
gi|1942919 1667 VGATSVRGYDKTVQKGV 1683
Cpl-7: domain 1 of 1, from 1673 to 1688: score 5.8, E = 0.89
*->qGYDvkAVQskVNeiLt<-*
+GYD k VQ+ V e+L
gi|1942919 1673 RGYD-KTVQKGVYELLQ 1688
CT20: domain 1 of 1, from 1698 to 1716: score 0.3, E = 9.7
*->eeElrLfkaicRgfKPvKLkGI<-*
++ ++Lf++i R+f P GI
gi|1942919 1698 LDMAQLFEGIQRRFLPE---GI 1716
DUF1813: domain 1 of 1, from 1723 to 1734: score 5.6, E = 0.68
*->itVmaGrLVIta<-*
i+V+++ +VIta
gi|1942919 1723 IRVQDDAIVITA 1734
QueT: domain 1 of 1, from 1783 to 1792: score 1.3, E = 8.2
*->dlaliAiiAA<-*
+l++++++AA
gi|1942919 1783 NLVHAGVVAA 1792
Asp_Glu_race: domain 1 of 1, from 1802 to 1961: score 23.4, E = 8.1e-06
CS ES-CHHHCCCHHH..HH....HHS.SS-EEECHHHHHHHHHHH.TTS
*->iACNTAsavaldeyklrLaaakalpdiPvigviepavkaAlkaetga
+ACNTA +++ ++ l + v+ i+ ++ +++ g+
gi|1942919 1802 FACNTACTAFPEA--LA----GTH-QAKVVNLIMQTAPRIVTE--GG 1839
CS SEEEEEE-HHHHHHTHHHHHHHCTT.TCEEEEE CCH.HHHCC
krvgvlATpgTiksgayrellkefgapgveVia........laclpelVp
r +v+ATpgT+k +ay e+++e +g + + + + ++ +a +l +
gi|1942919 1840 ARPVVVATPGTVKLHAYLEAVAEAS-GGSVTVKeigatewaDAV-NNLMH 1887
CS HHCCTCCCCTC.CCHHHHHHHHHCCCCCH TT-SCEEE-.SHHCCCHHGH
dilvEegklggveaaleellkellkplke.dgaDtiiLGaCThypllaip
l+++ k + l+ l+++++ + + + +a + CThyp l+
gi|1942919 1888 --LADGAK----LEQLKGLVAKYINAEQIpADATSLWFC-CTHYPALE-T 1929
CS HHHHHC.S -SSEE.E-HHHHHHHCCCCCHH
eiekalGd...lgvpveIDsgaataeravrlll<-*
+ ++ l ++ +v + ID+++ a+ v++l
gi|1942919 1930 LVRQQLDAigrSDVRL-IDPMQYQARKGVEMLV 1961
DUF1929: domain 1 of 1, from 1841 to 1852: score 1.0, E = 5.2
CS ---EEE.ES-SEEE
*->RPtItstvaPssik<-*
RP++++ P+++k
gi|1942919 1841 RPVVVA--TPGTVK 1852
DUF1121: domain 1 of 1, from 1863 to 1874: score 1.3, E = 6.5
*->gfGGSmTLfEtG<-*
+ GGS+T++E+G
gi|1942919 1863 ASGGSVTVKEIG 1874
GSPII_E_N: domain 1 of 1, from 1960 to 1973: score 1.5, E = 9.6
CS HHHTT-S-HHHHHH
*->LvelGliseeqlae<-*
Lv++Gli+ + l+e
gi|1942919 1960 LVDQGLIDRSALLE 1973
Phage_lambd_GpG: domain 1 of 1, from 1977 to 2001: score 1.4, E = 4.1
*->datseetesaeeaEdvTaeKsStvS<-*
d+ ++ +++++++ ++T + +S vS
gi|1942919 1977 DPSAVPDDKTLPTIVFTTGQPSRVS 2001
DapD_N: domain 1 of 1, from 2016 to 2030: score 2.4, E = 2.9
*->sGvLFGEwddiepfL<-*
+++ FGE++d++p+L
gi|1942919 2016 FKTAFGEAADVSPAL 2030
Glutaminase: domain 1 of 1, from 2021 to 2037: score 1.7, E = 2.1
CS SB---SSHHHHTS-TT-
*->GkvAdYIPaLAkvdpdl<-*
G+ Ad+ PaLA vd+ +
gi|1942919 2021 GEAADVSPALALVDGGR 2037
TetR_C_3: domain 1 of 1, from 2123 to 2143: score 2.2, E = 5.6
*->LesiLepWLaplrpFdvdddP<-*
Le iL +pl++++v+d P
gi|1942919 2123 LEGILREMGEPLDNIRVFDAP 2143
CBM_11: domain 1 of 1, from 2134 to 2150: score -0.2, E = 9.2
CS EEEEEEE-BXXX.XXXXX
*->IDNIrLtgqsevvkapqr<-*
+DNIr+ +++ + +a ++
gi|1942919 2134 LDNIRVFDAPIG-SAAEP 2150
TarH: domain 1 of 1, from 2185 to 2206: score 2.7, E = 3.8
CS HHHHHHHHHHHHHHHHHHHHTT
*->qdgfdpayrdwlqqavklkgea<-*
+d+f+pa++++ +a+++ g+
gi|1942919 2185 IDDFNPALDQIVLEANAIDGIE 2206
NAD_binding_3: domain 1 of 1, from 2218 to 2231: score 2.4, E = 4.8
CS --SHHHHHHHHHCH
*->GlGaiGsgllelLr<-*
G+G++G+ + ++L+
gi|1942919 2218 GMGGVGGLIPRALD 2231
NAD_binding_4: domain 1 of 1, from 2224 to 2248: score 2.9, E = 0.3
*->GvlpdilgdpdavrldlvPVDyVanai<-*
G++p+ l + d + +vPVD+V+ a
gi|1942919 2224 GLIPRALDGSDI--AAVVPVDHVVTAS 2248
AIRS: domain 1 of 1, from 2284 to 2309: score 3.4, E = 1.4
CS ---B--------EEEEEEEEEETTTS
*->GDDAAvirlpgpvlvvttDgvvtkvh<-*
DA+++++ +++ v+t+Dg+ t vh
gi|1942919 2284 AADAGAVDGVSRERVATVDGFSTEVH 2309
Peptidase_M30: domain 1 of 1, from 2286 to 2309: score 3.7, E = 0.67
*->DAGAVTSLSKPSVQTVGtlSVVVh<-*
DAGAV +S+ V TV S+ Vh
gi|1942919 2286 DAGAVDGVSRERVATVDGFSTEVH 2309
G_glu_transpept: domain 1 of 1, from 2305 to 2329: score 3.7, E = 0.68
*->ssgvgaiiavlkeggvlygasDpRrdG<-*
s++v++++++l g+ ++++pR++G
gi|1942919 2305 STEVHQAVITL--YGRAAAGGEPRGPG 2329
Ligase_CoA: domain 1 of 1, from 2335 to 2354: score 1.9, E = 6.7
CS SSEEE-SS......HHHHHHHHH
*->lnilsadaacKnaALrdAakkvV<-*
l++++a a + L+dAa++vV
gi|1942919 2335 LPGGPALA---RKPLADAAEAVV 2354
Mycoplasma_MAA2: domain 1 of 1, from 2395 to 2415: score 1.9, E = 3.6
*->KDGAvsK.AFEKtiDGFKAEA<-*
+DGA s+ A E t+DG A
gi|1942919 2395 RDGAPSRaAIEATVDGIHASG 2415
Pal1: domain 1 of 1, from 2396 to 2406: score 1.6, E = 5.1
*->DGAPASraAIra<-*
DGAP SraAI+a
gi|1942919 2396 DGAP-SRAAIEA 2406
TOBE: domain 1 of 1, from 2398 to 2434: score 3.2, E = 5.3
CS ESTSEEEEEEEEEEEE-SSEEEEEEEETTS.EEEEEEEHE-HHHH
*->ssarNqlpGtVtvveplGveteVrvdlgggqtltAritrldrsae<-
++ r+++++tV+++++ G +l+g + ++++ ++ s++
gi|1942919 2398 APSRAAIEATVDGIHASG------GRLAGVHYVVSHGDG--LSVP 2434
CS
*
gi|1942919 - -
KR: domain 1 of 1, from 2400 to 2421: score 3.5, E = 1.2
*->drdavrallaeiradgpPlrGV<-*
+r+a +a++++i+a+g++l+GV
gi|1942919 2400 SRAAIEATVDGIHASGGRLAGV 2421
DUF2236: domain 1 of 1, from 2470 to 2494: score 1.0, E = 6.3
*->aeRrfrrlarl.vrlvypllPwrlR<-*
++R+++r +++++r v ++P +lR
gi|1942919 2470 SQREAARHGAVdARSVIGTVPLSLR 2494
PAP1: domain 1 of 1, from 2612 to 2623: score -0.0, E = 6.2
CS HHHHTSSSX..X
*->DRItShPkfrNg<-*
DRI++hP++++g
gi|1942919 2612 DRIRAHPDYQEG 2623
DUF485: domain 1 of 1, from 2614 to 2622: score 2.9, E = 5.3
*->iqanPkFqe<-*
i+a+P++qe
gi|1942919 2614 IRAHPDYQE 2622
DUF1895: domain 1 of 1, from 2646 to 2656: score 1.8, E = 4.2
*->MTsLEarLsgvd<-*
T L arL+g+d
gi|1942919 2646 -TGLNARLYGAD 2656
DUF336: domain 1 of 1, from 2695 to 2726: score 2.4, E = 4.6
*->lqpHgpalfggivllpdprlvafGGGvPIvvdGagi<-*
+q+ g++++g++++l p ++ GGG P++ G ++
gi|1942919 2695 VQD-GGRFHGAMPAL--PVVAVTGGGKPVRQHG-AR 2726
IMS-faced: domain 1 of 1, from 2698 to 2712: score 3.4, E = 5.7
*->ggGlpGvsPalPlli<-*
gg G++PalP ++
gi|1942919 2698 GGRFHGAMPALPVVA 2712
DUF2493: domain 1 of 1, from 2706 to 2716: score 4.6, E = 1.6
*->PeGtrVafsGG<-*
P+ ++Va++GG
gi|1942919 2706 PALPVVAVTGG 2716
Fibrillarin: domain 1 of 1, from 2759 to 2770: score 4.3, E = 0.63
CS TTEEEEEEEE--
*->rDHavvVGiyrg<-*
rDH vvVG r+
gi|1942919 2759 RDHLVVVGAVRP 2770
Ycf34: domain 1 of 1, from 2854 to 2862: score 1.7, E = 9
*->pGrWsrlrP<-*
pGrW rl P
gi|1942919 2854 PGRWRRLSP 2862
VLPT: domain 1 of 1, from 2870 to 2896: score 4.8, E = 1.1
*->LqqssdsDlHesssvELpdpskEevqles<-*
s D H+ ++ pd +E v le
gi|1942919 2870 --HSFKIDHHGNVFLRRPDGTRERVRLEA 2896
DUF2399: domain 1 of 1, from 2878 to 2911: score 2.1, E = 1.3
*->grltGvvrLdnlse.eEreaLaaLLGRrlKHLlRagrsvrVd<-*
G+v L++++ ++Er +L+a+LG rl ++g++ +V+
gi|1942919 2878 ----GNVFLRRPDGtRERVRLEAYLGPRL----GSGGAKTVF 2911
Xlink: domain 1 of 1, from 2878 to 2889: score -0.2, E = 3.3
*->GeVFhyrapsgR<-*
G VF++r+ ++R
gi|1942919 2878 GNVFLRRPDGTR 2889
COLFI: domain 1 of 1, from 2882 to 2889: score -1.2, E = 7.5
*->lksPeGksr<-*
l++P+G +r
gi|1942919 2882 LRRPDG-TR 2889
DUF1330: domain 1 of 1, from 2965 to 2983: score 2.9, E = 8.2
*->peayaeYaalagpalakfG<-*
+ +y++Yaa +++++ + G
gi|1942919 2965 AIGYERYAASTKDLFDAAG 2983
DUF936: domain 1 of 1, from 3033 to 3045: score 3.5, E = 0.27
*->LtHVesaasales<-*
LtHVe+ a+a+ +
gi|1942919 3033 LTHVETGADASQG 3045
DUF2126: domain 1 of 1, from 3056 to 3109: score 0.3, E = 4.3
*->daaalrrqaegasearapaaaarakarkaapaqerpeqee..saegv
++aa +r+ g+++ + + a+ +++ + +pa ++p+++ ++ ++
gi|1942919 3056 QQAARARGSDGTQGRAGGEGAVVRATISHGPAGNAPPPGSngPRPWK 3102
VRTALcV<-*
VRTAL+V
gi|1942919 3103 VRTALAV 3109
TFIIA: domain 1 of 1, from 3090 to 3121: score -0.5, E = 1.9
CS XXXX.XXXXXXXXXXXXXXXXXXXXXXX..XX
*->eaPavanlPkptpaqnplakqlaaatanssev<-*
++P++ n P p ++ ++la+++a+++a+ s++
gi|1942919 3090 APPPGSNGPRPWKVRTALAVSAAGTFAAASGA 3121
IgaA: domain 1 of 1, from 3123 to 3143: score 0.3, E = 1.8
*->pVSAeaLenLVdTatSSFiyr<-*
++SA nLV T++ Fiyr
gi|1942919 3123 AISAQTGANLVLTSAGCFIYR 3143
Nckap1: domain 1 of 1, from 3190 to 3196: score -2.7, E = 9.3
*->asQqKlA<-*
a+QqK+A
gi|1942919 3190 ANQQKFA 3196
Methylase_S: domain 1 of 1, from 3192 to 3204: score 2.9, E = 2.9
CS HHHHHHHHHHHHH
*->QqkIasiLdqLDa<-*
Qqk a+ LdqLDa
gi|1942919 3192 QQKFARALDQLDA 3204
PYNP_C: domain 1 of 1, from 3208 to 3228: score 7.7, E = 0.29
CS EESSCHHHHHHHHHHHHHEEEE
*->YandeikleeaiaklkkaikIs<-*
+a++++ l+ea++k+++a ++
gi|1942919 3208 HADKKD-LPEAADKIREAQAVI 3228
D123: domain 1 of 1, from 3212 to 3224: score -1.4, E = 8.9
*->KnFpelhqkIkea<-*
K++pe+++kI+ea
gi|1942919 3212 KDLPEAADKIREA 3224
RNA_capsid: domain 1 of 1, from 3224 to 3237: score 2.3, E = 0.8
*->MAgAfigglAadalg<-*
A+A ig + a++l+
gi|1942919 3224 -AQAVIGTIGASMLT 3237
Talin_middle: domain 1 of 1, from 3225 to 3235: score 0.6, E = 5.7
*->pQrALlGtIsasq<-*
+A +GtI as+
gi|1942919 3225 --QAVIGTIGASM 3235
tRNA_Me_trans: domain 1 of 1, from 3409 to 3416: score -0.4, E = 6.3
*->rcLGGGiI<-*
++LGGG+I
gi|1942919 3409 VLLGGGVI 3416
OGFr_III: domain 1 of 1, from 3476 to 3495: score 4.4, E = 4.3
*->sPsEtPGPrPA.GParDEPAE<-*
PsEtP rPA+G r P
gi|1942919 3476 -PSETPRERPAsGSVRVQPYS 3495
DUF1945: domain 1 of 1, from 3489 to 3499: score 1.0, E = 8.3
*->vkvkPYktEvv<-*
v+v+PY+ + v
gi|1942919 3489 VRVQPYSPDHV 3499
Allene_ox_cyc: domain 1 of 1, from 3517 to 3538: score 0.2, E = 5.8
CS -SS----HHHHHT-GGGB-TT-
*->spsvepapeAkalephavvanf<-*
s+ ++ ++A+a+ p++ vanf
gi|1942919 3517 SEGQKAEAQAQAMTPDQQVANF 3538
//