hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 195972913.fa
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Query sequence: gi|195972913|ref|NP_001124443.1|
Accession: [none]
Description: nasal embryonic LHRH factor isoform d [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
UPF0547 Uncharacterised protein family UPF054 5.7 1.7 1
NUP Purine nucleoside permease (NUP) 1.5 2 1
Apo-CIII Apolipoprotein CIII (Apo-CIII) 3.2 2.1 1
Orthopox_B11R Orthopoxvirus B11R protein 3.4 2.9 1
AMP_N Aminopeptidase P, N-terminal domain 1.9 4.4 1
TIR TIR domain 0.9 5.4 1
IMPDH IMP dehydrogenase / GMP reductase dom 0.6 6 1
Orthopox_N1 Orthopoxvirus N1 protein 0.7 6.4 1
IFRD Interferon-related developmental regu -0.2 6.5 1
c-SKI_SMAD_bind c-SKI Smad4 binding domain 1.4 6.8 1
PSI Plexin repeat 1.7 7.6 1
IQ IQ calmodulin-binding motif 3.4 8.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Apo-CIII 1/1 98 120 .. 1 24 [. 3.2 2.1
PSI 1/1 155 168 .. 50 63 .] 1.7 7.6
UPF0547 1/1 165 175 .. 1 11 [. 5.7 1.7
IQ 1/1 227 241 .. 1 15 [. 3.4 8.4
AMP_N 1/1 249 260 .. 1 12 [. 1.9 4.4
NUP 1/1 319 327 .. 1 9 [. 1.5 2
Orthopox_B11R 1/1 353 368 .. 1 16 [. 3.4 2.9
c-SKI_SMAD_bind 1/1 355 371 .. 82 98 .] 1.4 6.8
IFRD 1/1 356 367 .. 354 365 .] -0.2 6.5
TIR 1/1 407 422 .. 131 150 .] 0.9 5.4
Orthopox_N1 1/1 476 489 .. 100 113 .] 0.7 6.4
IMPDH 1/1 497 505 .] 1 9 [. 0.6 6
Alignments of top-scoring domains:
Apo-CIII: domain 1 of 1, from 98 to 120: score 3.2, E = 2.1
*->MQPRvLLvvaLLaLLasArAeeae<-*
QPRv + + aLL s++Ae +e
gi|1959729 98 -QPRVYTISGEPALLPSPEAEAIE 120
PSI: domain 1 of 1, from 155 to 168: score 1.7, E = 7.6
CS ..B..TT-BCCCSS
*->dqwldwswsssqCp<-*
++w ++ + s+ Cp
gi|1959729 155 QSWAGSRQGSKECP 168
UPF0547: domain 1 of 1, from 165 to 175: score 5.7, E = 1.7
*->KtCPeCdaivp<-*
K+CP+C ++ p
gi|1959729 165 KECPGCAQLAP 175
IQ: domain 1 of 1, from 227 to 241: score 3.4, E = 8.4
CS HHHCHHHHHHHHHHH
*->rraaikIQaawRGyl<-*
+ a +++Qa +R +l
gi|1959729 227 QTATTTMQANFRKHL 241
AMP_N: domain 1 of 1, from 249 to 260: score 1.9, E = 4.4
*->ipadefaaRRkr<-*
++a+ fa+RR+r
gi|1959729 249 VKAQTFAERRER 260
NUP: domain 1 of 1, from 319 to 327: score 1.5, E = 2
*->iqpKVmvIt<-*
++pKVm+I+
gi|1959729 319 VPPKVMLIS 327
Orthopox_B11R: domain 1 of 1, from 353 to 368: score 3.4, E = 2.9
*->DtdvanvEDimnEiDR<-*
D + a EDi+ Ei+R
gi|1959729 353 DHEHATFEDILEEIER 368
c-SKI_SMAD_bind: domain 1 of 1, from 355 to 371: score 1.4, E = 6.8
CS CHHHHHHHHHHHHCC--
*->eeakLeqvLeevkekFd<-*
e+a+ e +Lee++ k +
gi|1959729 355 EHATFEDILEEIERKLN 371
IFRD: domain 1 of 1, from 356 to 367: score -0.2, E = 6.5
*->RstFRDVlrfvE<-*
++tF D+l+ +E
gi|1959729 356 HATFEDILEEIE 367
TIR: domain 1 of 1, from 407 to 422: score 0.9, E = 5.4
CS SG.....GGCCHHHHHHHHH
*->dktersqsdrikfWkkalya<-*
+k+e d+i+fWk++
gi|1959729 407 EKEE----DMIHFWKRLSRL 422
Orthopox_N1: domain 1 of 1, from 476 to 489: score 0.7, E = 6.4
*->rmiekyfddlmidl<-*
+mie+yfd + l
gi|1959729 476 QMIETYFDFRLYRL 489
IMPDH: domain 1 of 1, from 497 to 505: score 0.6, E = 6
CS EB-GGGGEE
RF xxxxxxxxx
*->egLTFDDVL<-*
+ L+FDDVL
gi|1959729 497 KLLDFDDVL 505
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