hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            195997969.fa
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Query sequence: gi|195997969|ref|XP_002108853.1|
Accession:      [none]
Description:    predicted protein [Trichoplax adhaerens]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
CRAM_rpt        Cysteine-rich, acidic integral membra     2.5          2   1
IlvN            Acetohydroxy acid isomeroreductase, c     4.0          2   1
DUF1757         Protein of unknown function (DUF1757)     1.2        4.5   1
DNA_mis_repair  DNA mismatch repair protein, C-termin     2.2        4.5   1
AAA             ATPase family associated with various     1.0        5.1   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
DUF1757           1/1      30    42 ..   167   179 .]     1.2      4.5
DNA_mis_repair    1/1      43    64 ..   128   149 .]     2.2      4.5
IlvN              1/1      62    72 ..     1    11 [.     4.0        2
AAA               1/1      72    80 ..     1     9 [.     1.0      5.1
CRAM_rpt          1/1      78    93 ..     1    16 [.     2.5        2

Alignments of top-scoring domains:
DUF1757: domain 1 of 1, from 30 to 42: score 1.2, E = 4.5
                   *->sllyaqVksgciw<-*
                      + l+a Vks+ i+
  gi|1959979    30    AVLIAAVKSQVIV    42

DNA_mis_repair: domain 1 of 1, from 43 to 64: score 2.2, E = 4.5
                CS    EEETTCHHHHHHHHHHHHHHHH
                   *->VrllkeeeilelikealkslLa<-*
                      V+ + ee+ l +++++++ +L+
  gi|1959979    43    VQYQYEESTLQMLRDKIHRSLQ    64

IlvN: domain 1 of 1, from 62 to 72: score 4.0, E = 2
                CS    HHHTS-EEEES
                   *->lLkgKkvAvIG<-*
                       L+gKk+A IG
  gi|1959979    62    SLQGKKIALIG    72

AAA: domain 1 of 1, from 72 to 80: score 1.0, E = 5.1
                CS    EEEEESSTT
                   *->gvLLyGPPG<-*
                      gvLL+G PG
  gi|1959979    72    GVLLHGQPG    80

CRAM_rpt: domain 1 of 1, from 78 to 93: score 2.5, E = 2
                   *->eaDDCnitGDCnEtDD<-*
                      +   CnitG  n t D
  gi|1959979    78    QPGKCNITGKDNKTYD    93

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