hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 195999102.fa
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Query sequence: gi|195999102|ref|XP_002109419.1|
Accession: [none]
Description: hypothetical protein TRIADDRAFT_53430 [Trichoplax adhaerens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CBF_beta Core binding factor beta subunit 6.8 0.12 1
MutS_III MutS domain III 7.2 0.14 1
SRP40_C SRP40, C-terminal domain 3.6 0.87 1
Suc_Fer-like Sucrase/ferredoxin-like 3.3 1.1 1
DUF1424 Putative rep protein (DUF1424) 1.8 1.3 1
DUF1636 Protein of unknown function (DUF1636) 2.3 1.7 1
dNK Deoxynucleoside kinase 3.3 1.8 1
Pox_F11 Poxvirus F11 protein 1.5 1.9 1
DeoR Bacterial regulatory proteins, deoR f 2.9 3 1
DUF1199 Protein of unknown function (DUF1199) 3.3 3.2 1
Myelin_MBP Myelin basic protein 1.9 3.8 1
CDC48_2 Cell division protein 48 (CDC48), dom 2.7 4.2 1
Insulin Insulin/IGF/Relaxin family 2.6 5 1
SBP56 56kDa selenium binding protein (SBP56 -0.6 5.9 1
DUF936 Plant protein of unknown function (DU -1.2 6.4 1
GalP_UDP_tr_C Galactose-1-phosphate uridyl transfer 1.4 6.6 1
Herpes_UL31 Herpesvirus UL31-like protein 0.2 7.2 1
Hepatitis_core Hepatitis core antigen -0.1 8.4 1
Pombe_5TM Pombe specific 5TM protein -0.8 9.2 1
DUF1864 Domain of unknown function (DUF1864) -0.6 9.3 1
DUF760 Protein of unknown function (DUF760) -0.7 9.4 1
DUF1390 Protein of unknown function (DUF1390) -1.0 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DeoR 1/1 18 46 .. 94 122 .. 2.9 3
DUF1636 1/1 56 64 .. 111 119 .] 2.3 1.7
DUF1390 1/1 201 217 .. 145 161 .. -1.0 9.7
MutS_III 1/1 206 496 .. 180 207 .. 7.2 0.14
DUF936 1/1 268 275 .. 1 8 [. -1.2 6.4
Hepatitis_core 1/1 337 365 .. 236 265 .] -0.1 8.4
DUF760 1/1 358 387 .. 1 30 [. -0.7 9.4
SRP40_C 1/1 358 389 .. 1 33 [. 3.6 0.87
DUF1199 1/1 365 386 .. 21 42 .. 3.3 3.2
Myelin_MBP 1/1 372 384 .. 164 176 .] 1.9 3.8
DUF1424 1/1 379 392 .. 316 329 .] 1.8 1.3
CDC48_2 1/1 384 413 .. 54 88 .] 2.7 4.2
DUF1864 1/1 430 454 .. 1 25 [. -0.6 9.3
Herpes_UL31 1/1 437 454 .. 267 284 .] 0.2 7.2
Pox_F11 1/1 441 474 .. 418 451 .] 1.5 1.9
GalP_UDP_tr_C 1/1 448 466 .. 188 221 .] 1.4 6.6
dNK 1/1 452 498 .. 123 170 .] 3.3 1.8
CBF_beta 1/1 473 485 .. 1 14 [. 6.8 0.12
Suc_Fer-like 1/1 482 505 .. 251 278 .] 3.3 1.1
Pombe_5TM 1/1 485 495 .. 1 11 [. -0.8 9.2
Insulin 1/1 500 510 .. 113 123 .] 2.6 5
SBP56 1/1 510 516 .. 1 7 [. -0.6 5.9
Alignments of top-scoring domains:
DeoR: domain 1 of 1, from 18 to 46: score 2.9, E = 3
*->dklFlSadGidldgglttsnllEasvkra<-*
++ FlS ++id + +t+++++ +++k+a
gi|1959991 18 HRTFLSSNAIDFQKEITKTSFPHYQYKTA 46
DUF1636: domain 1 of 1, from 56 to 64: score 2.3, E = 1.7
*->kgilARIPP<-*
k ++AR+PP
gi|1959991 56 KSFVARLPP 64
DUF1390: domain 1 of 1, from 201 to 217: score -1.0, E = 9.7
*->EkDmgGnltKTpLNKYa<-*
E+ ++Gn+ K +N Ya
gi|1959991 201 ERYPKGNIIKSRINEYA 217
MutS_III: domain 1 of 1, from 206 to 496: score 7.2, E = 0.14
CS SS-B-T
RF xxxxxx
*->GglIks.........................................
G++Iks+ ++ + ++ ++++ ++++++ ++++++++++++ +++
gi|1959991 206 GNIIKSrineyanavknfnssklkshqnningqdsdesprdgiktkl 252
CS
RF
..................................................
+ ++ ++ +++ +++ +++++++++++++++++++++ +++++++
gi|1959991 253 ltlddlepaytrdiiltprvlqngsnrsgsrsknrqsnsqgsasrrssgr 302
CS
RF
..................................................
+ ++++++ ++ +++++ ++ ++++ ++++++++++++ +++++ +++
gi|1959991 303 matagegrknirgystrdsasrlgkndykqsspktgrrsragspskvngg 352
CS
RF
..................................................
++++ ++++ +++++++ ++++++++++ ++ +++++ ++++ ++++++
gi|1959991 353 sqkelsqspasrqnndsaashessresspyrrirstspvgksnidhttsn 402
CS
RF
..................................................
+++ ++++ +++++ ++ ++++ + +++ +++ +++ + +++ +
gi|1959991 403 nksllprskftesnearklrhetlkmladdsialgdnlrsdfvqyqneie 452
CS HHHHHHHHHHHHHHHHHTTHHH
RF xxxxxxxxxxxxxxxxxxxxxx
......................alalEkelfeelrervvehaep<-*
+ + + + + + + +++ +++++++++k++f+ l e++ + +
gi|1959991 453 rlryhaevhyelslgenfnpprVVDFQKATFDSLIEEINKRVNQ 496
DUF936: domain 1 of 1, from 268 to 275: score -1.2, E = 6.4
*->LtPGVLlK<-*
LtP+VL++
gi|1959991 268 LTPRVLQN 275
Hepatitis_core: domain 1 of 1, from 337 to 365: score -0.1, E = 8.4
*->prRRaptpqraGsPlPrs...ssdrsqSpssqc<-*
+ RR raGsP +++++++ sqSp+s++
gi|1959991 337 TGRR----SRAGSPSKVNggsQKELSQSPASRQ 365
DUF760: domain 1 of 1, from 358 to 387: score -0.7, E = 9.4
*->lpalpSrtsrrlaasiflssSspgflrpgs<-*
++++ Sr++ +aas+ +s s+ + r++s
gi|1959991 358 SQSPASRQNNDSAASHESSRESSPYRRIRS 387
SRP40_C: domain 1 of 1, from 358 to 389: score 3.6, E = 0.87
*->kkskskstntepakvdknskrkkkPFrRVdeek<-*
+ s + n+ +a++ ++s++ +P rR + ++
gi|1959991 358 SQSPASRQNNDSAASHESSRES-SPYRRIRSTS 389
DUF1199: domain 1 of 1, from 365 to 386: score 3.3, E = 3.2
*->tnnqgsgsmEtstissPsrRiR<-*
+nn ++ s E s ssP rRiR
gi|1959991 365 QNNDSAASHESSRESSPYRRIR 386
Myelin_MBP: domain 1 of 1, from 372 to 384: score 1.9, E = 3.8
*->srpgSRsgSPmaR<-*
s+ SR++SP +R
gi|1959991 372 SHESSRESSPYRR 384
DUF1424: domain 1 of 1, from 379 to 392: score 1.8, E = 1.3
*->dDPYRRLRtPPPGG<-*
+ PYRR+R P G
gi|1959991 379 SSPYRRIRSTSPVG 392
CDC48_2: domain 1 of 1, from 384 to 413: score 2.7, E = 4.2
CS EEEEEEEEETTSS-SS.--B-STT--EE--TT-EE
*->vVvstePsglsiggpVvvtedTeieigILekpvee<-*
+++st+P+g ++++T+ ++L+++
gi|1959991 384 RIRSTSPVG-----KSNIDHTTSNNKSLLPRSKFT 413
DUF1864: domain 1 of 1, from 430 to 454: score -0.6, E = 9.3
*->ttnaeafddWirarfvelNseLeaL<-*
++ a+ d +r++fv+ +e e+L
gi|1959991 430 ADDSIALGDNLRSDFVQYQNEIERL 454
Herpes_UL31: domain 1 of 1, from 437 to 454: score 0.2, E = 7.2
*->tDElkdeiikgkelisel<-*
+D l+ +++ +++ i +l
gi|1959991 437 GDNLRSDFVQYQNEIERL 454
Pox_F11: domain 1 of 1, from 441 to 474: score 1.5, E = 1.9
*->rceavkkRdkLvdilkyiidveNlLal.ssigvpv<-*
r++ v + +++ ++l+y ++v + L+l+++ + p+
gi|1959991 441 RSDFVQYQNEI-ERLRYHAEVHYELSLgENFNPPR 474
GalP_UDP_tr_C: domain 1 of 1, from 448 to 466: score 1.4, E = 6.6
CS HHHHHHHH.CS-..............SS-TTCCT
*->eqaaerlrkaLsgaDPktaLedNkmaevHyewal<-*
+ + erlr + evHye +l
gi|1959991 448 QNEIERLR-YHA--------------EVHYELSL 466
dNK: domain 1 of 1, from 452 to 498: score 3.3, E = 1.8
CS HHHHHHHHHHHTS--S--S-CCGGGS-EEEEE-SS-CCC.HHHHHHH
*->elLhkkHEekYekwlekynaspvlvidgdklDfvedeediknkinei
e+L+ +H e + + + n++p+ v+d k +f++ +e+i +++n+
gi|1959991 452 ERLR-YHAEVHYELSLGENFNPPRVVDFQKATFDSLIEEINKRVNQY 497
CS H
l<-*
+
gi|1959991 498 K 498
CBF_beta: domain 1 of 1, from 473 to 485: score 6.8, E = 0.12
*->MPRVVPDQrSkFeS<-*
PRVV Q+++F+S
gi|1959991 473 -PRVVDFQKATFDS 485
Suc_Fer-like: domain 1 of 1, from 482 to 505: score 3.3, E = 1.1
*->hvpaivdeLIVChigdgkilkelyRGwg<-*
+++++++e ++++++++k ++R +
gi|1959991 482 TFDSLIEE----INKRVNQYKDGCRIKS 505
Pombe_5TM: domain 1 of 1, from 485 to 495: score -0.8, E = 9.2
*->allkkiNsQvN<-*
+l+++iN vN
gi|1959991 485 SLIEEINKRVN 495
Insulin: domain 1 of 1, from 500 to 510: score 2.6, E = 5
CS TECHHHHGGGB
*->pCsldqLesYC<-*
+C +++L+ YC
gi|1959991 500 GCRIKSLALYC 510
SBP56: domain 1 of 1, from 510 to 516: score -0.6, E = 5.9
*->cksGPGY<-*
ck+GPGY
gi|1959991 510 CKGGPGY 516
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