hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 196005661.fa
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Query sequence: gi|196005661|ref|XP_002112697.1|
Accession: [none]
Description: hypothetical protein TRIADDRAFT_56986 [Trichoplax adhaerens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RhoGEF RhoGEF domain 37.9 7.4e-11 3
F-box F-box domain 33.5 1.4e-08 1
PH PH domain 16.4 0.0005 1
Gly_reductase Glycine/sarcosine/betaine reductase c 2.4 0.58 1
SufE Fe-S metabolism associated domain 5.4 0.78 1
DUF693 Protein of unknown function (DUF693) 2.1 1.4 1
Spore_YpjB Sporulation protein YpjB (SpoYpjB) 2.8 2.4 1
DUF1705 Domain of unknown function (DUF1705) 2.7 3.3 1
DUF496 Protein of unknown function (DUF496) 2.2 3.3 1
PP_kinase Polyphosphate kinase 0.2 3.8 1
DUF688 Protein of unknown function (DUF688) -0.3 3.9 1
Exotox-A_bind Exotoxin A binding -0.6 4.1 1
PhageMin_Tail Phage-related minor tail protein 2.2 4.2 1
TrbC_Ftype Type-F conjugative transfer system pi 2.7 4.2 1
PBC PBC domain 0.3 5 1
Peptidase_A21 Peptidase family A21 -1.8 6.6 1
ODV-E18 Occlusion-derived virus envelope prot 1.5 6.6 1
MethyTransf_Reg Predicted methyltransferase regulator 0.6 7 1
Leu_leader Leucine operon leader peptide 3.4 7 1
HTH_psq helix-turn-helix, Psq domain 2.7 8.1 1
OspE Borrelia outer surface protein E 0.6 9.5 1
GP46 Phage protein GP46 0.5 9.6 1
Fe_bilin_red Ferredoxin-dependent bilin reductase -0.2 9.7 1
tRNA_lig_trans Fungal tRNA ligase adenylyltransferas -0.9 9.8 1
EzrA Septation ring formation regulator, E -0.7 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PBC 1/1 52 57 .. 204 209 .] 0.3 5
F-box 1/1 85 132 .. 1 46 [] 33.5 1.4e-08
SufE 1/1 173 188 .. 1 16 [. 5.4 0.78
tRNA_lig_trans 1/1 173 181 .. 312 320 .. -0.9 9.8
Spore_YpjB 1/1 186 197 .. 223 234 .] 2.8 2.4
HTH_psq 1/1 277 292 .. 31 48 .] 2.7 8.1
Leu_leader 1/1 283 310 .. 1 28 [] 3.4 7
TrbC_Ftype 1/1 342 354 .. 1 13 [. 2.7 4.2
Gly_reductase 1/1 457 487 .. 1 31 [. 2.4 0.58
DUF1705 1/1 508 520 .. 145 157 .] 2.7 3.3
PhageMin_Tail 1/1 519 545 .. 199 227 .] 2.2 4.2
GP46 1/1 564 574 .. 1 11 [. 0.5 9.6
PP_kinase 1/1 577 594 .. 719 736 .] 0.2 3.8
DUF688 1/1 633 664 .. 507 541 .] -0.3 3.9
MethyTransf_Reg 1/1 652 658 .. 157 163 .] 0.6 7
RhoGEF 1/3 656 685 .. 1 30 [. 19.2 2.4e-05
EzrA 1/1 659 677 .. 524 542 .. -0.7 9.9
ODV-E18 1/1 675 686 .. 64 75 .. 1.5 6.6
RhoGEF 2/3 689 760 .. 57 143 .. 18.5 3.8e-05
OspE 1/1 713 721 .. 1 9 [. 0.6 9.5
Fe_bilin_red 1/1 764 795 .. 176 205 .. -0.2 9.7
RhoGEF 3/3 777 802 .. 180 207 .] 0.1 11
DUF496 1/1 793 820 .. 1 28 [. 2.2 3.3
Peptidase_A21 1/1 803 818 .. 674 689 .] -1.8 6.6
Exotox-A_bind 1/1 812 833 .. 253 274 .] -0.6 4.1
DUF693 1/1 835 852 .. 301 318 .] 2.1 1.4
PH 1/1 855 937 .. 23 92 .] 16.4 0.0005
Alignments of top-scoring domains:
PBC: domain 1 of 1, from 52 to 57: score 0.3, E = 5
*->rsRFLD<-*
r+RFLD
gi|1960056 52 RKRFLD 57
F-box: domain 1 of 1, from 85 to 132: score 33.5, E = 1.4e-08
CS -HHHHS-HHHHHHHHTTS-HHHHHHHTTT-HHHHHHHCT- HHH HH
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
+ +LP l l I+s+Ldp++l+r+++VS++w+ l+ + +w +k+
gi|1960056 85 DFTNHLPRFLSLYIFSFLDPRSLCRAAMVSWNWKFLAEQDaIWMpKC 131
CS H
l<-*
gi|1960056 132 V 132
SufE: domain 1 of 1, from 173 to 188: score 5.4, E = 0.78
CS HHHHHHH-SSHHHHHH
*->lvelFaevtnwedkYr<-*
+ ++F evt +++kYr
gi|1960056 173 MYRQFNEVTLGDHKYR 188
tRNA_lig_trans: domain 1 of 1, from 173 to 181: score -0.9, E = 9.8
*->mYRQWREVT<-*
mYRQ+ EVT
gi|1960056 173 MYRQFNEVT 181
Spore_YpjB: domain 1 of 1, from 186 to 197: score 2.8, E = 2.4
*->KYKGEKeKrKsr<-*
KY+GEK r+s+
gi|1960056 186 KYRGEKQGRRSK 197
HTH_psq: domain 1 of 1, from 277 to 292: score 2.7, E = 8.1
*->PrSTLwlrrlrggyslkr<-*
PrSTL+ ++ + s+k+
gi|1960056 277 PRSTLS-SHIVR-ESSKN 292
Leu_leader: domain 1 of 1, from 283 to 310: score 3.4, E = 7
*->MlHivrflg.lLLLNAsllRGrlVgGiqh<-*
+Hivr +++LLLN + ++ + +h
gi|1960056 283 -SHIVRESSkNLLLNTDYRGDFRIKSKRH 310
TrbC_Ftype: domain 1 of 1, from 342 to 354: score 2.7, E = 4.2
*->liFVSfSMPeesL<-*
+iF+S+ +P++ L
gi|1960056 342 VIFISSRIPAAEL 354
Gly_reductase: domain 1 of 1, from 457 to 487: score 2.4, E = 0.58
*->MkLelGnifIkDvkFGektkvedgvLtvnkd<-*
M L+l+ I ++F+ ++v + + vn d
gi|1960056 457 MELILQLGIITGMQFSAPSCVAESFIDVNSD 487
DUF1705: domain 1 of 1, from 508 to 520: score 2.7, E = 3.3
*->asikYlksqllsn<-*
a+++Y+++q++++
gi|1960056 508 ATWSYVSQQVKEA 520
PhageMin_Tail: domain 1 of 1, from 519 to 545: score 2.2, E = 4.2
*->dileelqkklkgltkddaqkaaalktlFG<-*
++ e++qk+l+ d+q+ +++++l G
gi|1960056 519 EASESVQKHLSLYI--DQQRKDVISKLTG 545
GP46: domain 1 of 1, from 564 to 574: score 0.5, E = 9.6
*->dsLtrAViISL<-*
+ L r++iISL
gi|1960056 564 GNLIRDAIISL 574
PP_kinase: domain 1 of 1, from 577 to 594: score 0.2, E = 3.8
CS -SS----HHHHHHHHHHH
*->agneqkvdsQaileeylk<-*
a+n++kvd+ a++ +yl
gi|1960056 577 AENQDKVDTAAYIADYLQ 594
DUF688: domain 1 of 1, from 633 to 664: score -0.3, E = 3.9
*->tehssrqeIlpEspSleiemvgkkpaaiselklvE<-*
t+h+ +qe+ E ++ + + + + el++ E
gi|1960056 633 TDHDDKQEKIEE---EDKKSEERRTLIVHELFSTE 664
MethyTransf_Reg: domain 1 of 1, from 652 to 658: score 0.6, E = 7
*->RrsLlcr<-*
Rr+L+++
gi|1960056 652 RRTLIVH 658
RhoGEF: domain 1 of 3, from 656 to 685: score 19.2, E = 2.4e-05
*->vlkElleTEkkYvrdLeildnvymkpLrea<-*
++ El+ TE +Y r+Lei++ + pLr+a
gi|1960056 656 IVHELFSTELNYMRTLEIIETAFVNPLRAA 685
EzrA: domain 1 of 1, from 659 to 677: score -0.7, E = 9.9
*->rlFendydYkeALeiiatA<-*
+lF ++ +Y ++Leii+tA
gi|1960056 659 ELFSTELNYMRTLEIIETA 677
ODV-E18: domain 1 of 1, from 675 to 686: score 1.5, E = 6.6
*->ragftNPLNaTM<-*
+++f+NPL+a M
gi|1960056 675 ETAFVNPLRAAM 686
RhoGEF: domain 2 of 3, from 689 to 760: score 18.5, E = 3.8e-05
*->hreFLkssLearisssnfedlDekkiepsaqrlGdlFlelkaeflqv
++ +L L++r++s+ s+q++Gd+F ++ l+
gi|1960056 689 NKGLLE-DLTPRVRSW-----------TSEQVIGDIFRKF-TVKLKT 722
YgeYcsnkpyAqelleklrqaasnpqFaefldeveassnt<-*
Y+ Y++n+ + ++ek + ++ p F++fl++ e + +t
gi|1960056 723 YTNYINNYTVTLSTIEK--CQEQFPGFRVFLKRTERKTQT 760
OspE: domain 1 of 1, from 713 to 721: score 0.6, E = 9.5
*->FseFtVkIK<-*
F +FtVk K
gi|1960056 713 FRKFTVKLK 721
Fe_bilin_red: domain 1 of 1, from 764 to 795: score -0.2, E = 9.7
CS HHHHHHHHHHHT---- -HH.HHHHHHHHHH
*->dYLqlylqlveqAepv..sdaeriaeilegQk<-*
+Y +l+ l++qA p+++ +e + +i+++Q+
gi|1960056 764 SYVKLLTALANQAPPNhpDHKELPLQIKQLQH 795
RhoGEF: domain 3 of 3, from 777 to 802: score 0.1, E = 11
*->pegedssesedLkkaldalqdlaksiNe<-*
p+ ++++++L + +++lq +++ i+e
gi|1960056 777 PP--NHPDHKELPLQIKQLQHVLSFIAE 802
DUF496: domain 1 of 1, from 793 to 820: score 2.2, E = 3.3
*->fqnvlelvrkaRrknklkReiednekKi<-*
+q+vl ++ +aR + R + + +k+i
gi|1960056 793 LQHVLSFIAEARARAERDRKMIALQKRI 820
Peptidase_A21: domain 1 of 1, from 803 to 818: score -1.8, E = 6.6
*->vRgrARgArrraarin<-*
+R rA ++r+ +a++
gi|1960056 803 ARARAERDRKMIALQK 818
Exotox-A_bind: domain 1 of 1, from 812 to 833: score -0.6, E = 4.1
CS ....----B---S---EEEE--
*->KvitvKqdldiKPtvveqRlHF<-*
K+i + ++ Pt +e HF
gi|1960056 812 KMIALQKRIENCPTLIEGNRHF 833
DUF693: domain 1 of 1, from 835 to 852: score 2.1, E = 1.4
*->tgECsLiLkLkddserky<-*
t EC+ +LkL++ e+
gi|1960056 835 TEECVTNLKLYSPIEDLG 852
PH: domain 1 of 1, from 855 to 937: score 16.4, E = 0.0005
CS EETTEEEEEESTT SSEEEEEEGGCEEEEEECST T
*->LfddvLlyykdkk............skpkgsipLsgiqvtkvedn.k
Lf+d L+ k++ + + ++++k s+ L ++v++v d++
gi|1960056 855 LFNDALVVTHRKSryfpfiraveqtDKFFVSVALIRLTVDDVADTkY 901
CS STTEEEEEE TSEEEEEECSSHHHHHHHHHHHHHHHH
rknvFeirt.dretlllqaeseeerkeWikaiqsair<-*
knvF+++t+ r +++ qa+s+e + +Wi+ ++++i
gi|1960056 902 AKNVFKMSTpKR-EWICQASSPEAKWRWISILEKSID 937
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