hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 196163037.fa
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Query sequence: gi|196163037|ref|ZP_03123568.1|
Accession: [none]
Description: toxin B [Clostridium difficile QCD-23m63]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CW_binding_1 Putative cell wall binding repeat 172.9 7.5e-54 16
Gly_transf_sug Glycosyltransferase sugar-binding reg 33.4 1.9e-09 1
Ham1p_like Ham1 family 9.1 0.026 1
Nrf1_DNA-bind NLS-binding and DNA-binding and dimer 4.7 0.3 1
Enterotoxin_a Heat-labile enterotoxin alpha chain 4.8 0.36 1
RRN3 RNA polymerase I specific transcripti 3.7 0.4 1
Sec66 Preprotein translocase subunit Sec66 4.0 0.59 1
DUF807 Coxiella burnetii protein of unknown 4.2 0.64 1
Pox_G5 Poxvirus G5 protein 0.9 0.74 1
UPF0254 Uncharacterised protein family (UPF02 4.1 0.79 1
DUF1779 Protein of unknown function (DUF1779) 1.3 0.91 1
Mo25 Mo25-like 2.7 0.95 1
Slx4 Slx4 endonuclease 1.7 0.96 1
DUF2415 Uncharacterised protein domain (DUF24 6.0 1.1 1
DUF1874 Domain of unknown function (DUF1874) 4.7 1.1 1
DUF533 Protein of unknown function (DUF533) 3.5 1.2 1
Citrus_P18 Citrus tristeza virus P18 protein 2.9 1.2 1
ComK ComK protein 3.3 1.3 1
DUF1157 Protein of unknown function (DUF1157) 2.1 1.6 1
MBD Methyl-CpG binding domain 3.8 1.7 1
ERF ERF superfamily 2.9 1.9 1
UbiD 3-octaprenyl-4-hydroxybenzoate carbox 1.4 1.9 1
Surp Surp module 4.6 2.3 1
Peptidase_M9 Collagenase 1.3 2.4 1
Ribophorin_II Ribophorin II (RPN2) -0.1 2.4 1
Clp_N Clp amino terminal domain 4.2 2.4 1
B5 tRNA synthetase B5 domain 3.2 2.5 1
DUF1803 Domain of unknown function (DUF1803) 3.0 2.6 1
DUF2466 Protein of unknown function (DUF2466) 2.7 2.7 1
Thr_dehydrat_C C-terminal regulatory domain of Threo 3.0 2.8 2
Oscp1 Organic solute transport protein 1 2.5 2.9 1
SelB-wing_2 Elongation factor SelB, winged helix 4.3 3.7 1
LRR_1 Leucine Rich Repeat 4.2 3.8 2
DUF1764 Eukaryotic protein of unknown functio -0.7 4.1 1
DUF1992 Domain of unknown function (DUF1992) 3.5 4.2 1
DUF972 Protein of unknown function (DUF972) 2.0 4.5 1
Ins_allergen_rp Insect allergen related repeat 3.2 4.7 1
XFP D-xylulose 5-phosphate/D-fructose 6-p 1.1 5.3 1
Prenylcys_lyase Prenylcysteine lyase -0.4 5.5 1
DUF595 Protein of unknown function, DUF595 2.2 5.5 1
Mur_ligase Mur ligase family, catalytic domain 2.1 5.5 1
14-3-3 14-3-3 protein 0.2 5.7 1
RNA_pol DNA-dependent RNA polymerase 0.7 5.7 1
Cohesin Cohesin domain 1.8 5.8 1
DUF2124 Uncharacterized protein conserved in 1.4 5.8 1
DUF267 Caenorhabditis protein of unknown fun 0.4 5.9 1
MutS_IV MutS family domain IV 2.5 5.9 1
Nup88 Nuclear pore component -0.9 5.9 1
DUF2555 Protein of unknown function (DUF2555) 2.2 6.1 1
Patched Patched family -1.1 6.4 1
DUF270 Protein of unknown function, DUF270 -3.7 6.5 1
Golgin_A5 Golgin subfamily A member 5 -0.4 6.6 1
DUF1679 Protein of unknown function (DUF1679) 0.4 6.6 1
DUF1348 Protein of unknown function (DUF1348) 1.0 6.8 1
RnaseA Pancreatic ribonuclease 0.5 7 1
Pec_lyase_N Pectate lyase, N terminus -0.0 7.1 1
Thiol_cytolysin Thiol-activated cytolysin -0.2 7.1 1
FliM Flagellar motor switch protein FliM 0.8 7.2 1
Neugrin Neugrin -0.3 7.2 1
PalH PalH/RIM21 -0.3 7.3 1
Pro_CA Carbonic anhydrase 1.3 7.4 1
SBP_bac_9 Periplasmic solute binding protein fa 0.5 7.4 1
APG12 Ubiquitin-like autophagy protein Apg1 0.9 7.5 1
DUF648 Family of unknown function (DUF648) -0.5 7.6 1
DUF1883 Domain of unknown function (DUF1883) 1.4 7.8 1
MSP1_C Merozoite surface protein 1 (MSP1) C- -1.4 7.9 1
MGDG_synth Monogalactosyldiacylglycerol (MGDG) s 1.5 8.1 1
Dynamin_M Dynamin central region 0.4 8.3 1
Ssl1 Ssl1-like -2.7 8.3 1
Invas_SpaK Invasion protein B family 2.1 8.4 1
Vac_Fusion Chordopoxvirus fusion protein -0.3 8.4 1
Pox_D2 Pox virus D2 protein -0.3 8.5 1
DUF1519 Protein of unknown function (DUF1519) -1.2 9.2 1
Peptidase_M24 metallopeptidase family M24 0.1 9.3 1
Orbi_VP6 Orbivirus helicase VP6 -1.7 9.3 1
DUF965 Bacterial protein of unknown function 0.7 9.4 1
Flu_PB2 Influenza RNA-dependent RNA polymeras -1.5 9.5 1
Cyclin Cyclin -0.1 9.5 1
UPF0560 Uncharacterised protein family UPF056 -2.1 9.5 1
DUF2374 Protein of unknown function (Duf2374 2.2 9.6 1
IpaD Invasion plasmid antigen IpaD -1.8 9.6 1
Not1 CCR4-Not complex component, Not1 -0.3 9.8 1
IFN-gamma Interferon gamma 0.2 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SelB-wing_2 1/1 27 35 .. 1 9 [. 4.3 3.7
Thr_dehydrat_C 1/2 33 47 .. 79 93 .] 3.0 2.9
Nrf1_DNA-bind 1/1 53 78 .. 189 214 .] 4.7 0.3
UPF0254 1/1 65 80 .. 151 166 .] 4.1 0.79
Ham1p_like 1/1 68 79 .. 192 203 .] 9.1 0.026
LRR_1 1/2 80 101 .. 1 25 [] 2.9 9.3
Prenylcys_lyase 1/1 130 142 .. 1 13 [. -0.4 5.5
Invas_SpaK 1/1 149 161 .. 69 81 .] 2.1 8.4
ERF 1/1 150 175 .. 1 34 [. 2.9 1.9
Sec66 1/1 169 202 .. 154 189 .] 4.0 0.59
DUF1679 1/1 201 213 .. 414 426 .] 0.4 6.6
DUF965 1/1 201 211 .. 69 79 .] 0.7 9.4
SBP_bac_9 1/1 211 236 .. 180 205 .. 0.5 7.4
MutS_IV 1/1 213 234 .. 1 22 [. 2.5 5.9
Golgin_A5 1/1 226 235 .. 1 10 [. -0.4 6.6
Gly_transf_sug 1/1 234 291 .. 1 67 [. 33.4 1.9e-09
DUF1883 1/1 242 255 .. 34 47 .. 1.4 7.8
DUF972 1/1 354 367 .. 1 14 [. 2.0 4.5
IFN-gamma 1/1 387 405 .. 1 19 [. 0.2 9.9
Vac_Fusion 1/1 399 414 .. 16 31 .. -0.3 8.4
XFP 1/1 447 455 .. 1 9 [. 1.1 5.3
DUF270 1/1 453 457 .. 1 5 [. -3.7 6.5
DUF2415 1/1 480 501 .. 16 35 .. 6.0 1.1
DUF2555 1/1 503 519 .. 1 17 [. 2.2 6.1
Mo25 1/1 558 571 .. 376 389 .] 2.7 0.95
Pox_D2 1/1 613 623 .. 148 160 .] -0.3 8.5
Pro_CA 1/1 617 632 .. 188 203 .] 1.3 7.4
Clp_N 1/1 664 680 .. 37 53 .] 4.2 2.4
Enterotoxin_a 1/1 736 754 .. 247 265 .] 4.8 0.36
Pec_lyase_N 1/1 746 754 .. 71 79 .] -0.0 7.1
PalH 1/1 772 785 .. 417 431 .] -0.3 7.3
DUF1992 1/1 834 844 .. 1 11 [. 3.5 4.2
Flu_PB2 1/1 839 851 .. 1 14 [. -1.5 9.5
DUF1764 1/1 871 894 .. 1 26 [. -0.7 4.1
Not1 1/1 873 890 .. 1 18 [. -0.3 9.8
DUF1519 1/1 891 908 .. 123 140 .. -1.2 9.2
DUF1803 1/1 906 920 .. 121 139 .] 3.0 2.6
14-3-3 1/1 912 949 .. 73 110 .. 0.2 5.7
Nup88 1/1 915 942 .. 697 723 .] -0.9 5.9
MSP1_C 1/1 924 946 .. 397 419 .. -1.4 7.9
DUF267 1/1 956 970 .. 352 366 .] 0.4 5.9
UPF0560 1/1 983 990 .. 1 8 [. -2.1 9.5
Cyclin 1/1 1009 1028 .. 1 20 [. -0.1 9.5
Ins_allergen_rp 1/1 1015 1024 .. 1 10 [. 3.2 4.7
DUF533 1/1 1053 1065 .. 196 208 .] 3.5 1.2
IpaD 1/1 1069 1082 .. 1 14 [. -1.8 9.6
UbiD 1/1 1217 1229 .. 436 448 .] 1.4 1.9
Neugrin 1/1 1220 1233 .. 1 14 [. -0.3 7.2
Ssl1 1/1 1228 1242 .. 1 15 [. -2.7 8.3
MGDG_synth 1/1 1256 1279 .. 81 104 .. 1.5 8.1
Thiol_cytolysin 1/1 1276 1286 .. 458 468 .] -0.2 7.1
FliM 1/1 1298 1312 .. 179 193 .] 0.8 7.2
DUF1779 1/1 1301 1307 .. 205 211 .] 1.3 0.91
Mur_ligase 1/1 1351 1368 .. 1 18 [. 2.1 5.5
DUF2124 1/1 1412 1420 .. 149 158 .] 1.4 5.8
LRR_1 2/2 1432 1453 .. 1 25 [] 1.4 24
Cohesin 1/1 1503 1526 .. 139 164 .] 1.8 5.8
Peptidase_M24 1/1 1518 1529 .. 279 290 .] 0.1 9.3
Thr_dehydrat_C 2/2 1554 1573 .. 57 77 .. 0.1 22
RnaseA 1/1 1555 1561 .. 123 129 .] 0.5 7
DUF2374 1/1 1582 1588 .. 1 7 [. 2.2 9.6
DUF1157 1/1 1601 1616 .. 229 244 .. 2.1 1.6
DUF807 1/1 1605 1619 .. 1 15 [. 4.2 0.64
Surp 1/1 1620 1638 .. 29 47 .] 4.6 2.3
RRN3 1/1 1631 1645 .. 655 669 .] 3.7 0.4
ComK 1/1 1642 1666 .. 1 25 [. 3.3 1.3
B5 1/1 1715 1735 .. 1 21 [. 3.2 2.5
Orbi_VP6 1/1 1750 1774 .. 7 31 .. -1.7 9.3
APG12 1/1 1752 1770 .. 1 25 [. 0.9 7.5
DUF1874 1/1 1804 1816 .. 110 122 .] 4.7 1.1
DUF648 1/1 1827 1848 .. 381 402 .] -0.5 7.6
CW_binding_1 1/16 1833 1847 .. 1 15 [. 4.8 2
CW_binding_1 2/16 1854 1873 .. 1 19 [] 14.0 0.0025
CW_binding_1 3/16 1881 1894 .. 6 19 .] 8.4 0.14
Dynamin_M 1/1 1930 1944 .. 170 184 .. 0.4 8.3
CW_binding_1 4/16 1946 1965 .. 1 19 [] 6.7 0.5
MBD 1/1 1953 1972 .. 48 66 .. 3.8 1.7
CW_binding_1 5/16 1967 1985 .. 1 19 [] 19.9 3.2e-05
RNA_pol 1/1 1969 1980 .. 522 533 .] 0.7 5.7
DUF1348 1/1 1973 1995 .. 102 124 .. 1.0 6.8
CW_binding_1 6/16 1987 2005 .. 1 19 [] 24.2 1.4e-06
CW_binding_1 7/16 2007 2025 .. 1 19 [] 14.8 0.0013
DUF2466 1/1 2013 2025 .. 113 125 .] 2.7 2.7
DUF595 1/1 2065 2072 .. 252 259 .] 2.2 5.5
CW_binding_1 8/16 2077 2093 .. 1 16 [. 4.4 2.8
CW_binding_1 9/16 2104 2117 .. 6 19 .] 12.4 0.0077
Citrus_P18 1/1 2110 2134 .. 143 167 .] 2.9 1.2
CW_binding_1 10/16 2119 2137 .. 1 19 [] 12.9 0.0054
Pox_G5 1/1 2129 2138 .. 548 557 .] 0.9 0.74
Oscp1 1/1 2137 2151 .. 170 184 .] 2.5 2.9
CW_binding_1 11/16 2139 2157 .. 1 19 [] 4.7 2.1
Ribophorin_II 1/1 2139 2157 .. 223 241 .. -0.1 2.4
Peptidase_M9 1/1 2152 2169 .. 106 123 .. 1.3 2.4
CW_binding_1 12/16 2209 2226 .. 1 15 [. 7.4 0.3
Slx4 1/1 2234 2255 .. 894 917 .] 1.7 0.96
Patched 1/1 2236 2250 .. 1 15 [. -1.1 6.4
CW_binding_1 13/16 2238 2251 .. 6 19 .] 10.7 0.028
CW_binding_1 14/16 2253 2271 .. 1 19 [] 14.9 0.0012
CW_binding_1 15/16 2274 2291 .. 2 19 .] 8.2 0.17
CW_binding_1 16/16 2323 2335 .. 1 13 [. 4.4 2.7
Alignments of top-scoring domains:
SelB-wing_2: domain 1 of 1, from 27 to 35: score 4.3, E = 3.7
*->lleaLaayH<-*
+l+aL++yH
gi|1961630 27 ILDALEEYH 35
Thr_dehydrat_C: domain 1 of 2, from 33 to 47: score 3.0, E = 2.9
CS EEECTTT-HHHHHCC
*->dyvdlsdneaakehL<-*
+y+++s n+++ ++L
gi|1961630 33 EYHNMSENTVVEKYL 47
Nrf1_DNA-bind: domain 1 of 1, from 53 to 78: score 4.7, E = 0.3
*->hALrkivinCYKyHGReDLLpaFaee<-*
+ L i i YK+ GR+ L +F+e
gi|1961630 53 NSLTDIYIDTYKKSGRNKALKKFKEY 78
UPF0254: domain 1 of 1, from 65 to 80: score 4.1, E = 0.79
*->ksGIkraLkllesflk<-*
ksG +aLk ++++l+
gi|1961630 65 KSGRNKALKKFKEYLV 80
Ham1p_like: domain 1 of 1, from 68 to 79: score 9.1, E = 0.026
CS HHHHHHHHHHHH
*->RgkALkklkkwL<-*
R kALkk+k++L
gi|1961630 68 RNKALKKFKEYL 79
LRR_1: domain 1 of 2, from 80 to 101: score 2.9, E = 9.3
CS T-EEEETTSSS.BCHSCHHHHHH HH
*->nLeeLdLsgCNPpsltgslpssl.nl<-*
e+L+L + N +lt +++++l+
gi|1961630 80 VTEVLELKN-N--NLT-PVEKNLhFV 101
Prenylcys_lyase: domain 1 of 1, from 130 to 142: score -0.4, E = 5.5
*->leetdwfiiNvlk<-*
+ +++ f+iN lk
gi|1961630 130 FYDSNAFLINTLK 142
Invas_SpaK: domain 1 of 1, from 149 to 161: score 2.1, E = 8.4
CS BTTSS-EEEEETT
*->aigelvllfrene<-*
ai++ +++fren
gi|1961630 149 AINDTLESFRENL 161
ERF: domain 1 of 1, from 150 to 175: score 2.9, E = 1.9
*->lyqalakvqkelkqpkKdlkvtannpfgkypyyk<-*
++ +l ++++l+ p+ d +n+f++ +
gi|1961630 150 INDTLESFRENLNNPRFD-----YNKFFRK---R 175
Sec66: domain 1 of 1, from 169 to 202: score 4.0, E = 0.59
*->NqaLrrRldailkrkeeekelWelkldkiesgflke<-*
N+ +r+R++ i +++++++ + + ++ e+ l+
gi|1961630 169 NKFFRKRMEIIYDKQKNFINYYKAQRE--ENPELII 202
DUF1679: domain 1 of 1, from 201 to 213: score 0.4, E = 6.6
*->LlEDvikvHesnl<-*
+++D++k+++sn
gi|1961630 201 IIDDIVKIYLSNE 213
DUF965: domain 1 of 1, from 201 to 211: score 0.7, E = 9.4
*->ilEELvksYLk<-*
i+ +vk YL+
gi|1961630 201 IIDDIVKIYLS 211
SBP_bac_9: domain 1 of 1, from 211 to 236: score 0.5, E = 7.4
CS HHHHHHHHHHHHHHHHHHHCTSSGGC
*->akayleeLekLDkearqklskipekk<-*
+++y +e+++L++++ ++l ki++++
gi|1961630 211 SNEYSKEIDELNTYIEESLNKIKQNS 236
MutS_IV: domain 1 of 1, from 213 to 234: score 2.5, E = 5.9
*->gfdeeLDelrdlleeleeelae<-*
+++ e+Del +ee+ + +++
gi|1961630 213 EYSKEIDELNTYIEESLNKIKQ 234
Golgin_A5: domain 1 of 1, from 226 to 235: score -0.4, E = 6.6
*->Enilnkidqn<-*
E+ lnki+qn
gi|1961630 226 EESLNKIKQN 235
Gly_transf_sug: domain 1 of 1, from 234 to 291: score 33.4, E = 1.9e-09
*->ydvilvtpdleslfkdtpaypwfqeafssardPGrwpKyynaaasDl
+ ++ +++e+ + ++++ ++qe rw+ + aaasD
gi|1961630 234 QNSGNDVRNFEEFKNGESFKLYEQELVE------RWN--L-AAASDI 271
lRlaiLykYGGiYlDtDvil<-*
lR+ L++ GG YlD D+ +
gi|1961630 272 LRISALKEIGGMYLDVDMLP 291
DUF1883: domain 1 of 1, from 242 to 255: score 1.4, E = 7.8
*->nFrsYKNGgrhtYh<-*
nF +KNG +++ +
gi|1961630 242 NFEEFKNGESFKLY 255
DUF972: domain 1 of 1, from 354 to 367: score 2.0, E = 4.5
*->MDKkeLFDqldeLE<-*
DK e+F +l ++E
gi|1961630 354 SDKSEIFSSLGDME 367
IFN-gamma: domain 1 of 1, from 387 to 405: score 0.2, E = 9.9
CS XXXXXXXXX-HCHHHHHHH
*->iLgssGcYCqdtfikeien<-*
++ + +YC ++k ien
gi|1961630 387 LISVKDSYCSNLIVKQIEN 405
Vac_Fusion: domain 1 of 1, from 399 to 414: score -0.3, E = 8.4
*->lfqlivkcCkrlneal<-*
++++i++++k+ln++l
gi|1961630 399 IVKQIENRYKILNNSL 414
XFP: domain 1 of 1, from 447 to 455: score 1.1, E = 5.3
*->trvLGkYlr<-*
+ +LGkYlr
gi|1961630 447 MMELGKYLR 455
DUF270: domain 1 of 1, from 453 to 457: score -3.7, E = 6.5
*->YLRlG<-*
YLR+G
gi|1961630 453 YLRVG 457
DUF2415: domain 1 of 1, from 480 to 501: score 6.0, E = 1.1
*->DLLviSEhqgrVHvi..DlRnl<-*
DLL + E++ ++H+i+ DlRn+
gi|1961630 480 DLLMFKEGSMNIHLIeaDLRNF 501
DUF2555: domain 1 of 1, from 503 to 519: score 2.2, E = 6.1
*->iskedleafteedvaeL<-*
isk +++ te++ a L
gi|1961630 503 ISKTNISQSTEQEMASL 519
Mo25: domain 1 of 1, from 558 to 571: score 2.7, E = 0.95
*->EKefiikqIesLpp<-*
+Ke++++ I+sL +
gi|1961630 558 DKEYLLEKISSLAR 571
Pox_D2: domain 1 of 1, from 613 to 623: score -0.3, E = 8.5
*->egsLvkvpYYYLP<-*
e+s v YYY P
gi|1961630 613 ENS--EVAYYYNP 623
Pro_CA: domain 1 of 1, from 617 to 632: score 1.3, E = 7.4
CS EEEEEETTTTEEEEEE
*->hGavYdietGevevld<-*
++ +Y+ +Ge+ ++d
gi|1961630 617 VAYYYNPGDGEIQEID 632
Clp_N: domain 1 of 1, from 664 to 680: score 4.2, E = 2.4
CS TTS-HHHHHHHHHHHHH
*->aGvdldalreaiekllg<-*
aG+d+d l ++ie +++
gi|1961630 664 AGLDVDSLSTEIETAID 680
Enterotoxin_a: domain 1 of 1, from 736 to 754: score 4.8, E = 0.36
CS HHHHGXXXXXHHHHHTTXX
*->llSdyqdefiiyngirdEL<-*
+ S +q e+ i+n +r EL
gi|1961630 736 IVSANQYEVRINNEGRREL 754
Pec_lyase_N: domain 1 of 1, from 746 to 754: score -0.0, E = 7.1
*->srNsTRReL<-*
++N+ RReL
gi|1961630 746 INNEGRREL 754
PalH: domain 1 of 1, from 772 to 785: score -0.3, E = 7.3
*->InnGdDmlfvdptsn<-*
I+ ++ ++++p++n
gi|1961630 772 ISS-KEYISFNPKEN 785
DUF1992: domain 1 of 1, from 834 to 844: score 3.5, E = 4.2
*->eslvEerIreA<-*
+vEerI+eA
gi|1961630 834 TQIVEERIEEA 844
Flu_PB2: domain 1 of 1, from 839 to 851: score -1.5, E = 9.5
*->LerikelkrLlsds<-*
eri+e k+L sds
gi|1961630 839 -ERIEEAKNLTSDS 851
DUF1764: domain 1 of 1, from 871 to 894: score -0.7, E = 4.1
*->KpkKkketaseDidfdslkdlkkkks<-*
++K + + D f+s +d++k ++
gi|1961630 871 -DLKQQNELD-DSHFISFEDISKTED 894
Not1: domain 1 of 1, from 873 to 890: score -0.3, E = 9.8
*->siLsELatirthdpedvl<-*
+++EL+ + +++ed++
gi|1961630 873 KQQNELDDSHFISFEDIS 890
DUF1519: domain 1 of 1, from 891 to 908: score -1.2, E = 9.2
*->KtKsGFKvRFlnkkGsDs<-*
Kt GF +RF+nk+ +s
gi|1961630 891 KTEDGFSIRFINKETGES 908
DUF1803: domain 1 of 1, from 906 to 920: score 3.0, E = 2.6
*->deqiWayvFideesliYqa<-*
+e+i F+++e++i+ +
gi|1961630 906 GESI----FVETEKEIFSE 920
14-3-3: domain 1 of 1, from 912 to 949: score 0.2, E = 5.7
CS --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTS-
*->ekkvelikeYRekiEkeLskicddvLklldkhLipkat<-*
e + e+ eY ++iE+e+s+i d++++ ++ +L++k +
gi|1961630 912 ETEKEIFSEYANHIEREISNIKDTIFDTVNGKLVKKVN 949
Nup88: domain 1 of 1, from 915 to 942: score -0.9, E = 5.9
*->qeiLkelgehIeemvkqikd.Irnhvgf<-*
+ei e + hIe+ + +ikd+I v+
gi|1961630 915 KEIFSEYANHIEREISNIKDtIFDTVNG 942
MSP1_C: domain 1 of 1, from 924 to 946: score -1.4, E = 7.9
*->qlekevstfnenitdgLnsrLkK<-*
++e+e+s ++ i d n +L K
gi|1961630 924 HIEREISNIKDTIFDTVNGKLVK 946
DUF267: domain 1 of 1, from 956 to 970: score 0.4, E = 5.9
*->rktieiAyFvIPNlg<-*
++t+++A+F+ + +g
gi|1961630 956 VNTLNAAFFIQSLIG 970
UPF0560: domain 1 of 1, from 983 to 990: score -2.1, E = 9.5
*->vtLKVQVs<-*
v KVQV+
gi|1961630 983 VAMKVQVY 990
Cyclin: domain 1 of 1, from 1009 to 1028: score -0.1, E = 9.5
*->dellesisrvlerllalnds<-*
+ ++ ++++++++l++l+++
gi|1961630 1009 ELVSTALDETIDLLPTLSEG 1028
Ins_allergen_rp: domain 1 of 1, from 1015 to 1024: score 3.2, E = 4.7
*->ldDflALlPv<-*
ld++++LlP+
gi|1961630 1015 LDETIDLLPT 1024
DUF533: domain 1 of 1, from 1053 to 1065: score 3.5, E = 1.2
*->dpaLveqlEaqvg<-*
dp L++++Ea +g
gi|1961630 1053 DPLLRQEIEAKIG 1065
IpaD: domain 1 of 1, from 1069 to 1082: score -1.8, E = 9.6
*->qNisaltnsiivae<-*
N +a t ii+++
gi|1961630 1069 VNLTAATTAIITSS 1082
UbiD: domain 1 of 1, from 1217 to 1229: score 1.4, E = 1.9
*->rDlvIipnapgds<-*
+Dl+++pnap+
gi|1961630 1217 KDLMVLPNAPNRV 1229
Neugrin: domain 1 of 1, from 1220 to 1233: score -0.3, E = 7.2
*->mEAPGAPPRtLtWE<-*
m P AP R WE
gi|1961630 1220 MVLPNAPNRVFAWE 1233
Ssl1: domain 1 of 1, from 1228 to 1242: score -2.7, E = 8.3
*->kgYtWEggYvdGeRs<-*
+ +WE+g G+Rs
gi|1961630 1228 RVFAWETGWTPGLRS 1242
MGDG_synth: domain 1 of 1, from 1256 to 1279: score 1.5, E = 8.1
*->DHNhksilaklatffakkLaalLe<-*
DH ++ ++ +++ f+a++L+++L+
gi|1961630 1256 DHYKGEFYWRYFAFIADALITTLK 1279
Thiol_cytolysin: domain 1 of 1, from 1276 to 1286: score -0.2, E = 7.1
*->TTLYPkvsdtv<-*
TTL P+++dt
gi|1961630 1276 TTLKPRYEDTN 1286
FliM: domain 1 of 1, from 1298 to 1312: score 0.8, E = 7.2
*->lclPyitiEPIrskL<-*
++ P it E Ir+kL
gi|1961630 1298 FIVPIITTEHIREKL 1312
DUF1779: domain 1 of 1, from 1301 to 1307: score 1.3, E = 0.91
*->PIITtEY<-*
PIITtE
gi|1961630 1301 PIITTEH 1307
Mur_ligase: domain 1 of 1, from 1351 to 1368: score 2.1, E = 5.5
CS EEEEESTTSHHHHHHHHH
*->eihfigidsrgmspgalF<-*
++ ++ids ++++g+l+
gi|1961630 1351 VVRDVTIDSDKIKKGDLI 1368
DUF2124: domain 1 of 1, from 1412 to 1420: score 1.4, E = 5.8
*->IDadIePVtV<-*
I+a+Ie V++
gi|1961630 1412 INAIIE-VDL 1420
LRR_1: domain 2 of 2, from 1432 to 1453: score 1.4, E = 24
CS T-EEEETTSSS.BCHSCH HHHHH HH
*->nLeeLdLsgCNPpsltgs.lpssl.nl<-*
L+ L L++ N +++ ++++ ++ +
gi|1961630 1432 ELKILMLNS-N--HIQ-QkIDY-IgFN 1453
Cohesin: domain 1 of 1, from 1503 to 1526: score 1.8, E = 5.8
CS EEEEECCCTCE-C-EEEE.E-EEES-
*->sslgafddntlteisvvtatnGsvtV<-*
+ ++ +++n+l++++v+t + v++
gi|1961630 1503 KPSFGYYSNNLKDVKVIT-KDN-VNI 1526
Peptidase_M24: domain 1 of 1, from 1518 to 1529: score 0.1, E = 9.3
CS EECSSCEECSTC
*->vVtedGfenLTf<-*
v+t+d++ +LT
gi|1961630 1518 VITKDNVNILTG 1529
Thr_dehydrat_C: domain 2 of 2, from 1554 to 1573: score 0.1, E = 22
CS EEE-SSTHHHHHHHHHHTSSS
*->Gvqvsqasdlaefierleklg<-*
Gv+++ +s ae++++++k+g
gi|1961630 1554 GVHLD-ESGVAEILKFMNKKG 1573
RnaseA: domain 1 of 1, from 1555 to 1561: score 0.5, E = 7
CS EEEEEEC
*->VHFDasv<-*
VH+D+s+
gi|1961630 1555 VHLDESG 1561
DUF2374: domain 1 of 1, from 1582 to 1588: score 2.2, E = 9.6
*->MStLESv<-*
MS LESv
gi|1961630 1582 MSFLESV 1588
DUF1157: domain 1 of 1, from 1601 to 1616: score 2.1, E = 1.6
*->KnNyInDKkFIisGet<-*
K+N+I D +FIisG t
gi|1961630 1601 KINFILDANFIISGTT 1616
DUF807: domain 1 of 1, from 1605 to 1619: score 4.2, E = 0.64
*->mLaAhLiFsGqipiG<-*
+L A+ i sG ++iG
gi|1961630 1605 ILDANFIISGTTSIG 1619
Surp: domain 1 of 1, from 1620 to 1638: score 4.6, E = 2.3
CS GG-TTT-SSSSHHHHHHHH
*->rFnFLkpsndplhkYYkkk<-*
+F+F+ ++nd+ ++Y+ k+
gi|1961630 1620 QFEFICDENDNIQPYFIKF 1638
RRN3: domain 1 of 1, from 1631 to 1645: score 3.7, E = 0.4
*->ispnyiewSevkgdy<-*
i+p++i++ + ++y
gi|1961630 1631 IQPYFIKFNTLETTY 1645
ComK: domain 1 of 1, from 1642 to 1666: score 3.3, E = 1.3
*->diskeiYevnkgtmvilPkyDesdq<-*
+ + Y+ n m++ P yD +d+
gi|1961630 1642 ETTYTLYVGNRQNMIVEPNYDLDDS 1666
B5: domain 1 of 1, from 1715 to 1735: score 3.2, E = 2.5
CS ---EEE-HHHHHHHHT----H
*->prtitlrlerinrlLGlelsa<-*
p +i l++ +in+ + +++ +
gi|1961630 1715 PEVIVLDANYINEKINVNIND 1735
Orbi_VP6: domain 1 of 1, from 1750 to 1774: score -1.7, E = 9.3
*->VikrsseeLkqRqIqinlvdwfese<-*
++ + see k q++i++v+ f+++
gi|1961630 1750 ILMSTSEENKVSQVKIRFVNVFKDK 1774
APG12: domain 1 of 1, from 1752 to 1770: score 0.9, E = 7.5
CS ----------E......EEEEEEEE
*->asTerpkSdkkeKNiqKvqirLkAi<-*
+sT++++ ++ v ir+ ++
gi|1961630 1752 MSTSEENKVSQ------VKIRFVNV 1770
DUF1874: domain 1 of 1, from 1804 to 1816: score 4.7, E = 1.1
*->YedGkIgyslylv<-*
YedG Igy+l lv
gi|1961630 1804 YEDGLIGYDLGLV 1816
DUF648: domain 1 of 1, from 1827 to 1848: score -0.5, E = 7.6
*->sfqkvGgivliytdslplqkpf<-*
+f ++ +++++ dsl kp+
gi|1961630 1827 NFGMMVSGLIYINDSLYYFKPP 1848
CW_binding_1: domain 1 of 16, from 1833 to 1847: score 4.8, E = 2
CS SEEEEETTEEEEEET
*->ngWikdngnWYYfds<-*
+g i++n++ YYf++
gi|1961630 1833 SGLIYINDSLYYFKP 1847
CW_binding_1: domain 2 of 16, from 1854 to 1873: score 14.0, E = 0.0025
CS SEEEEETTEEEEE ETTSCB
*->ngWikdngnWYYf.dsdGkm<-*
+g++++++++YYf+ ++G +
gi|1961630 1854 TGFVTVGDDKYYFnPTNGGA 1873
CW_binding_1: domain 3 of 16, from 1881 to 1894: score 8.4, E = 0.14
CS ETTEEEEEETTSCB
*->dngnWYYfdsdGkm<-*
+n++ YYf+++G +
gi|1961630 1881 INDKNYYFNQSGIL 1894
Dynamin_M: domain 1 of 1, from 1930 to 1944: score 0.4, E = 8.3
CS XXXXXXXXXXXXXXX
*->lirsdIrtaernyrG<-*
+i+++I ++e+nyrG
gi|1961630 1930 IIDENIYYFEDNYRG 1944
CW_binding_1: domain 4 of 16, from 1946 to 1965: score 6.7, E = 0.5
CS SEEEEETTEEEEE ETTSCB
*->ngWikdngnWYYf.dsdGkm<-*
+W++ +g YYf+ ++Gk+
gi|1961630 1946 VEWKELDGEMYYFsPETGKA 1965
MBD: domain 1 of 1, from 1953 to 1972: score 3.8, E = 1.7
*->fDVyYysP.tGkklrsksev<-*
++ yY+sP+tGk+++ +++
gi|1961630 1953 GEMYYFSPeTGKAFKGLNQI 1972
CW_binding_1: domain 5 of 16, from 1967 to 1985: score 19.9, E = 3.2e-05
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g ++++++YYf+sdG m
gi|1961630 1967 KGLNQIGDDKYYFNSDGIM 1985
RNA_pol: domain 1 of 1, from 1969 to 1980: score 0.7, E = 5.7
CS GGGGGG-TTTBX
*->lkeileSdYffn<-*
l++i +++Y+fn
gi|1961630 1969 LNQIGDDKYYFN 1980
DUF1348: domain 1 of 1, from 1973 to 1995: score 1.0, E = 6.8
*->GnEnWeFdeeGLmkrReAsindl<-*
G +++ F+ +G+m++ + sind+
gi|1961630 1973 GDDKYYFNSDGIMQKGFVSINDK 1995
CW_binding_1: domain 6 of 16, from 1987 to 2005: score 24.2, E = 1.4e-06
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g++ +n+++YYfd++G+m
gi|1961630 1987 KGFVSINDKKYYFDDSGVM 2005
CW_binding_1: domain 7 of 16, from 2007 to 2025: score 14.8, E = 0.0013
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
g+i+++g+++Yf ++G+m
gi|1961630 2007 VGYIEIDGKYFYFAENGEM 2025
DUF2466: domain 1 of 1, from 2013 to 2025: score 2.7, E = 2.7
*->dgeyvSFrEeGlL<-*
dg+y+ F+E+G +
gi|1961630 2013 DGKYFYFAENGEM 2025
DUF595: domain 1 of 1, from 2065 to 2072: score 2.2, E = 5.5
*->kIYyfDYv<-*
kIYyfDY
gi|1961630 2065 KIYYFDYS 2072
CW_binding_1: domain 8 of 16, from 2077 to 2093: score 4.4, E = 2.8
CS SEEEEE TTEEEEEETT
*->ngWikd.ngnWYYfdsd<-*
gW+ ++g++YYfd+d
gi|1961630 2077 VGWKDLeDGSKYYFDED 2093
CW_binding_1: domain 9 of 16, from 2104 to 2117: score 12.4, E = 0.0077
CS ETTEEEEEETTSCB
*->dngnWYYfdsdGkm<-*
+n++ YYf++dG m
gi|1961630 2104 INDGQYYFNDDGIM 2117
Citrus_P18: domain 1 of 1, from 2110 to 2134: score 2.9, E = 1.2
*->WFYnnGtFqnGLtRCnnLvaLFsat<-*
+F + G+ q G + nn v Fs
gi|1961630 2110 YFNDDGIMQVGFVTINNKVFYFSDS 2134
CW_binding_1: domain 10 of 16, from 2119 to 2137: score 12.9, E = 0.0054
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
g++++n++ +Yf ++G +
gi|1961630 2119 VGFVTINNKVFYFSDSGII 2137
Pox_G5: domain 1 of 1, from 2129 to 2138: score 0.9, E = 0.74
*->FYFnksiiIk<-*
FYF++s iI+
gi|1961630 2129 FYFSDSGIIE 2138
Oscp1: domain 1 of 1, from 2137 to 2151: score 2.5, E = 2.9
*->ledgvQnRqdGsFvl<-*
+e+gvQn +d +F++
gi|1961630 2137 IESGVQNIDDNYFYI 2151
CW_binding_1: domain 11 of 16, from 2139 to 2157: score 4.7, E = 2.1
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g +++++n++Y+d++G
gi|1961630 2139 SGVQNIDDNYFYIDEKGIV 2157
Ribophorin_II: domain 1 of 1, from 2139 to 2157: score -0.1, E = 2.4
*->divekidDlvarlDEksvv<-*
+ v+ idD +++DEk+ v
gi|1961630 2139 SGVQNIDDNYFYIDEKGIV 2157
Peptidase_M9: domain 1 of 1, from 2152 to 2169: score 1.3, E = 2.4
*->DgntrveVgvfvseedyk<-*
D + +v+ gvf++++ yk
gi|1961630 2152 DEKGIVQIGVFDTSDEYK 2169
CW_binding_1: domain 12 of 16, from 2209 to 2226: score 7.4, E = 0.3
CS SEEEEE T TEEEEEET
*->ngWikd..n.gnWYYfds<-*
+gWi+d +n++++YYf++
gi|1961630 2209 TGWIYDmeNeSDKYYFNP 2226
Slx4: domain 1 of 1, from 2234 to 2255: score 1.7, E = 0.96
*->fVeLiDDslIreWcDklGIclrnd<-*
++ LiDD I+ + D++GI ++
gi|1961630 2234 GINLIDD--IKYYFDENGIMRTGL 2255
Patched: domain 1 of 1, from 2236 to 2250: score -1.1, E = 6.4
*->llsldivytrtpdDi<-*
+l++di y++++++i
gi|1961630 2236 NLIDDIKYYFDENGI 2250
CW_binding_1: domain 13 of 16, from 2238 to 2251: score 10.7, E = 0.028
CS ETTEEEEEETTSCB
*->dngnWYYfdsdGkm<-*
+++ +YYfd++G m
gi|1961630 2238 IDDIKYYFDENGIM 2251
CW_binding_1: domain 14 of 16, from 2253 to 2271: score 14.9, E = 0.0012
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g i +n YYf+++G+m
gi|1961630 2253 TGLISFENNDYYFNENGEM 2271
CW_binding_1: domain 15 of 16, from 2274 to 2291: score 8.2, E = 0.17
CS EEEEETTEEEEEETTSCB
*->gWikdngnWYYfdsdGkm<-*
g+i++ ++ +Yf +dG+m
gi|1961630 2274 GYINIEDKMFYFGEDGVM 2291
CW_binding_1: domain 16 of 16, from 2323 to 2335: score 4.4, E = 2.7
CS SEEEEETTEEEEE
*->ngWikdngnWYYf<-*
+gW +++ YYf
gi|1961630 2323 TGWLDLDEKRYYF 2335
//