hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 196182717.fa
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Query sequence: gi|196182717|gb|EDX77702.1|
Accession: [none]
Description: Putative Ig domain family [Microcoleus chthonoplastes PCC 7420]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FG-GAP FG-GAP repeat 270.1 5.1e-78 14
HemolysinCabind Hemolysin-type calcium-binding repeat 176.6 2.3e-52 11
He_PIG Putative Ig domain 62.9 4.4e-17 2
HYR HYR domain 20.6 1.8e-05 3
PKD PKD domain 14.6 0.0006 3
SoxZ Sulphur oxidation protein SoxZ 9.7 0.021 2
DUF58 Protein of unknown function DUF58 8.9 0.086 1
Dockerin_1 Dockerin type I repeat 9.0 0.12 8
Big_1 Bacterial Ig-like domain (group 1) 4.7 0.45 2
MNNL N terminus of Notch ligand 6.2 0.54 2
BcsB Bacterial cellulose synthase subunit 3.2 0.8 2
Hema_stalk Influenza C hemagglutinin stalk 3.9 0.99 2
Flagellin_IN Flagellin hook IN motif 5.5 1.1 3
Big_2 Bacterial Ig-like domain (group 2) 4.7 1.1 1
Omega-toxin Omega-atracotoxin 2.6 1.8 1
Collar Phage Tail Collar Domain 4.6 1.9 1
I-set Immunoglobulin I-set domain 4.1 1.9 2
GSH-S_ATP Prokaryotic glutathione synthetase, A 2.3 2.8 1
Lysis_S Lysis protein S 2.5 2.8 1
PrgH Type III secretion system protein Prg -1.5 3.1 1
Big_3 Bacterial Ig-like domain (group 3) 4.0 3.4 1
CBM_6 Carbohydrate binding module (family 6 1.9 3.6 1
PS_pyruv_trans Polysaccharide pyruvyl transferase 1.0 4 1
TraB_pillus TraB pilus assembly protein 1.0 4.5 1
RtxA RtxA repeat 4.2 4.9 2
DUF2278 Uncharacterized conserved protein (DU 0.3 5.6 1
RNA_pol DNA-dependent RNA polymerase 0.6 5.8 1
Lamp Lysosome-associated membrane glycopro 0.7 5.9 1
SecG Preprotein translocase SecG subunit 2.9 6 1
Josephin Josephin 0.8 6.5 2
DUF1403 Protein of unknown function (DUF1403) 0.8 6.6 1
ETX_MTX2 Clostridium epsilon toxin ETX/Bacillu 0.7 6.8 1
MoeA_C MoeA C-terminal region (domain IV) 2.0 7.9 1
SH3BGR SH3-binding, glutamic acid-rich prote 1.3 8.1 1
BiPBP_C Penicillin-Binding Protein C-terminus 1.4 8.3 1
FBPase_glpX Bacterial fructose-1,6-bisphosphatase -0.4 8.3 1
Linker_histone linker histone H1 and H5 family 2.3 9.3 2
DUF1964 Domain of unknown function (DUF1964) 1.8 9.5 1
PPV_E1_N E1 Protein, N terminal domain 0.4 9.6 1
Lipase_GDSL GDSL-like Lipase/Acylhydrolase -0.7 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FBPase_glpX 1/1 52 59 .. 328 335 .] -0.4 8.3
Lysis_S 1/1 132 154 .. 1 24 [. 2.5 2.8
SH3BGR 1/1 206 216 .. 94 104 .] 1.3 8.1
FG-GAP 1/14 232 265 .. 1 36 [] 19.8 8.6e-05
Dockerin_1 1/8 241 246 .. 1 6 [. 0.6 48
RNA_pol 1/1 274 293 .. 1 20 [. 0.6 5.8
FG-GAP 2/14 293 316 .. 1 36 [] 8.8 0.14
Dockerin_1 2/8 301 306 .. 1 6 [. 2.1 16
DUF1403 1/1 351 356 .. 331 336 .] 0.8 6.6
FG-GAP 3/14 362 396 .. 1 36 [] 13.2 0.0072
Dockerin_1 3/8 370 375 .. 1 6 [. 0.6 48
Lipase_GDSL 1/1 393 399 .. 1 7 [. -0.7 9.8
FG-GAP 4/14 430 468 .. 1 36 [] 22.3 1.6e-05
Dockerin_1 4/8 438 443 .. 1 6 [. 1.2 33
PPV_E1_N 1/1 453 464 .. 1 14 [. 0.4 9.6
PrgH 1/1 484 494 .. 401 411 .. -1.5 3.1
PS_pyruv_trans 1/1 507 527 .. 1 22 [. 1.0 4
FG-GAP 5/14 511 535 .. 7 36 .] 11.2 0.029
BcsB 1/2 538 573 .. 1 38 [. 0.5 4.3
FG-GAP 6/14 569 608 .. 1 36 [] 20.7 4.7e-05
BcsB 2/2 611 646 .. 1 38 [. 2.7 1.1
DUF2278 1/1 636 644 .. 272 281 .] 0.3 5.6
FG-GAP 7/14 642 670 .. 1 36 [] 12.1 0.016
Dockerin_1 5/8 651 657 .. 1 7 [. 2.6 11
Flagellin_IN 1/3 717 772 .. 1 63 [] 3.0 5.5
ETX_MTX2 1/1 742 756 .. 264 278 .] 0.7 6.8
Lamp 1/1 750 763 .. 1 14 [. 0.7 5.9
Flagellin_IN 2/3 834 858 .. 4 28 .. 1.7 13
He_PIG 1/2 859 904 .. 1 61 [] 21.0 3.6e-05
Big_1 1/2 878 911 .. 76 106 .] 3.7 0.93
CBM_6 1/1 880 913 .. 94 125 .. 1.9 3.6
HYR 1/3 890 915 .. 59 86 .] 6.3 0.3
BiPBP_C 1/1 896 911 .. 78 94 .] 1.4 8.3
He_PIG 2/2 957 999 .. 1 61 [] 41.9 4e-11
PKD 1/3 987 1010 .. 69 92 .] 10.9 0.0085
Big_1 2/2 991 1008 .. 88 106 .] 1.0 6.8
FG-GAP 8/14 1041 1079 .. 1 36 [] 22.7 1.2e-05
Flagellin_IN 3/3 1090 1109 .. 1 20 [. 0.9 22
FG-GAP 9/14 1114 1142 .. 1 36 [] 25.1 2.5e-06
Dockerin_1 6/8 1122 1127 .. 1 6 [. 0.6 48
Hema_stalk 1/2 1127 1136 .. 1 12 [. 1.8 3.8
GSH-S_ATP 1/1 1151 1163 .. 165 177 .] 2.3 2.8
FG-GAP 10/14 1179 1211 .. 7 36 .] 23.7 6.3e-06
Linker_histone 1/2 1217 1227 .. 68 78 .] 1.2 19
MNNL 1/2 1219 1225 .. 1 7 [. 3.1 3.9
Josephin 1/2 1230 1240 .. 182 192 .] 0.4 8.5
FG-GAP 11/14 1252 1284 .. 7 36 .] 26.8 7.6e-07
Dockerin_1 7/8 1254 1259 .. 1 6 [. 0.6 48
Linker_histone 2/2 1290 1300 .. 68 78 .] 1.2 19
MNNL 2/2 1292 1298 .. 1 7 [. 3.1 3.9
Josephin 2/2 1303 1313 .. 182 192 .] 0.4 8.5
FG-GAP 12/14 1325 1356 .. 7 36 .] 26.7 8.5e-07
Dockerin_1 8/8 1327 1332 .. 1 6 [. 0.6 48
FG-GAP 13/14 1390 1428 .. 1 36 [] 17.1 0.00053
FG-GAP 14/14 1462 1492 .. 1 36 [] 20.0 7.6e-05
Hema_stalk 2/2 1476 1486 .. 1 13 [. 2.1 3.2
DUF58 1/1 1484 1497 .. 93 106 .] 8.9 0.086
Collar 1/1 1605 1618 .. 44 57 .] 4.6 1.9
TraB_pillus 1/1 1616 1629 .. 464 477 .] 1.0 4.5
SoxZ 1/2 1712 1739 .. 77 104 .] 4.9 0.62
Big_3 1/1 1718 1739 .. 52 70 .] 4.0 3.4
HYR 2/3 1720 1739 .. 66 86 .] 10.5 0.017
PKD 2/3 1722 1739 .. 75 92 .] 3.0 2.2
I-set 1/2 1728 1739 .. 85 96 .] 3.3 3.1
Big_2 1/1 1732 1750 .. 72 90 .] 4.7 1.1
MoeA_C 1/1 1793 1813 .. 62 83 .] 2.0 7.9
Omega-toxin 1/1 1795 1805 .. 27 37 .] 2.6 1.8
DUF1964 1/1 1828 1843 .. 17 32 .. 1.8 9.5
PKD 3/3 1832 1849 .. 75 92 .] 0.7 11
SoxZ 2/2 1931 1953 .. 82 104 .] 4.8 0.65
HYR 3/3 1935 1953 .. 67 86 .] 3.7 1.8
I-set 2/2 1942 1953 .. 85 96 .] 0.8 17
HemolysinCabind 1/11 1962 1979 .. 1 18 [] 13.8 0.0052
HemolysinCabind 2/11 1980 1997 .. 1 18 [] 12.2 0.016
HemolysinCabind 3/11 1998 2015 .. 1 18 [] 14.8 0.0026
HemolysinCabind 4/11 2016 2033 .. 1 18 [] 18.8 0.00016
HemolysinCabind 5/11 2034 2051 .. 1 18 [] 16.0 0.0011
HemolysinCabind 6/11 2052 2069 .. 1 18 [] 15.4 0.0017
HemolysinCabind 7/11 2070 2087 .. 1 18 [] 14.8 0.0025
HemolysinCabind 8/11 2088 2105 .. 1 18 [] 18.5 0.00019
RtxA 1/2 2098 2115 .. 2 19 .] 2.8 12
HemolysinCabind 9/11 2106 2123 .. 1 18 [] 21.1 3.1e-05
HemolysinCabind 10/11 2124 2141 .. 1 18 [] 17.2 0.00049
HemolysinCabind 11/11 2142 2159 .. 1 18 [] 13.8 0.005
SecG 1/1 2144 2163 .. 34 58 .. 2.9 6
RtxA 2/2 2153 2171 .. 1 19 [] 1.4 33
Alignments of top-scoring domains:
FBPase_glpX: domain 1 of 1, from 52 to 59: score -0.4, E = 8.3
*->vRfIdsiH<-*
+R I++iH
gi|1961827 52 CRNIQAIH 59
Lysis_S: domain 1 of 1, from 132 to 154: score 2.5, E = 2.8
*->mdKittgvaYgtsAgsaGyWlLql<-*
Ki+ +v + sA+ G W Lq+
gi|1961827 132 -AKIAASVNLTGSAALGGDWDLQV 154
SH3BGR: domain 1 of 1, from 206 to 216: score 1.3, E = 8.1
CS TT-HHHHCT--
*->antleeFLkLa<-*
+n l++FL La
gi|1961827 206 SNSLQSFLNLA 216
FG-GAP: domain 1 of 14, from 232 to 265: score 19.8, E = 8.6e-05
CS CCSCEEEC -TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvyll<-*
+ + ++++D+n+DG++Dl++++P ++ gs +++
gi|1961827 232 WDRRFSPAgDINNDGIDDLIISVP----ENpRGSYVVF 265
Dockerin_1: domain 1 of 8, from 241 to 246: score 0.6, E = 48
CS -TT-SS
*->DvNgDG<-*
D+N+DG
gi|1961827 241 DINNDG 246
RNA_pol: domain 1 of 1, from 274 to 293: score 0.6, E = 5.8
CS -EE-H..HHHHHHHHHHHHH
*->GrplgkdpsGlkwLKIygAN<-*
G + +d++G ++++Iyg+N
gi|1961827 274 GIVELSDINGSNGFRIYGGN 293
FG-GAP: domain 2 of 14, from 293 to 316: score 8.8, E = 0.14
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCCTSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggtdgsvyll<-*
+ + agD+nGDG++Dl + + ++
gi|1961827 293 NDFVRDAGDVNGDGIDDLMI------------GDAW 316
Dockerin_1: domain 2 of 8, from 301 to 306: score 2.1, E = 16
CS -TT-SS
*->DvNgDG<-*
DvNgDG
gi|1961827 301 DVNGDG 306
DUF1403: domain 1 of 1, from 351 to 356: score 0.8, E = 6.6
*->FRlfGL<-*
FR++G+
gi|1961827 351 FRIYGV 356
FG-GAP: domain 3 of 14, from 362 to 396: score 13.2, E = 0.0072
CS CCSCEEEC-TTSSSSSEEEEEETCCC SCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgad..ggt.dgsvyll<-*
++ +gD+n+DG++Dl++ +++g+ +++v+++
gi|1961827 362 GAIFGDVGDINNDGINDLII----LEgsDGGaNSAVVVF 396
Dockerin_1: domain 3 of 8, from 370 to 375: score 0.6, E = 48
CS -TT-SS
*->DvNgDG<-*
D+N+DG
gi|1961827 370 DINNDG 375
Lipase_GDSL: domain 1 of 1, from 393 to 399: score -0.7, E = 9.8
CS EEEEE-T
*->ivafGDS<-*
+v+fGDS
gi|1961827 393 VVVFGDS 399
FG-GAP: domain 4 of 14, from 430 to 468: score 22.3, E = 1.6e-05
CS CCSCEEEC-TTSSSSSEEEEEETCCC SCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgad....ggt.d.gsvyll<-*
+ + gDlnGDG++Dl++ ga+ +++g + g++y+
gi|1961827 430 SENAFSSGDLNGDGIDDLII---GASmadpNGKnEaGETYVI 468
Dockerin_1: domain 4 of 8, from 438 to 443: score 1.2, E = 33
CS -TT-SS
*->DvNgDG<-*
D+NgDG
gi|1961827 438 DLNGDG 443
PPV_E1_N: domain 1 of 1, from 453 to 464: score 0.4, E = 9.6
*->MADkgpeGTngege<-*
MAD p+G n+ ge
gi|1961827 453 MAD--PNGKNEAGE 464
PrgH: domain 1 of 1, from 484 to 494: score -1.5, E = 3.1
*->KSflyGpngYV<-*
+Sfl+G+ng+V
gi|1961827 484 RSFLNGSNGFV 494
PS_pyruv_trans: domain 1 of 1, from 507 to 527: score 1.0, E = 4
*->killlgyygfigNtGDeAIlka<-*
+++lg+ + +N+GD +I+ +
gi|1961827 507 SVSYLGDINN-DNVGDLLIGTG 527
FG-GAP: domain 5 of 14, from 511 to 535: score 11.2, E = 0.029
CS EC-TTSSSSSEEEEEETCCCSCC T SEEEEE
*->agDlnGDGrpDlvvgaPgadggt.d.gsvyll<-*
+gD+n+D Dl++ gt+d g+ y+l
gi|1961827 511 LGDINNDNVGDLLI-------GTgDaGESYVL 535
BcsB: domain 1 of 2, from 538 to 573: score 0.5, E = 4.3
*->aadpasstrtltFrqLGapggpltLrGvdpergipFgv<-*
++ ++ t t +++L + ++++ Gvd e + +F+v
gi|1961827 538 GSQ-VGATGTRELSDLNG-SNGFVINGVDVEDQSGFSV 573
FG-GAP: domain 6 of 14, from 569 to 608: score 20.7, E = 4.7e-05
CS CCSCEEEC -TTSSSSSEEEEEETCCC SCC T SEEEEE
*->fgssvaag.DlnGDGrpDlvvgaPgad.ggt.d.gsvyll<-*
g sv++ D+n DG++Dl++gaP ad +g+ d g y+
gi|1961827 569 SGFSVSGIaDINHDGINDLLIGAPDADaNGNiDaGVSYVV 608
BcsB: domain 2 of 2, from 611 to 646: score 2.7, E = 1.1
*->aadpasstrtltFrqLGapggpltLrGvdpergipFgv<-*
++ ++st tl +++L + +++++ G++ + ++F v
gi|1961827 611 SSQ-IGSTGTLELSELNG-SNGFAINGIHTDDELGFAV 646
DUF2278: domain 1 of 1, from 636 to 644: score 0.3, E = 5.6
*->vfhTDDarGh<-*
+ hTDD++G+
gi|1961827 636 I-HTDDELGF 644
FG-GAP: domain 7 of 14, from 642 to 670: score 12.1, E = 0.016
CS CCSCEEEC -TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvyll<-*
g +v+ ++D+nGDG +Dl + ad+++++ l
gi|1961827 642 LGFAVSHAgDINGDGVDDLMI----ADERGdS-----L 670
Dockerin_1: domain 5 of 8, from 651 to 657: score 2.6, E = 11
CS -TT-SS-
*->DvNgDGk<-*
D+NgDG+
gi|1961827 651 DINGDGV 657
Flagellin_IN: domain 1 of 3, from 717 to 772: score 3.0, E = 5.5
*->tltinggggkensvadgvdislsagdslaa.ladaINsaaaktGVsA
++t++ ++++ v+ + + +++l +++ + + +++++t+++A
gi|1961827 717 EFTLTDLNSTT------VANTTVQITNLLDgVDEVLTANTSGTNITA 757
svdadtnggrLvltstt<-*
++++t g L+lt +
gi|1961827 758 HYNTNT--GMLSLTGVD 772
ETX_MTX2: domain 1 of 1, from 742 to 756: score 0.7, E = 6.8
CS EEETTT-EEEEEEE-
*->vtetplsnvsgesie<-*
v+e+++ n+sg++i+
gi|1961827 742 VDEVLTANTSGTNIT 756
Lamp: domain 1 of 1, from 750 to 763: score 0.7, E = 5.9
*->YsvteltfsynlsD<-*
+s t++t +yn+++
gi|1961827 750 TSGTNITAHYNTNT 763
Flagellin_IN: domain 2 of 3, from 834 to 858: score 1.7, E = 13
*->inggggkensvadgvdislsagdsl<-*
i+g+++++++v+++++ ++++gd+l
gi|1961827 834 ITGVDEDNSYVYNIITSDADSGDTL 858
He_PIG: domain 1 of 2, from 859 to 904: score 21.0, E = 3.6e-05
*->tytlTkpsdgslasysttpggggLPsGLtL...dsstGritGtPtpt
t ++T +LP +L++ ++ t ++tGtPt
gi|1961827 859 TINAT-----------------TLPGWLSFidnGDGTATLTGTPTND 888
vqpGsytftvtatdgsg<-*
q G ++ + +td++g
gi|1961827 889 -QVGDHNVELVVTDSAG 904
Big_1: domain 1 of 2, from 878 to 911: score 3.7, E = 0.93
CS EEEEE-S S-EEEEEEEEET.TECEEEEEEEE
*->tvtLTst....kaGtytVtAslanngatsvdaktV<-*
t+tLT+t++++ +G++ V+ ++ ++a + d++ +
gi|1961827 878 TATLTGTptndQVGDHNVELVVT-DSAGATDNQIF 911
CBM_6: domain 1 of 1, from 880 to 913: score 1.9, E = 3.6
CS EEEEEEEEES EEEEEEEEEES-TTS.. ---EE
*->tvtanVtlpt.GvhdlyLvftggaggsd.ylfNi<-*
t t++ t+ + G h++ Lv+t +ag+ d++ f+i
gi|1961827 880 TLTGTPTNDQvGDHNVELVVTDSAGATDnQIFDI 913
HYR: domain 1 of 3, from 890 to 915: score 6.3, E = 0.3
*->vGEettVtYtatDnaGNeAdsCtFtVtV<-*
vG ++ V+ ++tD+aG ++ F++tV
gi|1961827 890 VG-DHNVELVVTDSAGATD-NQIFDITV 915
BiPBP_C: domain 1 of 1, from 896 to 911: score 1.4, E = 8.3
*->tLtVvDadGrsdrvVrf<-*
+L+V+D +G++d f
gi|1961827 896 ELVVTDSAGATDNQ-IF 911
He_PIG: domain 2 of 2, from 957 to 999: score 41.9, E = 4e-11
*->tytlTkpsdgslasysttpggggLPsGLtLdsstGritGtPtptvqp
tyt+T +LP+GL+Ld tG+i+Gt++ + +
gi|1961827 957 TYTAT-----------------NLPTGLSLDTGTGIISGTVADS-AI 985
Gsytftvtatdgsg<-*
+ ++tvta+dg g
gi|1961827 986 ATHSITVTASDGNG 999
PKD: domain 1 of 3, from 987 to 1010: score 10.9, E = 0.0085
CS EEEEEEEEEETTCEEEEEEEEEEE
*->tYtVtLtvsngvgsasattttvtV<-*
t+++t+t+s+g+g +++ vtV
gi|1961827 987 THSITVTASDGNGGSVSDIFDVTV 1010
Big_1: domain 2 of 2, from 991 to 1008: score 1.0, E = 6.8
CS EEEEEET.TECEEEEEEEE
*->tVtAslanngatsvdaktV<-*
tVtAs n+g++s d + V
gi|1961827 991 TVTASDGNGGSVS-DIFDV 1008
FG-GAP: domain 8 of 14, from 1041 to 1079: score 22.7, E = 1.2e-05
CS CCSCEEEC-TTSSSSSEEEEEETCCC SCC T SEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgad....ggt.d.gsvyll<-*
++s ++agD+n DG++Dl++ g++ +++g+++ g+ y+
gi|1961827 1041 GYSVSHAGDINDDGIDDLII---GSSfanpNGNsGaGESYVV 1079
Flagellin_IN: domain 3 of 3, from 1090 to 1109: score 0.9, E = 22
*->tltinggggkensvadgvdi<-*
tl ++ +g++ +v++g+di
gi|1961827 1090 TLELSTLNGSNGFVINGIDI 1109
FG-GAP: domain 9 of 14, from 1114 to 1142: score 25.1, E = 2.5e-06
CS CCSCEEEC-TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-*
++s ++agD+n+DG++Dl++ g+ + + y++
gi|1961827 1114 GHSVSHAGDINNDGIDDLII-------GSlG-ASYVM 1142
Dockerin_1: domain 6 of 8, from 1122 to 1127: score 0.6, E = 48
CS -TT-SS
*->DvNgDG<-*
D+N+DG
gi|1961827 1122 DINNDG 1127
Hema_stalk: domain 1 of 2, from 1127 to 1136: score 1.8, E = 3.8
CS -----SSS--TT
*->iFGiDDLiiGlL<-*
GiDDLiiG L
gi|1961827 1127 --GIDDLIIGSL 1136
GSH-S_ATP: domain 1 of 1, from 1151 to 1163: score 2.3, E = 2.8
CS --HHHHHHHSS--
*->TGirEIerltgvs<-*
TGi E+ l+g++
gi|1961827 1151 TGILELSTLNGTN 1163
FG-GAP: domain 10 of 14, from 1179 to 1211: score 23.7, E = 6.3e-06
CS EC-TTSSSSSEEEEEETCCC SCC T SEEEEE
*->agDlnGDGrpDlvvgaPgad.ggt.d.gsvyll<-*
agD+n DG++Dl++gaP ad++g+++ g+ y+
gi|1961827 1179 AGDINDDGIDDLIIGAPEADpNGNsGaGKSYVV 1211
Linker_histone: domain 1 of 2, from 1217 to 1227: score 1.2, E = 19
CS .TTTTEEEEST
*->tGASGSFKLak<-*
+GASG F L+
gi|1961827 1217 VGASGIFELSS 1227
MNNL: domain 1 of 2, from 1219 to 1225: score 3.1, E = 3.9
*->ssGvFEL<-*
+sG+FEL
gi|1961827 1219 ASGIFEL 1225
Josephin: domain 1 of 2, from 1230 to 1240: score 0.4, E = 8.5
*->GySVFvVrgid<-*
G S+Fv++gi+
gi|1961827 1230 GTSGFVINGIN 1240
FG-GAP: domain 11 of 14, from 1252 to 1284: score 26.8, E = 7.6e-07
CS EC-TTSSSSSEEEEEETCCC SCC T SEEEEE
*->agDlnGDGrpDlvvgaPgad.ggt.d.gsvyll<-*
agD+n+DG++Dl++gaPgad++g+++ g+ y+
gi|1961827 1252 AGDINNDGINDLIIGAPGADpNGNsGaGKSYVV 1284
Dockerin_1: domain 7 of 8, from 1254 to 1259: score 0.6, E = 48
CS -TT-SS
*->DvNgDG<-*
D+N+DG
gi|1961827 1254 DINNDG 1259
Linker_histone: domain 2 of 2, from 1290 to 1300: score 1.2, E = 19
CS .TTTTEEEEST
*->tGASGSFKLak<-*
+GASG F L+
gi|1961827 1290 VGASGIFELSS 1300
MNNL: domain 2 of 2, from 1292 to 1298: score 3.1, E = 3.9
*->ssGvFEL<-*
+sG+FEL
gi|1961827 1292 ASGIFEL 1298
Josephin: domain 2 of 2, from 1303 to 1313: score 0.4, E = 8.5
*->GySVFvVrgid<-*
G S+Fv++gi+
gi|1961827 1303 GTSGFVINGIN 1313
FG-GAP: domain 12 of 14, from 1325 to 1356: score 26.7, E = 8.5e-07
CS EC-TTSSSSSEEEEEETCCC SCC TSEEEEE
*->agDlnGDGrpDlvvgaPgad.ggt.dgsvyll<-*
agD+n+DG++Dl++gaP ad++g+++g+ y+
gi|1961827 1325 AGDINNDGINDLIIGAPNADpNGNsGGESYVV 1356
Dockerin_1: domain 8 of 8, from 1327 to 1332: score 0.6, E = 48
CS -TT-SS
*->DvNgDG<-*
D+N+DG
gi|1961827 1327 DINNDG 1332
FG-GAP: domain 13 of 14, from 1390 to 1428: score 17.1, E = 0.00053
CS CCSCEEEC-TTSSSSSEEEEEETCCC SCC TSEEEEE
*->fgssvaagDlnGDGrpDlvvgaPgad..ggt.dgsvyll<-*
+ s + agD+n DG++D+++g+P ad ++++++g+ y+
gi|1961827 1390 GWSVSDAGDINYDGIDDVIIGVPLADvgESYdAGASYVV 1428
FG-GAP: domain 14 of 14, from 1462 to 1492: score 20.0, E = 7.6e-05
CS CCSCEEEC -TTSSSSSEEEEEETCCCSCC TSEEEEE
*->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvyll<-*
g sv+ ++D+n DG++Dl+v g++ +++y+
gi|1961827 1462 SGISVSNAgDINHDGIDDLIV-------GArFDELYVN 1492
Hema_stalk: domain 2 of 2, from 1476 to 1486: score 2.1, E = 3.2
CS -----SSS--TTS
*->iFGiDDLiiGlLF<-*
GiDDLi+G F
gi|1961827 1476 --GIDDLIVGARF 1486
DUF58: domain 1 of 1, from 1484 to 1497: score 8.9, E = 0.086
*->ARrGkLlvrEfepe<-*
AR ++L+v+Ef++e
gi|1961827 1484 ARFDELYVNEFAAE 1497
Collar: domain 1 of 1, from 1605 to 1618: score 4.6, E = 1.9
CS SSB.B--B-TTXXX
*->sptfglPDLRGrFv<-*
++t ++PD+ +r++
gi|1961827 1605 TNTATTPDMSDRTI 1618
TraB_pillus: domain 1 of 1, from 1616 to 1629: score 1.0, E = 4.5
*->reVtfVvqkGftLk<-*
r ++fVv++G+t +
gi|1961827 1616 RTIEFVVNDGATHS 1629
SoxZ: domain 1 of 2, from 1712 to 1739: score 4.9, E = 0.62
CS --S-EE.EEEEEEETTS-EEEEEEEE--
*->adkaGdelkfsWtDnkGssetaeakItv<-*
++ + d l+ ++ D +G++ ta++++tv
gi|1961827 1712 GETTTDNLTYTLSDGNGGTATATVTVTV 1739
Big_3: domain 1 of 1, from 1718 to 1739: score 4.0, E = 3.4
*->tVTytY.kGq..pvtatftVtV<-*
++Tyt+++G+++ +tat+tVtV
gi|1961827 1718 NLTYTLsDGNggTATATVTVTV 1739
HYR: domain 2 of 3, from 1720 to 1739: score 10.5, E = 0.017
*->tYtatDnaGNeAdsCtFtVtV<-*
tYt +D +G +A + t+tVtV
gi|1961827 1720 TYTLSDGNGGTA-TATVTVTV 1739
PKD: domain 2 of 3, from 1722 to 1739: score 3.0, E = 2.2
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
t s+g+g +++ t+tvtV
gi|1961827 1722 TLSDGNGGTATATVTVTV 1739
I-set: domain 1 of 2, from 1728 to 1739: score 3.3, E = 3.1
CS TEEEEEEEEEEE
*->aGeaeasaeLtV<-*
+G+a+a++++tV
gi|1961827 1728 GGTATATVTVTV 1739
Big_2: domain 1 of 1, from 1732 to 1750: score 4.7, E = 1.1
CS -EEEEEEETT.TEEEEEEE
*->tatItatsgdgnksasvtv<-*
tat+t+t+ +n++ ++t
gi|1961827 1732 TATVTVTVTGINDTPTLTP 1750
MoeA_C: domain 1 of 1, from 1793 to 1813: score 2.0, E = 7.9
CS EE-SS--.B--SEEEEEEEE--
*->viPegtengleaGeeVeVillk<-*
v+ + + ++aG+e+ V l+
gi|1961827 1793 VLNLNGN-TVQAGDEITVADLD 1813
Omega-toxin: domain 1 of 1, from 1795 to 1805: score 2.6, E = 1.8
CS -SSS-EEEEE-
*->nEnGnsvkRCD<-*
n nGn+v+ D
gi|1961827 1795 NLNGNTVQAGD 1805
DUF1964: domain 1 of 1, from 1828 to 1843: score 1.8, E = 9.5
*->aFsWrgadGtStatLT<-*
+F W++ dGt +a+ T
gi|1961827 1828 SFVWNASDGTNFAAGT 1843
PKD: domain 3 of 3, from 1832 to 1849: score 0.7, E = 11
CS EEEETTCEEEEEEEEEEE
*->tvsngvgsasattttvtV<-*
++s+g + a+ tt+t+tV
gi|1961827 1832 NASDGTNFAAGTTLTMTV 1849
SoxZ: domain 2 of 2, from 1931 to 1953: score 4.8, E = 0.65
CS E.EEEEEEETTS-EEEEEEEE--
*->delkfsWtDnkGssetaeakItv<-*
d+++ s+ D++G++ ta++ +t+
gi|1961827 1931 DSFSYSLSDSNGGTATATVNVTI 1953
HYR: domain 3 of 3, from 1935 to 1953: score 3.7, E = 1.8
*->YtatDnaGNeAdsCtFtVtV<-*
Y +D++G +A + t++Vt+
gi|1961827 1935 YSLSDSNGGTA-TATVNVTI 1953
I-set: domain 2 of 2, from 1942 to 1953: score 0.8, E = 17
CS TEEEEEEEEEEE
*->aGeaeasaeLtV<-*
+G+a+a++++t+
gi|1961827 1942 GGTATATVNVTI 1953
HemolysinCabind: domain 1 of 11, from 1962 to 1979: score 13.8, E = 0.0052
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+ +DtL+ ++G+D l
gi|1961827 1962 IGTPQDDTLTADSGDDFL 1979
HemolysinCabind: domain 2 of 11, from 1980 to 1997: score 12.2, E = 0.016
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G GnD+L aGnD
gi|1961827 1980 FGLSGNDVLQAKAGNDFT 1997
HemolysinCabind: domain 3 of 11, from 1998 to 2015: score 14.8, E = 0.0026
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+G+D+L+G+aG D l
gi|1961827 1998 DGGDGDDVLSGDAGQDNL 2015
HemolysinCabind: domain 4 of 11, from 2016 to 2033: score 18.8, E = 0.00016
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G+ GnD ++Gg+G D+l
gi|1961827 2016 FGNLGNDLIDGGEGEDVL 2033
HemolysinCabind: domain 5 of 11, from 2034 to 2051: score 16.0, E = 0.0011
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG+G+D L+Gg+ nD+l
gi|1961827 2034 DGGDGDDMLFGGQENDLL 2051
HemolysinCabind: domain 6 of 11, from 2052 to 2069: score 15.4, E = 0.0017
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G GnD L+Gg+GnD l
gi|1961827 2052 LGQLGNDFLDGGDGNDYL 2069
HemolysinCabind: domain 7 of 11, from 2070 to 2087: score 14.8, E = 0.0025
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+ G+GnD +Gg+GnD l
gi|1961827 2070 DSGKGNDQVFGGNGNDML 2087
HemolysinCabind: domain 8 of 11, from 2088 to 2105: score 18.5, E = 0.00019
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G+ G D L+GgaGnD+l
gi|1961827 2088 LGNLGADFLRGGAGNDLL 2105
RtxA: domain 1 of 2, from 2098 to 2115: score 2.8, E = 12
*->aGgaNvitkvGdggdlaf<-*
+G++N + G+g+d+ f
gi|1961827 2098 GGAGNDLLEAGEGNDILF 2115
HemolysinCabind: domain 9 of 11, from 2106 to 2123: score 21.1, E = 3.1e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G+GnD+L+G+a nDtl
gi|1961827 2106 EAGEGNDILFGDADNDTL 2123
HemolysinCabind: domain 10 of 11, from 2124 to 2141: score 17.2, E = 0.00049
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GGaG+D ++G+ G+D+l
gi|1961827 2124 TGGAGDDLIRGDTGDDLL 2141
HemolysinCabind: domain 11 of 11, from 2142 to 2159: score 13.8, E = 0.005
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+GG GnD L+Gg+G+D++
gi|1961827 2142 DGGVGNDGLFGGSGADQF 2159
SecG: domain 1 of 1, from 2144 to 2163: score 2.9, E = 6
*->GgGgQasgslFgrKarGaenfLtki<-*
G G +++lFg ++Ga++fL ++
gi|1961827 2144 GVG---NDGLFG--GSGADQFLLRM 2163
RtxA: domain 2 of 2, from 2153 to 2171: score 1.4, E = 33
*->GaGgaNvitkvGdggdlaf<-*
G G+ + ++G+g d+ f
gi|1961827 2153 GSGADQFLLRMGAGMDMVF 2171
//